FFCP PHASE1:Hg19::chr6:123958111..123958139,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10345 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12261 | |||
|TSSclassifier=strong | |||
|UniProt=F5H6E3 | |||
|association_with_transcript=0bp_to_ENST00000542443_5end | |||
|coexpression_cluster_id=C31 | |||
|description=CAGE_peak_2_at_TRDN_5end | |||
|id=chr6:123958111..123958139,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;4.93e-12;3!UBERON:0003057;4.93e-12;3!UBERON:0005062;2.86e-10;4!UBERON:0007284;2.86e-10;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;2.38e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,2.33e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.03e-56!115;UBERON:0001049!2.17e-15!57;UBERON:0005068!2.17e-15!57;UBERON:0006241!2.17e-15!57;UBERON:0007135!2.17e-15!57;UBERON:0003075!2.50e-14!86;UBERON:0007284!2.50e-14!86;UBERON:0002346!2.52e-13!90;UBERON:0005743!1.71e-11!86;UBERON:0001017!2.39e-11!82;UBERON:0003076!2.47e-11!15;UBERON:0003057!2.47e-11!15;UBERON:0002298!3.58e-11!8;UBERON:0002616!1.11e-10!59;UBERON:0003103!1.89e-10!69;UBERON:0000073!9.82e-10!94;UBERON:0001016!9.82e-10!94;UBERON:0007100!2.89e-09!27;UBERON:0000955!4.93e-09!69;UBERON:0006238!4.93e-09!69;UBERON:0000153!6.88e-09!129;UBERON:0007811!6.88e-09!129;UBERON:0004121!1.64e-08!169;UBERON:0000924!4.23e-08!173;UBERON:0006601!4.23e-08!173;UBERON:0004151!6.72e-08!3;UBERON:0003978!7.03e-08!3;UBERON:0009751!7.03e-08!3;UBERON:0000946!7.03e-08!3;UBERON:0002523!7.03e-08!3;UBERON:0005983!7.03e-08!3;UBERON:0002165!7.03e-08!3;UBERON:0002062!7.03e-08!3;UBERON:0007280!7.03e-08!3;UBERON:0002780!1.01e-07!41;UBERON:0001890!1.01e-07!41;UBERON:0006240!1.01e-07!41;UBERON:0003080!1.85e-07!42;UBERON:0000033!2.01e-07!123;UBERON:0002240!4.36e-07!3;UBERON:0004111!4.85e-07!241;UBERON:0004733!5.78e-07!12;UBERON:0002028!5.78e-07!12;UBERON:0007277!5.78e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;6.03e-15;25!UBERON:0004151;1.39e-13;3!UBERON:0003978;1.51e-13;3!UBERON:0000946;1.51e-13;3!UBERON:0002240;4.93e-12;3!UBERON:0005174;4.93e-12;3!UBERON:0001137;4.93e-12;3!UBERON:0005090;5.29e-10;2!UBERON:0001630;5.29e-10;2!UBERON:0000341;9.64e-10;2!UBERON:0002081;1.57e-09;2!UBERON:0002133;1.63e-09;2!UBERON:0003127;2.75e-09;2!UBERON:0000948;1.82e-08;22!UBERON:0007023;4.69e-07;114!UBERON:0001723;6.78e-07;3!UBERON:0001033;6.78e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.70e-23,114;UBERON:0003103,2.06e-15,68;UBERON:0007100,1.14e-13,27;UBERON:0004151,1.36e-13,3;UBERON:0003978,1.48e-13,3;UBERON:0009751,1.48e-13,3;UBERON:0000946,1.48e-13,3;UBERON:0002523,1.48e-13,3;UBERON:0005983,1.48e-13,3;UBERON:0002165,1.48e-13,3;UBERON:0002062,1.48e-13,3;UBERON:0007280,1.48e-13,3;UBERON:0002240,4.65e-12,3;UBERON:0005174,4.65e-12,3;UBERON:0001137,4.65e-12,3;UBERON:0005090,5.29e-10,2;UBERON:0001630,5.29e-10,2;UBERON:0000341,9.64e-10,2;UBERON:0002081,1.54e-09,2;UBERON:0010227,1.54e-09,2;UBERON:0002133,1.60e-09,2;UBERON:0003127,2.99e-09,2;UBERON:0000948,1.17e-07,24;UBERON:0005498,1.17e-07,24;UBERON:0004140,1.17e-07,24;UBERON:0009881,1.17e-07,24;UBERON:0004141,1.17e-07,24;UBERON:0003084,1.17e-07,24;UBERON:0007005,1.17e-07,24;UBERON:0004139,1.17e-07,24;UBERON:0004291,1.17e-07,24;UBERON:0010314,2.35e-07,132;UBERON:0001723,6.78e-07,3;UBERON:0001033,6.78e-07,3;UBERON:0010056,6.78e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,2.01260960310899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,1.12135520028461,0,0.24666754841716,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0.979352392114111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27429445378818,0,0,0,0,1.18785872333055,0,0,0.422008249231538,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0.331737779793674,0,0.658156191461918,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,132.4253118043,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,11.0077800992479,0,0,0,0,5.14041787388623,0,13.5588444468319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.955323350126,66.6856833873999,11.485968393229,6.38972801596772,24.4658847437845,52.6684639562819,21.5658946682391,0,0,0,0,0,0,0,0.795229689809303,1.22583065500418,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,43.5964149087754,68.1954729476395,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.92562821219883,0,0,0,0.157204305099666,0,0,0,0,0,3.26410682021684,0.2506898940227,3.67614692116154,0.983617892129413,0,0,0.244052529803926,0,1.14681839138014,2.3295100822739,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,5.59869534029676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322951291263702,0,0,0,0,0,0,0,0,0.902523940191087,0,0,0,0,0,0,0,0.206686796501184,0,0,0.548257766857182,77.9051550071192,0,0,1.60710550763486,0.336283722218824,0,2.27662191351298,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0.549451649953598,0,0,0.913158720509496,0,0,0.857718530119876,0,2.67355278346688,0.173858272302579,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,209.11951441169,229.554036130568,28.995360783455,25.2569716390753,0,0,0,0,0,0,0,0,0,0.245148321753905,0,1.37415926980462,2.67341760294377,1.2679671827502,0,0,0,0,0,0,0,0,4.58729283404541,1.57673541466596,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,6.08152804854898,0,0,0,0,0.909344378618873,0,0,0.310298987585686,99.5802695477581,28.5677317756488,0,0.0620747142958579,0,2.22765053973577,7.27621880249589,130.41233199028,199.864247833804,1.88585748440845,3.15577703727776,28.2761303064111,0,0,0,0,7.03922827210363,0.122241444182866,0,0,2.81783311027437,0 | |||
|short_description=p2@TRDN | |||
}} |
Revision as of 13:42, 22 January 2014
Short description: | p2@TRDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRDN_5end |
Coexpression cluster: | C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea |
Association with transcript: | 0bp_to_ENST00000542443_5end |
EntrezGene: | TRDN |
HGNC: | 12261 |
UniProt: | F5H6E3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.70e-23 | 114 |
compound organ | 2.06e-15 | 68 |
primary circulatory organ | 1.14e-13 | 27 |
cardiac chamber | 1.36e-13 | 3 |
valve | 1.48e-13 | 3 |
cardiac mesenchyme | 1.48e-13 | 3 |
cardial valve | 1.48e-13 | 3 |
tunica intima | 1.48e-13 | 3 |
heart layer | 1.48e-13 | 3 |
endocardium | 1.48e-13 | 3 |
endocardial cushion | 1.48e-13 | 3 |
presumptive endocardium | 1.48e-13 | 3 |
spinal cord | 4.65e-12 | 3 |
dorsal region element | 4.65e-12 | 3 |
dorsum | 4.65e-12 | 3 |
muscle structure | 5.29e-10 | 2 |
muscle organ | 5.29e-10 | 2 |
throat | 9.64e-10 | 2 |
cardiac atrium | 1.54e-09 | 2 |
future cardiac atrium | 1.54e-09 | 2 |
atrioventricular valve | 1.60e-09 | 2 |
open tracheal system trachea | 2.99e-09 | 2 |
heart | 1.17e-07 | 24 |
primitive heart tube | 1.17e-07 | 24 |
primary heart field | 1.17e-07 | 24 |
anterior lateral plate mesoderm | 1.17e-07 | 24 |
heart tube | 1.17e-07 | 24 |
heart primordium | 1.17e-07 | 24 |
cardiac mesoderm | 1.17e-07 | 24 |
cardiogenic plate | 1.17e-07 | 24 |
heart rudiment | 1.17e-07 | 24 |
structure with developmental contribution from neural crest | 2.35e-07 | 132 |
tongue | 6.78e-07 | 3 |
gustatory system | 6.78e-07 | 3 |
future tongue | 6.78e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
heart disease | 2.33e-09 | 2 |