FFCP PHASE1:Hg19::chr6:138428613..138428624,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64065 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17637 | |||
|TSSclassifier=strong | |||
|UniProt=Q96FX8 | |||
|association_with_transcript=23bp_to_ENST00000421351_5end | |||
|description=CAGE_peak_3_at_PERP_5end | |||
|id=chr6:138428613..138428624,- | |||
|ontology_enrichment_celltype=CL:0000066!1.71e-22!254;CL:0000220!5.75e-19!246;CL:0002321!7.68e-19!248;CL:0000055!3.65e-12!180;CL:0000222!2.25e-10!119;CL:0000192!1.57e-08!42;CL:0000514!1.57e-08!42;CL:0000183!1.72e-08!59;CL:0000548!8.82e-08!679;CL:0000004!8.82e-08!679;CL:0000255!8.82e-08!679;CL:0000680!1.57e-07!57;CL:0000056!1.57e-07!57;CL:0000355!1.57e-07!57;CL:0000187!2.31e-07!54;CL:0000012!4.55e-07!682;CL:0000057!9.41e-07!75 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.82e-22,253;CL:0002321,5.26e-19,250;CL:0000222,1.36e-10,121;CL:0000192,1.43e-08,43;CL:0000514,1.43e-08,43;CL:0000680,1.53e-07,58;CL:0000056,1.53e-07,58;CL:0000355,1.53e-07,58;CL:0000187,2.28e-07,55;CL:0000057,4.65e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!2.73e-07!29;DOID:120!4.67e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:193;2.80e-07;29!DOID:120;5.28e-07;27!DOID:2394;9.69e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:193,2.26e-07,29;DOID:120,3.91e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0002100!7.88e-16!216;UBERON:0003104!5.96e-14!238;UBERON:0009142!5.96e-14!238;UBERON:0005256!1.63e-11!143;UBERON:0000481!3.50e-11!347;UBERON:0000466!8.33e-11!126;UBERON:0000475!1.28e-10!365;UBERON:0000464!1.67e-10!104;UBERON:0003914!2.18e-10!118;UBERON:0004119!2.53e-10!169;UBERON:0000925!2.53e-10!169;UBERON:0006595!2.53e-10!169;UBERON:0002049!1.87e-09!79;UBERON:0007798!1.87e-09!79;UBERON:0000490!2.00e-09!138;UBERON:0002553!3.05e-08!70;UBERON:0009569!3.37e-08!113;UBERON:0001007!4.14e-08!155;UBERON:0001555!4.14e-08!155;UBERON:0007026!4.14e-08!155;UBERON:0000468!4.43e-08!659;UBERON:0000119!6.70e-08!312;UBERON:0000486!9.60e-08!82;UBERON:0000483!1.24e-07!309;UBERON:0000914!2.27e-07!83;UBERON:0002329!2.27e-07!83;UBERON:0003077!2.27e-07!83;UBERON:0003059!2.27e-07!83;UBERON:0007282!2.27e-07!83;UBERON:0009618!2.27e-07!83;UBERON:0007285!2.27e-07!83;UBERON:0005156!2.74e-07!59;UBERON:0000990!2.74e-07!59;UBERON:0000055!3.34e-07!69;UBERON:0004921!4.90e-07!129;UBERON:0004185!4.90e-07!129;UBERON:0003102!5.93e-07!95;UBERON:0001637!6.12e-07!42;UBERON:0003509!6.12e-07!42;UBERON:0004572!6.12e-07!42;UBERON:0004872!6.76e-07!84 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.54e-15,199;UBERON:0003104,6.58e-11,160;UBERON:0009142,6.58e-11,160;UBERON:0003914,1.63e-10,117;UBERON:0000490,8.21e-10,148;UBERON:0002049,4.42e-09,78;UBERON:0007798,4.42e-09,78;UBERON:0004119,1.77e-08,160;UBERON:0000925,1.77e-08,160;UBERON:0006595,1.77e-08,160;UBERON:0005256,1.81e-08,122;UBERON:0009569,7.07e-08,112;UBERON:0000486,8.98e-08,83;UBERON:0003102,1.12e-07,99;UBERON:0005156,2.18e-07,59;UBERON:0000990,2.18e-07,59;UBERON:0001637,4.55e-07,42;UBERON:0003509,4.55e-07,42;UBERON:0004572,4.55e-07,42;UBERON:0000055,7.95e-07,68 | |||
|phase1_expression=4.54195948176392,10.7050261945492,5.63817616383885,4.00293193412522,5.81049422755474,7.85104671690332,0,3.79031924056099,2.08948502559871,8.60068777755281,5.58240934377942,6.55324116390517,17.1448535848495,11.1389717664042,16.2384714106679,2.6893005858071,5.42425075221579,7.30310090387373,5.85519358548608,2.58554221961255,7.14002419354885,2.19418305034661,1.14494394852423,2.87436292653057,2.13422487311165,0.840547463227464,1.06730766284929,1.49550484495991,0,0,0,2.75826367343678,4.51808878167375,4.43704812200145,0,0,0,0,0.401088894940283,0.434021741431704,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0.954053754535364,0,0,0.382273228125229,0,0,0,0.786839080455332,0,0.822405995998037,1.67186495390678,0.977766799900771,0,0,1.89397776704795,0,1.10766947291811,1.35401931882508,3.20228299314188,4.81219585971549,0.493313713811028,0.552700035571697,0.289803085735052,0,0,0,0.793165398882963,0,0,0.506039384039006,0,1.30216690771284,0.950452044448374,0,0.255973222308837,1.24930726552346,0.710331756132051,0,1.81446068902259,1.87208137048455,0.724122019413995,0,0.670700859703636,4.47518966452356,6.50590474292219,6.51739283826656,8.25625158076695,0,6.8128881842369,3.68685786939865,7.53879951372717,4.83091321312193,2.03017567021455,7.28590576585084,8.89882662682631,0,0,0.132957960518865,0,0,0,4.57153536943422,5.16140757063675,4.16568601929113,4.52246353539208,7.1314904155684,6.87795104850169,5.22487416342026,4.90991842421725,7.1153252537342,4.35136796594071,8.86224497640123,3.04108842287405,8.7862340717341,4.41195696415042,12.9622711661082,3.03619076165871,3.59246996201872,2.92789849256638,1.53316637465883,0.949265659568129,5.1296488300514,0,0,8.28578699070815,7.9515512271251,3.92554586160197,5.95841313659485,8.3182620017156,5.67469411517371,5.60677600142307,3.20246987189115,7.4000264525148,0.311211035399766,3.77189881795127,5.72116660897106,7.87058623753643,9.21881479167998,5.62371436401112,7.80400192075801,1.71141546463335,6.27684458317565,4.46251094846307,3.23745888736263,4.49442581447195,4.69554593886255,4.17636678860011,8.88601718111583,3.56400857184616,5.93440630268536,4.55080680969013,7.90479955997862,5.72342787443825,3.25308151667107,6.37247465613621,4.38977620880838,1.5324389789951,4.35690370829131,2.7223723958405,3.58779271377724,3.20336083227851,2.7551147150743,9.90300617078528,4.43125875725287,1.8034837803194,4.46680455195816,4.21940830603166,3.11798416515836,2.77677151668526,3.22174645248048,5.33431987502079,4.61512470271599,2.72030665214629,3.89989362314122,4.25173876959253,4.90943017063502,2.86804595389004,3.04934265323988,3.18071443971565,5.22872742912833,5.07939169575315,6.56034212276634,2.91981887260664,1.56449532329816,7.71889125831462,4.14404764057442,6.03678306441573,9.38443326170461,3.19428360107579,3.20310911148393,4.33819853790268,3.19852520923942,2.83243277320128,3.79632990577755,5.52808363456674,4.12065076763227,2.69323009862473,2.95262181849859,4.20725321410337,2.057870056657,1.47008711385542,6.33775174109154,2.94848165003288,3.54473944008842,0,3.07471096357784,6.34800898104545,6.58501712451753,2.24803506515239,6.73544115157927,8.61072539974325,3.25808305310325,5.19967392639789,2.88662684050547,5.21686822387846,8.57083467921498,2.59859605969933,4.1668696131895,6.27838702374174,6.3216351836742,4.29243081047436,0,0,0,8.43604505880993,3.86358894857377,5.52922879245307,6.53777215730793,3.19697332365358,4.60059214998253,0.492663237895943,0.088048434013226,0.207328115540772,0.576479813667846,1.00993946741104,3.55588208036147,5.34783795781589,1.17217447210047,0,3.70178973731965,5.70651809903443,5.14487578735041,4.48524337381443,6.5394010324992,4.03360572015225,5.55868377758444,0,3.381211010224,3.45719551560332,6.24044621468197,1.28603687131071,1.41849132023278,2.39779961114489,6.14805372730035,1.62786481617433,4.93944202068461,3.90883421152482,6.04166312862328,4.75171123760058,10.5503781970855,2.61460037580088,17.7951924304062,0,0,0,7.42837052023906,6.89171615004683,5.70547620162874,4.48822050669496,4.52047909610843,4.65558504423729,1.45710687191585,0.394061520403854,0.431255149719035,0.128343036279748,0.508189248444927,0,0,0.502548796003046,0,0,0,0,9.20186187893549,9.00306937907419,11.1218659716892,8.7347761842939,8.02930449587228,10.4083593922397,16.6340809289653,1.20378439891088,11.3703752027992,6.2083842775503,0.664225598535437,2.58116835958384,5.64743494042539,4.89502893656851,6.17658162859541,0,0,0.426910231213777,2.12189300012382,6.65741758041988,7.25736703991233,6.69891081110698,3.6830873589135,8.13914273855913,6.79137491055215,9.72243773226737,6.91671860917512,5.93672265779964,4.31787142647436,5.85953693533319,4.5169935807595,10.904343012856,6.39157081529776,3.02148623979056,9.42380410425439,6.35358823657685,5.97035130455955,7.28364672026868,16.1283030400092,7.21919380651859,10.0890091606783,6.27479815341484,5.84556898613043,6.96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| |||
|short_description=p3@PERP | |||
}} |
Revision as of 14:13, 22 January 2014
Short description: | p3@PERP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PERP_5end |
Coexpression cluster: | NA |
Association with transcript: | 23bp_to_ENST00000421351_5end |
EntrezGene: | PERP |
HGNC: | 17637 |
UniProt: | Q96FX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.82e-22 | 253 |
embryonic cell | 5.26e-19 | 250 |
mesodermal cell | 1.36e-10 | 121 |
smooth muscle cell | 1.43e-08 | 43 |
smooth muscle myoblast | 1.43e-08 | 43 |
muscle precursor cell | 1.53e-07 | 58 |
myoblast | 1.53e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.53e-07 | 58 |
muscle cell | 2.28e-07 | 55 |
fibroblast | 4.65e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
trunk | 4.54e-15 | 199 |
mesenchyme | 6.58e-11 | 160 |
entire embryonic mesenchyme | 6.58e-11 | 160 |
epithelial tube | 1.63e-10 | 117 |
unilaminar epithelium | 8.21e-10 | 148 |
vasculature | 4.42e-09 | 78 |
vascular system | 4.42e-09 | 78 |
endoderm-derived structure | 1.77e-08 | 160 |
endoderm | 1.77e-08 | 160 |
presumptive endoderm | 1.77e-08 | 160 |
trunk mesenchyme | 1.81e-08 | 122 |
subdivision of trunk | 7.07e-08 | 112 |
multilaminar epithelium | 8.98e-08 | 83 |
surface structure | 1.12e-07 | 99 |
reproductive structure | 2.18e-07 | 59 |
reproductive system | 2.18e-07 | 59 |
artery | 4.55e-07 | 42 |
arterial blood vessel | 4.55e-07 | 42 |
arterial system | 4.55e-07 | 42 |
vessel | 7.95e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 2.26e-07 | 29 |
female reproductive organ cancer | 3.91e-07 | 27 |