FFCP PHASE1:Hg19::chr7:2883928..2883993,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2768 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4380 | |||
|TSSclassifier=strong | |||
|UniProt=Q03113,B3KXS2,Q6ZQV4 | |||
|association_with_transcript=0bp_to_ENST00000275364,NM_007353,uc003smu.2,uc011jwb.1_5end | |||
|description=CAGE_peak_1_at_GNA12_5end | |||
|id=chr7:2883928..2883993,- | |||
|ontology_enrichment_celltype=CL:0000222!6.08e-11!119;CL:0000115!3.98e-08!35;CL:0000213!4.16e-08!57;CL:0000215!4.16e-08!57;CL:0002078!5.48e-08!44 | |||
|ontology_enrichment_celltype_v019=CL:0000115;2.77e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.65e-11,121;CL:0000115,1.60e-08,36;CL:0000213,1.86e-08,58;CL:0000215,1.86e-08,58;CL:0002078,2.33e-08,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!1.29e-10!194;UBERON:0003081!6.28e-10!216;UBERON:0003914!2.28e-09!118;UBERON:0004111!5.60e-09!241;UBERON:0001009!7.24e-09!113;UBERON:0004535!1.12e-08!110;UBERON:0002050!1.30e-08!605;UBERON:0005423!1.30e-08!605;UBERON:0000923!1.49e-08!604;UBERON:0005291!1.49e-08!604;UBERON:0006598!1.49e-08!604;UBERON:0002532!1.49e-08!604;UBERON:0000468!1.73e-08!659;UBERON:0002049!2.51e-08!79;UBERON:0007798!2.51e-08!79;UBERON:0000467!4.36e-08!625;UBERON:0000922!5.27e-08!612;UBERON:0000480!5.98e-08!626;UBERON:0004872!6.06e-08!84;UBERON:0000119!7.65e-08!312;UBERON:0000483!1.28e-07!309;UBERON:0000055!1.44e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,7.08e-11,315;UBERON:0004120,7.08e-11,315;UBERON:0006603,7.08e-11,315;UBERON:0000025,1.58e-10,192;UBERON:0000923,3.29e-10,560;UBERON:0010316,3.29e-10,560;UBERON:0005291,3.29e-10,560;UBERON:0006598,3.29e-10,560;UBERON:0010317,3.29e-10,560;UBERON:0002532,3.29e-10,560;UBERON:0003081,8.36e-10,203;UBERON:0002050,1.12e-09,564;UBERON:0003914,2.50e-09,117;UBERON:0000922,2.96e-09,592;UBERON:0005423,2.99e-09,581;UBERON:0004111,9.20e-09,240;UBERON:0001009,1.60e-08,112;UBERON:0004535,2.46e-08,109;UBERON:0002049,5.91e-08,78;UBERON:0007798,5.91e-08,78;UBERON:0000119,6.60e-08,309;UBERON:0000483,1.10e-07,306;UBERON:0004872,1.38e-07,83;UBERON:0000055,3.39e-07,68 | |||
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| |||
|short_description=p1@GNA12 | |||
}} |
Revision as of 15:29, 22 January 2014
Short description: | p1@GNA12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GNA12_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000275364, NM_007353, uc003smu.2, uc011jwb.1_5end |
EntrezGene: | GNA12 |
HGNC: | 4380 |
UniProt: | Q03113B3KXS2Q6ZQV4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.65e-11 | 121 |
endothelial cell | 1.60e-08 | 36 |
lining cell | 1.86e-08 | 58 |
barrier cell | 1.86e-08 | 58 |
meso-epithelial cell | 2.33e-08 | 45 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 7.08e-11 | 315 |
mesoderm-derived structure | 7.08e-11 | 315 |
presumptive mesoderm | 7.08e-11 | 315 |
tube | 1.58e-10 | 192 |
germ layer | 3.29e-10 | 560 |
germ layer / neural crest | 3.29e-10 | 560 |
embryonic tissue | 3.29e-10 | 560 |
presumptive structure | 3.29e-10 | 560 |
germ layer / neural crest derived structure | 3.29e-10 | 560 |
epiblast (generic) | 3.29e-10 | 560 |
lateral plate mesoderm | 8.36e-10 | 203 |
embryonic structure | 1.12e-09 | 564 |
epithelial tube | 2.50e-09 | 117 |
embryo | 2.96e-09 | 592 |
developing anatomical structure | 2.99e-09 | 581 |
anatomical conduit | 9.20e-09 | 240 |
circulatory system | 1.60e-08 | 112 |
cardiovascular system | 2.46e-08 | 109 |
vasculature | 5.91e-08 | 78 |
vascular system | 5.91e-08 | 78 |
cell layer | 6.60e-08 | 309 |
epithelium | 1.10e-07 | 306 |
splanchnic layer of lateral plate mesoderm | 1.38e-07 | 83 |
vessel | 3.39e-07 | 68 |