FFCP PHASE1:Hg19::chr6:130686977..130686989,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=154075 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21574 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-407bp_to_ENST00000368134,uc003qbx.2_5end | |||
|description=CAGE_peak_7_at_SAMD3_5end | |||
|id=chr6:130686977..130686989,- | |||
|ontology_enrichment_celltype=CL:0000359!1.46e-16!32;CL:0000192!5.93e-16!42;CL:0000514!5.93e-16!42;CL:0000055!1.33e-13!180;CL:0000187!1.14e-10!54;CL:0000393!8.61e-10!60;CL:0000211!8.61e-10!60;CL:0000680!1.01e-09!57;CL:0000056!1.01e-09!57;CL:0000355!1.01e-09!57;CL:0000183!3.78e-09!59;CL:0002334!5.07e-08!12;CL:0002539!2.02e-07!10;CL:1000306!2.44e-07!4;CL:0002547!2.44e-07!4;CL:0002594!6.91e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.09e-22;32!CL:0000192;9.03e-14;43!CL:0002591;1.07e-09;1!CL:1000306;2.16e-09;4!CL:0002547;2.16e-09;4!CL:0002568;3.12e-09;1!CL:0002594;7.88e-09;4!CL:0002539;6.75e-08;10!CL:0000393;9.08e-08;61!CL:0000211;9.08e-08;61!CL:0000187;1.35e-07;55!CL:0002595;2.28e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.18e-23,32;CL:0000192,3.34e-17,43;CL:0000514,3.34e-17,43;CL:0000187,4.21e-13,55;CL:0000680,2.42e-12,58;CL:0000056,2.42e-12,58;CL:0000355,2.42e-12,58;CL:0000393,1.17e-11,61;CL:0000211,1.17e-11,61;CL:0002591,1.03e-09,1;CL:0002568,1.99e-09,1;CL:1000306,2.17e-09,4;CL:0002547,2.17e-09,4;CL:0002594,5.30e-09,4;CL:0002539,5.86e-08,10;CL:0002595,2.68e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;9.03e-14;43!CL:0000355;2.40e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;3.12e-09;1!DOID:0060061;3.12e-09;1!DOID:8691;3.12e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,2.55e-09,1;DOID:0060061,2.55e-09,1;DOID:8691,2.55e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001637!2.09e-14!42;UBERON:0003509!2.09e-14!42;UBERON:0004572!2.09e-14!42;UBERON:0004573!1.66e-11!33;UBERON:0004571!1.66e-11!33;UBERON:0001981!1.31e-09!60;UBERON:0007500!1.31e-09!60;UBERON:0004537!1.31e-09!60;UBERON:0006965!1.31e-09!60;UBERON:0004872!1.84e-09!84;UBERON:0000055!5.46e-09!69;UBERON:0001134!1.29e-08!61;UBERON:0002036!1.29e-08!61;UBERON:0003082!1.29e-08!61;UBERON:0001135!2.68e-08!15;UBERON:0002385!4.02e-08!63;UBERON:0001015!4.02e-08!63;UBERON:0000383!4.02e-08!63;UBERON:0002049!1.34e-07!79;UBERON:0007798!1.34e-07!79;UBERON:0004237!2.02e-07!10;UBERON:0004695!2.02e-07!10;UBERON:0002111!2.02e-07!10;UBERON:0004178!2.02e-07!10;UBERON:0000415!2.44e-07!4;UBERON:0007240!2.44e-07!4;UBERON:0005742!2.44e-07!4;UBERON:0005734!2.44e-07!4;UBERON:0004664!2.44e-07!4;UBERON:0004663!2.44e-07!4;UBERON:0000947!2.44e-07!21;UBERON:0010191!2.44e-07!21;UBERON:0001310!6.91e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.90e-17;33!UBERON:0004571;2.90e-17;33!UBERON:0001637;4.23e-17;42!UBERON:0003509;4.23e-17;42!UBERON:0004572;4.23e-17;42!UBERON:0007500;6.47e-10;56!UBERON:0001981;6.47e-10;56!UBERON:0004537;6.47e-10;56!UBERON:0000947;1.07e-09;21!UBERON:0010191;1.07e-09;21!UBERON:0004797;2.16e-09;4!UBERON:0000415;2.16e-09;4!UBERON:0007240;2.16e-09;4!UBERON:0005742;2.16e-09;4!UBERON:0005734;2.16e-09;4!UBERON:0004664;2.16e-09;4!UBERON:0004663;2.16e-09;4!UBERON:0006834;3.12e-09;1!UBERON:0001310;7.88e-09;4!UBERON:0000055;9.43e-09;65!UBERON:0004237;6.75e-08;10!UBERON:0004695;6.75e-08;10!UBERON:0002111;6.75e-08;10!UBERON:0004178;6.75e-08;10!UBERON:0003834;2.28e-07;5!UBERON:0001533;2.28e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,8.70e-26,42;UBERON:0003509,8.70e-26,42;UBERON:0004572,8.70e-26,42;UBERON:0004573,1.18e-18,33;UBERON:0004571,1.18e-18,33;UBERON:0007500,9.20e-18,59;UBERON:0001981,9.20e-18,59;UBERON:0004537,9.20e-18,59;UBERON:0006965,9.20e-18,59;UBERON:0004872,1.37e-16,83;UBERON:0000055,3.89e-15,68;UBERON:0002049,6.29e-13,78;UBERON:0007798,6.29e-13,78;UBERON:0004535,4.94e-12,109;UBERON:0001009,1.21e-11,112;UBERON:0001134,1.92e-11,62;UBERON:0002036,1.92e-11,62;UBERON:0003082,1.92e-11,62;UBERON:0003914,4.89e-11,117;UBERON:0002385,4.91e-11,64;UBERON:0001015,4.91e-11,64;UBERON:0000383,4.91e-11,64;UBERON:0002329,8.64e-10,71;UBERON:0003059,8.64e-10,71;UBERON:0007282,8.64e-10,71;UBERON:0004290,8.64e-10,71;UBERON:0009618,8.64e-10,71;UBERON:0000947,9.58e-10,21;UBERON:0010191,9.58e-10,21;UBERON:0003077,1.24e-09,72;UBERON:0007285,1.24e-09,72;UBERON:0007524,1.77e-09,73;UBERON:0000415,2.17e-09,4;UBERON:0007240,2.17e-09,4;UBERON:0005742,2.17e-09,4;UBERON:0005734,2.17e-09,4;UBERON:0004664,2.17e-09,4;UBERON:0004663,2.17e-09,4;UBERON:0006834,3.00e-09,1;UBERON:0001310,5.30e-09,4;UBERON:0007503,9.08e-09,78;UBERON:0000486,3.82e-08,83;UBERON:0004237,5.86e-08,10;UBERON:0004695,5.86e-08,10;UBERON:0002111,5.86e-08,10;UBERON:0004178,5.86e-08,10;UBERON:0003834,2.68e-07,5;UBERON:0001533,2.68e-07,5 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0.730310090387373,1.46379839637152,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0.50133791063589,0,0,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,6.88527740228738,10.3261183469573,0.709336764396714,1.12135520028461,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0.717558542755448,0.213557388818567,0.211931901159562,0,0.103052529238439,1.03056216018252,0,0.506328996723799,0.584622030967192,0,0,0.161646056818812,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55126058909333,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0.301439377059586,0,1.09970290300263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0.117141414992713,0.300946099727719,0,0,0.664225598535437,0.921845842708516,0,0,0,0,0,0,0,0,0,0.496215615637554,1.07423381301644,0.561320188866147,0.384417447767103,0,0.804269605718038,0,0.154209693802656,0.177561725313127,0.246381468041427,0,0.232420756919918,0,0,0,0.229628896329213,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.66662224295152,2.7881490806424,0,0.532306030317022,0.869932992075073,1.11194531462352,0,0,0.316379424718726,0,0,0,2.22742273548156,0,0.179872457583315,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0.487426979262569,2.11300293513511,0,0.282810863907425,4.52032466480971,1.10273068709225,0,0.876901770507525,0,0,1.42037263873893,0.30982349809975,1.69017361519345,0.143411352204052,0,0.7133421029625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0,0,0,0.503865495708552,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0.274083849293502,0.596143835108969,0.189932387867636,0,0.240476460754601,0,0,0,0,0,0,0.124252535565433,0,0,0.209205692624666,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0.0846733320657845,0.795229689809303,0.408610218334727,0.321506296930038,0,0,0,0,0.364497339948148,0,0,0.314727528809989,0.105600336519406,0,0,0,0,0,2.17199840701485,0,0,0,0.164185041498678,4.08931252285012,0.226624183040251,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0.568209015825267,0,0,0,1.36107831386915,0.310874401165561,0.295710299979268,0.477890301491107,0,0,0.414706207840855,1.86089200190596,0,0,0.380805212168795,1.22061219961398,0.181848659202559,0.429642228169954,0,0.398095888698616,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0.38582807654183,0,0,0,0,0,0,0.265729680626726,0.817826971279221,0,0,0,1.39991177098451,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0.192687675289379,0,0.159633859057151,0.205116364240755,0.504143392443436,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0.225630985047772,0,0,0,0,0,0.202612753855184,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0.591660003652827,0.255640214277473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0.196308467114945,0,0,0.169927114687817,0.0939839179798536,0.0644578879735772,0,0,0.705789743431384,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,1.22241444182866,0,0,0,0 | |||
|short_description=p7@SAMD3 | |||
}} |
Revision as of 13:51, 22 January 2014
Short description: | p7@SAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SAMD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -407bp_to_ENST00000368134, uc003qbx.2_5end |
EntrezGene: | SAMD3 |
HGNC: | 21574 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.18e-23 | 32 |
smooth muscle cell | 3.34e-17 | 43 |
smooth muscle myoblast | 3.34e-17 | 43 |
muscle cell | 4.21e-13 | 55 |
muscle precursor cell | 2.42e-12 | 58 |
myoblast | 2.42e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.42e-12 | 58 |
electrically responsive cell | 1.17e-11 | 61 |
electrically active cell | 1.17e-11 | 61 |
smooth muscle cell of the pulmonary artery | 1.03e-09 | 1 |
mesenchymal stem cell of Wharton's jelly | 1.99e-09 | 1 |
fibroblast of tunica adventitia of artery | 2.17e-09 | 4 |
fibroblast of the aortic adventitia | 2.17e-09 | 4 |
smooth muscle cell of the umbilical artery | 5.30e-09 | 4 |
aortic smooth muscle cell | 5.86e-08 | 10 |
smooth muscle cell of the subclavian artery | 2.68e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 2.55e-09 | 1 |
cutaneous T cell lymphoma | 2.55e-09 | 1 |
mycosis fungoides | 2.55e-09 | 1 |