FFCP PHASE1:Hg19::chr5:82767555..82767575,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |||
|TSSclassifier=strong | |||
|UniProt=E9PF17 | |||
|association_with_transcript=-7bp_to_ENST00000512590_5end | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_1_at_VCAN_5end | |||
|id=chr5:82767555..82767575,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.26e-23!42;CL:0000860!4.77e-19!45;CL:0000055!2.87e-15!180;CL:0000048!4.51e-15!430;CL:0000034!3.04e-14!444;CL:0000723!6.32e-14!436;CL:0000680!2.04e-12!57;CL:0000056!2.04e-12!57;CL:0000355!2.04e-12!57;CL:0000187!2.61e-12!54;CL:0000393!4.13e-12!60;CL:0000211!4.13e-12!60;CL:0000183!2.83e-11!59;CL:0000359!3.66e-10!32;CL:0000192!6.20e-10!42;CL:0000514!6.20e-10!42;CL:0002194!1.21e-09!63;CL:0000576!1.21e-09!63;CL:0000040!1.21e-09!63;CL:0000559!1.21e-09!63;CL:0000057!4.19e-09!75;CL:0002009!9.87e-09!65;CL:0000766!1.19e-07!76;CL:0002334!3.00e-07!12;CL:0002494!5.80e-07!16;CL:0000557!6.71e-07!71;CL:0000839!8.43e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.93e-20;33!CL:0002057;3.93e-20;33!CL:0000473;9.76e-13;39!CL:0000234;9.76e-13;39!CL:0000576;1.01e-11;48!CL:0000359;7.86e-10;32!CL:0000192;6.06e-08;43!CL:0002334;2.30e-07;12!CL:0000187;2.85e-07;55!CL:0000393;3.68e-07;61!CL:0000211;3.68e-07;61!CL:0002494;4.50e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.36e-23,42;CL:0002057,2.36e-23,42;CL:0000473,3.96e-18,48;CL:0000234,3.96e-18,48;CL:0000048,3.38e-16,427;CL:0000034,2.38e-15,441;CL:0000723,5.10e-15,433;CL:0000680,9.04e-13,58;CL:0000056,9.04e-13,58;CL:0000355,9.04e-13,58;CL:0000187,1.17e-12,55;CL:0000393,1.85e-12,61;CL:0000211,1.85e-12,61;CL:0002194,6.71e-11,59;CL:0000576,6.71e-11,59;CL:0000040,6.71e-11,59;CL:0000559,6.71e-11,59;CL:0000359,2.47e-10,32;CL:0000192,3.13e-10,43;CL:0000514,3.13e-10,43;CL:0002009,9.62e-10,61;CL:0000057,2.86e-09,76;CL:0000766,1.66e-08,72;CL:0000839,7.33e-08,66;CL:0000557,9.16e-08,67;CL:0002334,2.31e-07,12;CL:0002494,4.52e-07,16;CL:0002320,5.68e-07,361;CL:0000134,9.76e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;3.35e-17;42!CL:0000514;6.06e-08;43!CL:0000355;3.10e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!1.14e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;8.85e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.65e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!3.88e-18!167;UBERON:0000468!1.09e-14!659;UBERON:0003081!1.78e-13!216;UBERON:0001134!7.70e-13!61;UBERON:0002036!7.70e-13!61;UBERON:0003082!7.70e-13!61;UBERON:0000467!1.49e-12!625;UBERON:0002385!1.58e-12!63;UBERON:0001015!1.58e-12!63;UBERON:0000383!1.58e-12!63;UBERON:0000480!2.89e-12!626;UBERON:0000914!1.44e-11!83;UBERON:0002329!1.44e-11!83;UBERON:0003077!1.44e-11!83;UBERON:0003059!1.44e-11!83;UBERON:0007282!1.44e-11!83;UBERON:0009618!1.44e-11!83;UBERON:0007285!1.44e-11!83;UBERON:0000479!1.48e-11!787;UBERON:0004290!1.61e-11!70;UBERON:0000922!6.16e-10!612;UBERON:0001009!1.39e-09!113;UBERON:0004535!1.59e-09!110;UBERON:0000926!1.65e-09!448;UBERON:0004120!1.65e-09!448;UBERON:0006603!1.65e-09!448;UBERON:0000948!2.45e-09!24;UBERON:0005498!2.45e-09!24;UBERON:0004140!2.45e-09!24;UBERON:0009881!2.45e-09!24;UBERON:0004141!2.45e-09!24;UBERON:0003084!2.45e-09!24;UBERON:0007005!2.45e-09!24;UBERON:0004139!2.45e-09!24;UBERON:0004291!2.45e-09!24;UBERON:0002050!3.38e-09!605;UBERON:0005423!3.38e-09!605;UBERON:0000923!5.64e-09!604;UBERON:0005291!5.64e-09!604;UBERON:0006598!5.64e-09!604;UBERON:0002532!5.64e-09!604;UBERON:0007100!6.03e-09!27;UBERON:0000486!5.15e-08!82;UBERON:0004872!2.43e-07!84;UBERON:0004573!3.17e-07!33;UBERON:0004571!3.17e-07!33;UBERON:0001637!3.73e-07!42;UBERON:0003509!3.73e-07!42;UBERON:0004572!3.73e-07!42;UBERON:0002390!5.85e-07!102;UBERON:0003061!5.85e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;7.05e-09;22!UBERON:0007100;1.87e-08;25!UBERON:0002385;3.84e-07;31!UBERON:0001015;3.84e-07;31!UBERON:0000383;3.84e-07;31!UBERON:0004573;6.75e-07;33!UBERON:0004571;6.75e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,9.30e-20,315;UBERON:0004120,9.30e-20,315;UBERON:0006603,9.30e-20,315;UBERON:0002204,1.11e-19,167;UBERON:0003081,9.50e-14,203;UBERON:0001134,3.33e-13,62;UBERON:0002036,3.33e-13,62;UBERON:0003082,3.33e-13,62;UBERON:0002385,6.90e-13,64;UBERON:0001015,6.90e-13,64;UBERON:0000383,6.90e-13,64;UBERON:0007524,6.87e-12,73;UBERON:0000479,7.36e-12,773;UBERON:0002329,1.07e-11,71;UBERON:0003059,1.07e-11,71;UBERON:0007282,1.07e-11,71;UBERON:0004290,1.07e-11,71;UBERON:0009618,1.07e-11,71;UBERON:0003077,1.11e-11,72;UBERON:0007285,1.11e-11,72;UBERON:0007503,1.56e-10,78;UBERON:0000922,1.47e-09,592;UBERON:0000948,1.72e-09,24;UBERON:0005498,1.72e-09,24;UBERON:0004140,1.72e-09,24;UBERON:0009881,1.72e-09,24;UBERON:0004141,1.72e-09,24;UBERON:0003084,1.72e-09,24;UBERON:0007005,1.72e-09,24;UBERON:0004139,1.72e-09,24;UBERON:0004291,1.72e-09,24;UBERON:0001009,2.94e-09,112;UBERON:0004535,3.38e-09,109;UBERON:0005423,3.51e-09,581;UBERON:0007100,4.31e-09,27;UBERON:0002050,1.60e-08,564;UBERON:0000923,3.32e-08,560;UBERON:0010316,3.32e-08,560;UBERON:0005291,3.32e-08,560;UBERON:0006598,3.32e-08,560;UBERON:0010317,3.32e-08,560;UBERON:0002532,3.32e-08,560;UBERON:0002390,9.91e-08,98;UBERON:0003061,9.91e-08,98;UBERON:0000486,1.10e-07,83;UBERON:0004573,1.28e-07,33;UBERON:0004571,1.28e-07,33;UBERON:0001637,1.91e-07,42;UBERON:0003509,1.91e-07,42;UBERON:0004572,1.91e-07,42;UBERON:0002384,2.92e-07,371;UBERON:0001434,3.42e-07,100;UBERON:0004872,3.59e-07,83;UBERON:0002371,3.87e-07,76 | |||
|phase1_expression=147.341165588421,69.7967707884605,175.488233099484,60.0439790118782,118.444690023231,162.254965482669,93.7209549222749,7.58063848112197,29.7751616147816,10.3208253330634,4.88460817580699,0,2.63766978228454,7.79728023648294,21.5408294223145,121.690851507771,96.4311244838363,90.5584512080343,99.0503581544729,15.1438901434449,14.6880497695862,50.4662101579721,24.3300589061398,26.2798896139938,23.8531015230125,0.0764134057479513,0.0821005894499457,0,100.701254873319,267.14526107566,201.260960310899,0,0.90361775633475,0.739508020333575,0,0,0.880801318004542,286.415626210981,449.420106780588,314.231740796553,0.223915474239924,0.647787332037959,0.257575567634187,517.036137100132,245.619363397726,297.893227138638,639.412280527538,236.832703500572,285.23956759439,629.758646793187,308.673651367566,328.710299545133,752.579821048038,373.735631795035,343.983275949628,574.892104963115,194.036272691128,224.049313991749,673.078479323615,333.124330104985,387.438298234219,612.204013146545,246.337617162715,311.144067888867,566.488433802996,257.025506785086,272.173322811066,694.702559434895,332.706101952088,366.614769862237,482.503403598795,335.132648748684,307.917902979981,73.3055843502438,79.5140081869263,99.3781979709702,652.966332854576,751.785525564581,990.551790814105,11.4005097496499,8.15558376516269,11.3251775334073,0,1.63841583378639,3.55803701545422,14.9355577898278,2.00197993518006,2.29900975981793,5.94940385506376,0.954053754535364,2.27685187643779,21.7277760067247,3.82273228125229,1.32171328579026,26.9044110231137,3.423993102076,0.393419540227666,1.57204305099666,2.87842098599313,0,0,0,0,0,0.294605907474837,0,0,0,0.130059347559878,1.31550323682941,0.276350017785848,0,0.444859689486181,0,0,0,0,0,0.506039384039006,6.05274287215784,0.651083453856419,0.950452044448374,27.1035214339991,13.6945673935228,22.4875307794223,27.70293848915,9.85353596305256,0.201606743224732,0,0.434473211648397,368.148368134082,69.0821885494745,14.4484694883189,54.9387511624541,37.0990053870558,26.7966060077524,64.418161711139,22.8718389042239,35.0724171678692,84.922359228162,127.27260446934,10.1508783510727,0,0.370784442784429,0.324547393654683,0,0.26591592103773,24.8030249277556,19.4478269665243,10.0293525358983,0,4.30117297553062,0,5.6530794192401,0.419499436209906,0,3.13492449805216,17.313922864345,23.8363396000096,6.6944122552934,0,0,0.488124115096339,0,0,0.0892997282840798,0,0.112611480483322,0,0,1.09921046358244,6.58902087180316,3.87780264148325,0.872188104285069,319.055992988394,128.529969339548,636.35852298833,1178.61167465688,176.270185952583,82.4196072209191,74.7242970107935,74.9869347188166,235.275542762223,70.1842601483075,68.6539993076527,12.2599516392394,60.4984720703999,1.40592859100278,2.80944069147288,0.570471821544449,2.24173020827702,9.0424563955699,11.1692331614011,10.1124580825619,4.49139176760765,5.03620700978249,12.2957679599161,78.4081885806155,67.2566047637675,8.19145225744224,12.2165084108761,8.75347792561144,9.50900751026928,4.15596173226274,28.0945677363736,44.7472181866569,119.589494889651,36.7520273438468,229.618733681743,69.1925939772159,21.6170539182753,90.9276021135739,26.6906050727557,114.134759240214,30.8953981510439,337.21511181805,114.098733043764,126.97418844479,26.6024207076245,12.931684545505,176.794777073274,60.3505068383565,7.79978724628243,0.386521706326594,0.818238361772504,0.573609190778008,9.14802795971965,11.1325005390048,23.0064006881646,21.0431941681202,37.5958067804686,8.75945661781992,31.2899064659632,73.9727078921818,6.90674606762403,7.89425477654364,4.33127689001751,0,0,0,0,0,0,0.134831308160164,0,0,0.738155454624648,14.0241773803446,6.173610169971,13.2307840246988,0,15.725235466842,0.590789906681404,0,2.82873408649161,18.1861878916437,5.5972645558399,0,0.100528972411631,1.29623823221941,0.325808305310325,3.11980435583874,17.3197610430328,3.4779121492523,713.610043565324,0.144366447761074,0.462985512576611,0,0,0,6.64785916435973,1.40402559083543,8.02608276359133,5.62403003920662,44.1792997163001,8.79005602902796,9.04541079298768,5.23141089325132,2.30029607499127,0,0,1.65862492432618,1.29707958075265,1.8936365013957,0.063497894292169,0,0,13.6857956818164,1.43958489784653,0,0,1.68196626518041,9.15516144549888,4.47363543507795,347.353100241149,25.0359512096318,10.988935783228,71.803291477915,31.2022310734098,2.82928111688356,4.25547396069835,3.72991050622539,8.14974563851441,1.62786481617433,4.93944202068461,13.3551835560431,6.75244702610837,27.71831555267,31.0482558371374,69.7226766880235,19.7946522540473,0,0.502257091432126,0,25.6398595375993,6.89171615004683,59.9075001171017,21.8619773068045,11.9176267079222,50.3161306704107,0,13.595122453933,0.431255149719035,21.8183161675572,13.2129204595681,45.5489488501676,12.3726210044431,22.6146958201371,9.56908127479745,0.749007023947182,2.99161459204025,1.24324654030811,59.2599905003446,32.0109133478193,11.9356610427884,93.1709459658016,79.9361869811285,47.3107245101804,79.3047379500668,38.2201546654203,25.0148254461583,21.729344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| |||
|short_description=p1@VCAN | |||
}} |
Revision as of 06:17, 22 January 2014
Short description: | p1@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VCAN_5end |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | -7bp_to_ENST00000512590_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | E9PF17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.36e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.36e-23 | 42 |
defensive cell | 3.96e-18 | 48 |
phagocyte | 3.96e-18 | 48 |
multi fate stem cell | 3.38e-16 | 427 |
stem cell | 2.38e-15 | 441 |
somatic stem cell | 5.10e-15 | 433 |
muscle precursor cell | 9.04e-13 | 58 |
myoblast | 9.04e-13 | 58 |
multi-potent skeletal muscle stem cell | 9.04e-13 | 58 |
muscle cell | 1.17e-12 | 55 |
electrically responsive cell | 1.85e-12 | 61 |
electrically active cell | 1.85e-12 | 61 |
monopoietic cell | 6.71e-11 | 59 |
monocyte | 6.71e-11 | 59 |
monoblast | 6.71e-11 | 59 |
promonocyte | 6.71e-11 | 59 |
vascular associated smooth muscle cell | 2.47e-10 | 32 |
smooth muscle cell | 3.13e-10 | 43 |
smooth muscle myoblast | 3.13e-10 | 43 |
macrophage dendritic cell progenitor | 9.62e-10 | 61 |
fibroblast | 2.86e-09 | 76 |
myeloid leukocyte | 1.66e-08 | 72 |
myeloid lineage restricted progenitor cell | 7.33e-08 | 66 |
granulocyte monocyte progenitor cell | 9.16e-08 | 67 |
preadipocyte | 2.31e-07 | 12 |
cardiocyte | 4.52e-07 | 16 |
connective tissue cell | 5.68e-07 | 361 |
mesenchymal cell | 9.76e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.65e-08 | 14 |