FFCP PHASE1:Hg19::chr6:70576369..70576372,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1310 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2196 | |||
|TSSclassifier=strong | |||
|UniProt=Q14993 | |||
|association_with_transcript=-75bp_to_NM_001858,uc003pfc.1_5end | |||
|coexpression_cluster_id=C2867 | |||
|description=CAGE_peak_9_at_COL19A1_5end | |||
|id=chr6:70576369..70576372,+ | |||
|ontology_enrichment_celltype=CL:0000945!1.50e-29!24;CL:0000826!1.50e-29!24;CL:0000236!1.07e-28!14;CL:0000542!5.94e-13!53;CL:0000051!5.94e-13!53;CL:0000838!1.37e-11!52;CL:0000080!4.01e-09!6;CL:0002253!2.16e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000236;2.86e-42;13!CL:0000945;4.47e-23;24!CL:0000542;1.16e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.94e-39,14;CL:0000945,3.63e-23,24;CL:0000826,3.63e-23,24;CL:0000838,8.07e-11,52;CL:0000542,1.28e-10,53;CL:0000051,1.28e-10,53 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.17e-30;3!CL:0000051;1.16e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.14e-13!57;UBERON:0005068!1.14e-13!57;UBERON:0006241!1.14e-13!57;UBERON:0007135!1.14e-13!57;UBERON:0007023!1.90e-12!115;UBERON:0002616!1.91e-11!59;UBERON:0000955!2.48e-10!69;UBERON:0006238!2.48e-10!69;UBERON:0002680!2.51e-09!9;UBERON:0001895!2.51e-09!9;UBERON:0010092!2.51e-09!9;UBERON:0001017!3.04e-09!82;UBERON:0002020!1.13e-08!34;UBERON:0003528!1.13e-08!34;UBERON:0005743!1.26e-08!86;UBERON:0002780!2.57e-08!41;UBERON:0001890!2.57e-08!41;UBERON:0006240!2.57e-08!41;UBERON:0002346!2.71e-08!90;UBERON:0003080!4.56e-08!42;UBERON:0003075!1.01e-07!86;UBERON:0007284!1.01e-07!86;UBERON:0001869!1.11e-07!32;UBERON:0003076!1.27e-07!15;UBERON:0003057!1.27e-07!15;UBERON:0000178!1.52e-07!15;UBERON:0000179!1.52e-07!15;UBERON:0000463!1.52e-07!15;UBERON:0000073!1.96e-07!94;UBERON:0001016!1.96e-07!94;UBERON:0002148!3.52e-07!2;UBERON:0009662!3.52e-07!2;UBERON:0001893!3.88e-07!34;UBERON:0004733!6.71e-07!12;UBERON:0002028!6.71e-07!12;UBERON:0007277!6.71e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.31e-15;6!UBERON:0002680;9.69e-11;9!UBERON:0001895;9.69e-11;9!UBERON:0004733;2.75e-08;12!UBERON:0002028;2.75e-08;12!UBERON:0004732;1.02e-07;13!UBERON:0002346;6.68e-07;4!UBERON:0000923;6.68e-07;4!UBERON:0010316;6.68e-07;4!UBERON:0005291;6.68e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.41e-15,6;UBERON:0006215,1.41e-15,6;UBERON:0002680,1.02e-10,9;UBERON:0001895,1.02e-10,9;UBERON:0010092,1.02e-10,9;UBERON:0004733,2.85e-08,12;UBERON:0002028,2.85e-08,12;UBERON:0007277,2.85e-08,12;UBERON:0004732,1.05e-07,13;UBERON:0003076,8.58e-07,15;UBERON:0003057,8.58e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916960868975415,0.821005894499457,0.865818594450472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63841583378639,0.889509253863555,0.853460445133014,0.800791974072025,2.87376219977242,1.98313461835459,0.954053754535364,1.1384259382189,1.76171156811282,0.764546456250458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0.540031437238115,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,1.52581736317083,0.884634079449797,1.18219047581419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0.216388639742091,0.995261931078505,0,0,0.296521128680622,0.247127877893006,1.04421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10690799240304,0,0,0,0,0,0,0.256916900385838,0,0,0,0,0.276629009856872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.413373593002368,0.19024743058172,0,0,0,0,0,0,0,0,0.455324382702595,0,0.115233987555779,0.171488009437418,0,0.263091094251396,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.187967835959707,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0.124149428591716,0,0,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p9@COL19A1 | |||
}} |
Revision as of 12:34, 22 January 2014
Short description: | p9@COL19A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COL19A1_5end |
Coexpression cluster: | C2867_neuroectodermal_CD19_smooth_carcinoid_cerebellum_umbilical_appendix |
Association with transcript: | -75bp_to_NM_001858, uc003pfc.1_5end |
EntrezGene: | COL19A1 |
HGNC: | 2196 |
UniProt: | Q14993 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.94e-39 | 14 |
lymphocyte of B lineage | 3.63e-23 | 24 |
pro-B cell | 3.63e-23 | 24 |
lymphoid lineage restricted progenitor cell | 8.07e-11 | 52 |
lymphocyte | 1.28e-10 | 53 |
common lymphoid progenitor | 1.28e-10 | 53 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.41e-15 | 6 |
rhombic lip | 1.41e-15 | 6 |
regional part of metencephalon | 1.02e-10 | 9 |
metencephalon | 1.02e-10 | 9 |
future metencephalon | 1.02e-10 | 9 |
segmental subdivision of hindbrain | 2.85e-08 | 12 |
hindbrain | 2.85e-08 | 12 |
presumptive hindbrain | 2.85e-08 | 12 |
segmental subdivision of nervous system | 1.05e-07 | 13 |
posterior neural tube | 8.58e-07 | 15 |
chordal neural plate | 8.58e-07 | 15 |