FFCP PHASE1:Hg19::chr6:15246200..15246214,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3720 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6196 | |||
|TSSclassifier=strong | |||
|UniProt=Q92833 | |||
|association_with_transcript=-312bp_to_ENST00000341776,NM_004973,uc003nbj.2_5end | |||
|coexpression_cluster_id=C1915 | |||
|description=CAGE_peak_2_at_JARID2_5end | |||
|id=chr6:15246200..15246214,+ | |||
|ontology_enrichment_celltype=CL:0000763!3.90e-44!112;CL:0000049!3.90e-44!112;CL:0000037!7.07e-40!172;CL:0000566!7.07e-40!172;CL:0002032!1.18e-36!165;CL:0000837!1.18e-36!165;CL:0000988!1.02e-33!182;CL:0000766!1.36e-32!76;CL:0000557!2.67e-29!71;CL:0000839!1.83e-28!70;CL:0000738!2.00e-28!140;CL:0002009!3.88e-26!65;CL:0002194!4.48e-25!63;CL:0000576!4.48e-25!63;CL:0000040!4.48e-25!63;CL:0000559!4.48e-25!63;CL:0002057!1.06e-24!42;CL:0002031!1.31e-22!124;CL:0000860!7.93e-21!45;CL:0002087!9.09e-20!119;CL:0000219!6.45e-07!390;CL:0000134!9.16e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.74e-20;33!CL:0002057;1.74e-20;33!CL:0000473;1.55e-18;39!CL:0000234;1.55e-18;39!CL:0000576;1.40e-17;48!CL:0000766;3.64e-16;69!CL:0000763;1.80e-14;100!CL:0000738;2.62e-08;136!CL:0002087;3.91e-07;104!CL:0000988;4.27e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.43e-49,108;CL:0000049,1.43e-49,108;CL:0000037,4.28e-43,168;CL:0002032,1.11e-39,161;CL:0000837,1.11e-39,161;CL:0000766,9.29e-38,72;CL:0000988,2.25e-37,177;CL:0000557,3.26e-34,67;CL:0000839,2.68e-33,66;CL:0000738,5.51e-31,136;CL:0002009,7.69e-31,61;CL:0002194,1.05e-29,59;CL:0000576,1.05e-29,59;CL:0000040,1.05e-29,59;CL:0000559,1.05e-29,59;CL:0000473,4.90e-27,48;CL:0000234,4.90e-27,48;CL:0000860,8.76e-26,42;CL:0002057,8.76e-26,42;CL:0002031,8.53e-25,120;CL:0002087,9.79e-22,115;CL:0000134,8.56e-09,354;CL:0000219,1.05e-08,386;CL:0002320,1.38e-07,361;CL:0000034,2.54e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;5.43e-19;42!CL:0000049;1.61e-13;108 | |||
|ontology_enrichment_disease=DOID:8692!7.72e-10!31;DOID:1240!1.10e-09!39;DOID:2531!4.22e-07!51;DOID:0060083!4.22e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.21e-09;31!DOID:1240;4.28e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,3.17e-10,31;DOID:1240,4.59e-10,39;DOID:2531,2.89e-07,51;DOID:0060083,2.89e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.27e-28!102;UBERON:0003061!1.27e-28!102;UBERON:0002193!1.27e-24!112;UBERON:0002371!1.29e-24!80;UBERON:0001474!1.01e-23!86;UBERON:0004765!3.61e-19!101;UBERON:0001434!3.61e-19!101;UBERON:0002405!1.88e-15!115;UBERON:0002204!1.52e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.54e-33,98;UBERON:0003061,5.54e-33,98;UBERON:0002371,7.95e-29,76;UBERON:0001474,4.94e-28,82;UBERON:0002193,1.50e-27,108;UBERON:0004765,1.27e-24,90;UBERON:0002405,1.26e-23,93;UBERON:0001434,4.19e-20,100;UBERON:0002384,1.71e-07,371;UBERON:0002204,3.38e-07,167 | |||
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| |||
|short_description=p2@JARID2 | |||
}} |
Revision as of 10:12, 22 January 2014
Short description: | p2@JARID2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_JARID2_5end |
Coexpression cluster: | C1915_Mast_CD14_testicular_Eosinophils_Neutrophils_Basophils_Peripheral |
Association with transcript: | -312bp_to_ENST00000341776, NM_004973, uc003nbj.2_5end |
EntrezGene: | JARID2 |
HGNC: | 6196 |
UniProt: | Q92833 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.43e-49 | 108 |
common myeloid progenitor | 1.43e-49 | 108 |
hematopoietic stem cell | 4.28e-43 | 168 |
hematopoietic oligopotent progenitor cell | 1.11e-39 | 161 |
hematopoietic multipotent progenitor cell | 1.11e-39 | 161 |
myeloid leukocyte | 9.29e-38 | 72 |
hematopoietic cell | 2.25e-37 | 177 |
granulocyte monocyte progenitor cell | 3.26e-34 | 67 |
myeloid lineage restricted progenitor cell | 2.68e-33 | 66 |
leukocyte | 5.51e-31 | 136 |
macrophage dendritic cell progenitor | 7.69e-31 | 61 |
monopoietic cell | 1.05e-29 | 59 |
monocyte | 1.05e-29 | 59 |
monoblast | 1.05e-29 | 59 |
promonocyte | 1.05e-29 | 59 |
defensive cell | 4.90e-27 | 48 |
phagocyte | 4.90e-27 | 48 |
classical monocyte | 8.76e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.76e-26 | 42 |
hematopoietic lineage restricted progenitor cell | 8.53e-25 | 120 |
nongranular leukocyte | 9.79e-22 | 115 |
mesenchymal cell | 8.56e-09 | 354 |
motile cell | 1.05e-08 | 386 |
connective tissue cell | 1.38e-07 | 361 |
stem cell | 2.54e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.54e-33 | 98 |
blood island | 5.54e-33 | 98 |
bone marrow | 7.95e-29 | 76 |
bone element | 4.94e-28 | 82 |
hemolymphoid system | 1.50e-27 | 108 |
skeletal element | 1.27e-24 | 90 |
immune system | 1.26e-23 | 93 |
skeletal system | 4.19e-20 | 100 |
connective tissue | 1.71e-07 | 371 |
musculoskeletal system | 3.38e-07 | 167 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 3.17e-10 | 31 |
leukemia | 4.59e-10 | 39 |
hematologic cancer | 2.89e-07 | 51 |
immune system cancer | 2.89e-07 | 51 |