FFCP PHASE1:Hg19::chr6:160101278..160101296,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=106bp_to_uc003qsf.3_5end | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_25_at_SOD2_5end | |||
|id=chr6:160101278..160101296,- | |||
|ontology_enrichment_celltype=CL:0002057!3.86e-25!42;CL:0000860!1.51e-23!45;CL:0002194!6.63e-21!63;CL:0000576!6.63e-21!63;CL:0000040!6.63e-21!63;CL:0000559!6.63e-21!63;CL:0002009!1.17e-19!65;CL:0000766!3.03e-18!76;CL:0000839!6.87e-17!70;CL:0000557!2.18e-16!71;CL:0000763!3.89e-09!112;CL:0000049!3.89e-09!112;CL:0002087!1.84e-08!119;CL:0000738!2.28e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.43e-51;33!CL:0002057;6.43e-51;33!CL:0000473;9.90e-45;39!CL:0000234;9.90e-45;39!CL:0000576;7.94e-28;48!CL:0000766;5.06e-24;69!CL:0000775;3.96e-11;3!CL:0000763;2.93e-10;100!CL:0002087;1.36e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.27e-58,48;CL:0000234,2.27e-58,48;CL:0000860,7.43e-55,42;CL:0002057,7.43e-55,42;CL:0002194,5.43e-45,59;CL:0000576,5.43e-45,59;CL:0000040,5.43e-45,59;CL:0000559,5.43e-45,59;CL:0000766,6.03e-44,72;CL:0002009,2.88e-43,61;CL:0000839,2.09e-39,66;CL:0000557,1.06e-38,67;CL:0000763,2.00e-26,108;CL:0000049,2.00e-26,108;CL:0002087,2.91e-19,115;CL:0000738,3.31e-19,136;CL:0002031,3.92e-18,120;CL:0002032,6.69e-15,161;CL:0000837,6.69e-15,161;CL:0000037,6.26e-14,168;CL:0000988,8.50e-13,177;CL:0000775,3.60e-11,3;CL:0000134,3.60e-09,354;CL:0002320,8.74e-09,361;CL:0000048,1.10e-08,427;CL:0000034,1.20e-08,441;CL:0000723,2.12e-08,433;CL:0000219,1.95e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;9.15e-42;42!CL:0000049;9.05e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.53e-15!80;UBERON:0002390!3.68e-14!102;UBERON:0003061!3.68e-14!102;UBERON:0002193!3.89e-14!112;UBERON:0001474!3.86e-13!86;UBERON:0002405!4.08e-13!115;UBERON:0004765!2.44e-12!101;UBERON:0001434!2.44e-12!101;UBERON:0002204!3.93e-10!167;UBERON:0000926!5.47e-07!448;UBERON:0004120!5.47e-07!448;UBERON:0006603!5.47e-07!448;UBERON:0003081!8.10e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002081;6.13e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.40e-33,76;UBERON:0001474,3.44e-30,82;UBERON:0002405,8.27e-30,93;UBERON:0004765,8.35e-27,90;UBERON:0002193,3.43e-26,108;UBERON:0002390,1.03e-25,98;UBERON:0003061,1.03e-25,98;UBERON:0001434,3.27e-25,100;UBERON:0002204,3.11e-17,167;UBERON:0003081,2.12e-13,203;UBERON:0000926,1.49e-10,315;UBERON:0004120,1.49e-10,315;UBERON:0006603,1.49e-10,315;UBERON:0002384,2.92e-08,371;UBERON:0002081,3.96e-07,2;UBERON:0010227,3.96e-07,2 | |||
|phase1_expression=0,0.642301571672949,0.140954404095971,0,0,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0,0,1.34465029290355,1.20538905604795,0,0.975865597581014,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0.0774672005803016,0.142169232487422,0.293600439334847,2.21598163412751,1.40381113229099,1.08505435357926,0.223915474239924,0.32389366601898,0,0.581592955118259,0,0.485168122375632,3.0215774797739,3.28934310417461,2.47765096716083,6.90461741573161,3.33008918487831,3.54723344832878,4.82643953031266,1.29096936716765,9.47985406160392,3.9530891303947,0.818718450173537,2.02251136000576,6.73384563215986,2.56743221660875,3.83602275479425,1.31940520074686,1.79517291859469,0.852449501065388,16.8321358404579,4.53908179752912,3.11411124497787,3.76872997885115,8.86520961314342,1.3031330682307,13.3187890579341,3.31449872388808,5.37986058649504,0,0.212604299965044,0,0.112328631146495,0.300353785683013,0,0.570025487482497,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0.205601498999509,0,0.651844533267181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,1.00267582127178,0.724232594804119,0,0.486634870302636,0.0945348171640679,0,0,0.0654895377488563,0,0.370784442784429,0,0,0.132957960518865,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.926864265692532,0,0,0.560677600142307,1.06748995729705,0.24666754841716,0,0.404132016209064,0.163461903113459,0,0,0,0,0,0.448346041655403,0.117434498643765,0,0,0,0.245668634623536,0,0,1.23633464639278,0,0,0,0.125118519871964,0,0,0.30648779579902,0.751190294532984,0,0.179389635688862,0,0.211931901159562,0,0,0,0,0,0,0,0.0920498986422993,0,0.355009592516614,0,0,0.193260853163297,0.272746120590835,0,0,0,0.116193942869518,0,0,0.36497735907583,1.56449532329816,1.92972281457866,0,0,0,0.118306800039844,0.337169380156203,0,0,0,0,0,0,0,0,0,0,0,6.33775174109154,3.9313088667105,0,0.441463099414651,0.245976877086227,0,0,0,0,0,0,0,0,0.115930404975077,0,0.577465791044295,4.1668696131895,3.42457474022277,0,0,0,0.702012795417713,0.445893486866185,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,1.50719688529793,0,1.09970290300263,2.43247561282381,1.00451418286425,6.32501818449095,0,0,0,0.579125226670317,0.410952645100767,0.716243852959582,0,0,0,0,0,0,0,0,0,6.74106321552464,20.9413021442817,2.48649308061621,0.12269149171914,0,0,0,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0,0,0.521301686808497,0,0,0.206768026122887,0.215714200818617,0.640365346820666,0,0,0,0,0,0,0,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0,0,0,0,0,0,0,0.182091168006717,1.31124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0.429680979473094,0.145016693914229,0,0.0890320356467374,0.165284915360978,0,0,0.10115778085555,0,0,0,0,0,0,0.18532421910392,0,0,0,0.190630193923825,0,0,0.318203247925937,0,0,0,0.117812402345686,0,0,0,0,1.46228093778771,0,0,0.141405431953713,0,0,0,0.438450885253763,0.578775534266688,0,0.202910376962704,0,0,0,0.0982490410131212,0,0,4.22215270595328,0.658589785919804,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,1.13929437434833,0.952927101831156,0,0.648473311192717,0,0.79312517629427,0,0,0,0,0.28853842595289,0,0.159426272728822,0,0,0,0,0,0,0.156679895773023,0,0,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.586032717087576,0,0.111443384277478,0.284136146806413,0,0,0,0,0.140669416410513,0.556543525114529,0,0,0.19924798825107,0,0,0.102268682502155,0,0,0,0.179021174675609,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0,0.10893846351899,0,0,1.48124672601102,0,0,0,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0.166211681900156,0,0,0,0,0,0.632994193584081,0.489698424477443,0,0,0,0.176915129006678,0,0,0,0.104421949505455,0,0,0,0,0,0,0,2.41981432097328,0.30607276163049,0.379119477770928,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0.219267951258557,0,0.193978032976839,0,0.225980740780532,0,0,0.126621591911757,0,0.320635281006135,0,0.19980960958213,0,0,0,0.14405479798815,0.124252535565433,0,0,0,0.101998217636322,0,0.600420288709789,0.547621515567972,0,0,0,0.279282401272254,0,1.43574604915363,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0.13480708770837,0.0984274815147488,0,0,0,0,0,0,0,0,0,0.335434687599266,0.788057072991982,0,0,0.35857467866569,0,1.42939065274673,0.662091970365432,0.25426853765475,0.542999601753713,0,0,0,0.082092520749339,0.170388021785422,0.113312091520126,0.58620893471233,0,0,0.13223260174269,0,0,0.106787412567695,0,0.828478110694391,0.496166021811951,0.197611631897944,0,0,0,0.5013797880454,0.919036730290385,0,0,0,0.854183854313742,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0,0,0.37880601055017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| |||
|short_description=p25@SOD2 | |||
}} |
Revision as of 14:56, 22 January 2014
Short description: | p25@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_SOD2_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | 106bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.27e-58 | 48 |
phagocyte | 2.27e-58 | 48 |
classical monocyte | 7.43e-55 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.43e-55 | 42 |
monopoietic cell | 5.43e-45 | 59 |
monocyte | 5.43e-45 | 59 |
monoblast | 5.43e-45 | 59 |
promonocyte | 5.43e-45 | 59 |
myeloid leukocyte | 6.03e-44 | 72 |
macrophage dendritic cell progenitor | 2.88e-43 | 61 |
myeloid lineage restricted progenitor cell | 2.09e-39 | 66 |
granulocyte monocyte progenitor cell | 1.06e-38 | 67 |
myeloid cell | 2.00e-26 | 108 |
common myeloid progenitor | 2.00e-26 | 108 |
nongranular leukocyte | 2.91e-19 | 115 |
leukocyte | 3.31e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 3.92e-18 | 120 |
hematopoietic oligopotent progenitor cell | 6.69e-15 | 161 |
hematopoietic multipotent progenitor cell | 6.69e-15 | 161 |
hematopoietic stem cell | 6.26e-14 | 168 |
hematopoietic cell | 8.50e-13 | 177 |
neutrophil | 3.60e-11 | 3 |
mesenchymal cell | 3.60e-09 | 354 |
connective tissue cell | 8.74e-09 | 361 |
multi fate stem cell | 1.10e-08 | 427 |
stem cell | 1.20e-08 | 441 |
somatic stem cell | 2.12e-08 | 433 |
motile cell | 1.95e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.40e-33 | 76 |
bone element | 3.44e-30 | 82 |
immune system | 8.27e-30 | 93 |
skeletal element | 8.35e-27 | 90 |
hemolymphoid system | 3.43e-26 | 108 |
hematopoietic system | 1.03e-25 | 98 |
blood island | 1.03e-25 | 98 |
skeletal system | 3.27e-25 | 100 |
musculoskeletal system | 3.11e-17 | 167 |
lateral plate mesoderm | 2.12e-13 | 203 |
mesoderm | 1.49e-10 | 315 |
mesoderm-derived structure | 1.49e-10 | 315 |
presumptive mesoderm | 1.49e-10 | 315 |
connective tissue | 2.92e-08 | 371 |
cardiac atrium | 3.96e-07 | 2 |
future cardiac atrium | 3.96e-07 | 2 |