FFCP PHASE1:Hg19::chr4:186456652..186456668,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27295 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20767 | |||
|TSSclassifier=strong | |||
|UniProt=Q53GG5,D6RAF1 | |||
|association_with_transcript=0bp_to_ENST00000284767,ENST00000284770,ENST00000504355,ENST00000512293,ENST00000515261_5end | |||
|coexpression_cluster_id=C9 | |||
|description=CAGE_peak_1_at_PDLIM3_5end | |||
|id=chr4:186456652..186456668,- | |||
|ontology_enrichment_celltype=CL:0000680!4.91e-12!57;CL:0000056!4.91e-12!57;CL:0000355!4.91e-12!57;CL:0000393!2.49e-11!60;CL:0000211!2.49e-11!60;CL:0000187!5.85e-11!54;CL:0000183!7.80e-11!59;CL:0000222!1.10e-10!119;CL:0000055!5.17e-09!180;CL:0000192!2.03e-07!42;CL:0000514!2.03e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002494;9.78e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,5.12e-12,58;CL:0000056,5.12e-12,58;CL:0000355,5.12e-12,58;CL:0000393,2.57e-11,61;CL:0000211,2.57e-11,61;CL:0000187,6.68e-11,55;CL:0000222,1.52e-10,121;CL:0000192,3.05e-07,43;CL:0000514,3.05e-07,43 | |||
|ontology_enrichment_development_v019=CL:0000355;4.47e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.02e-28!115;UBERON:0004111!6.52e-27!241;UBERON:0000025!5.43e-25!194;UBERON:0000483!1.29e-24!309;UBERON:0000477!2.50e-24!286;UBERON:0000119!6.34e-24!312;UBERON:0000481!2.60e-23!347;UBERON:0000475!8.99e-16!365;UBERON:0002385!2.43e-15!63;UBERON:0001015!2.43e-15!63;UBERON:0000383!2.43e-15!63;UBERON:0005743!4.46e-15!86;UBERON:0004872!9.21e-15!84;UBERON:0003075!1.89e-14!86;UBERON:0007284!1.89e-14!86;UBERON:0000073!2.27e-14!94;UBERON:0001016!2.27e-14!94;UBERON:0001134!2.54e-14!61;UBERON:0002036!2.54e-14!61;UBERON:0003082!2.54e-14!61;UBERON:0000468!3.33e-14!659;UBERON:0001017!4.02e-14!82;UBERON:0003914!5.63e-14!118;UBERON:0001009!2.83e-13!113;UBERON:0000490!5.49e-13!138;UBERON:0001049!7.54e-13!57;UBERON:0005068!7.54e-13!57;UBERON:0006241!7.54e-13!57;UBERON:0007135!7.54e-13!57;UBERON:0007100!9.97e-13!27;UBERON:0002346!1.07e-12!90;UBERON:0000922!2.28e-12!612;UBERON:0000955!3.54e-12!69;UBERON:0006238!3.54e-12!69;UBERON:0002049!3.78e-12!79;UBERON:0007798!3.78e-12!79;UBERON:0004535!6.33e-12!110;UBERON:0000467!6.50e-12!625;UBERON:0002616!6.98e-12!59;UBERON:0000480!1.10e-11!626;UBERON:0002050!2.65e-11!605;UBERON:0005423!2.65e-11!605;UBERON:0000923!5.43e-11!604;UBERON:0005291!5.43e-11!604;UBERON:0006598!5.43e-11!604;UBERON:0002532!5.43e-11!604;UBERON:0000055!5.94e-11!69;UBERON:0000948!8.13e-11!24;UBERON:0005498!8.13e-11!24;UBERON:0004140!8.13e-11!24;UBERON:0009881!8.13e-11!24;UBERON:0004141!8.13e-11!24;UBERON:0003084!8.13e-11!24;UBERON:0007005!8.13e-11!24;UBERON:0004139!8.13e-11!24;UBERON:0004291!8.13e-11!24;UBERON:0004290!2.04e-10!70;UBERON:0003103!4.33e-10!69;UBERON:0001981!7.04e-10!60;UBERON:0007500!7.04e-10!60;UBERON:0004537!7.04e-10!60;UBERON:0006965!7.04e-10!60;UBERON:0000153!2.87e-09!129;UBERON:0007811!2.87e-09!129;UBERON:0000033!4.03e-09!123;UBERON:0003080!5.61e-09!42;UBERON:0003056!5.92e-09!61;UBERON:0005256!7.24e-09!143;UBERON:0002100!8.15e-09!216;UBERON:0002780!1.16e-08!41;UBERON:0001890!1.16e-08!41;UBERON:0006240!1.16e-08!41;UBERON:0003104!1.85e-08!238;UBERON:0009142!1.85e-08!238;UBERON:0004121!4.80e-08!169;UBERON:0001048!7.99e-08!168;UBERON:0000486!1.70e-07!82;UBERON:0000914!3.03e-07!83;UBERON:0002329!3.03e-07!83;UBERON:0003077!3.03e-07!83;UBERON:0003059!3.03e-07!83;UBERON:0007282!3.03e-07!83;UBERON:0009618!3.03e-07!83;UBERON:0007285!3.03e-07!83;UBERON:0000924!3.04e-07!173;UBERON:0006601!3.04e-07!173;UBERON:0001637!4.99e-07!42;UBERON:0003509!4.99e-07!42;UBERON:0004572!4.99e-07!42;UBERON:0002020!5.23e-07!34;UBERON:0003528!5.23e-07!34;UBERON:0001893!6.31e-07!34;UBERON:0002791!8.48e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.12e-12;25!UBERON:0000948;1.18e-10;22!UBERON:0007023;1.07e-08;114!UBERON:0002385;5.63e-08;31!UBERON:0001015;5.63e-08;31!UBERON:0000383;5.63e-08;31!UBERON:0001134;8.52e-08;16!UBERON:0002036;8.52e-08;16!UBERON:0000073;2.33e-07;53!UBERON:0002616;2.33e-07;53!UBERON:0002780;6.85e-07;41!UBERON:0001890;6.85e-07;41 | |||
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|phase1_expression=3.81524596468169,1.71280419112787,44.6825460984229,6.00439790118782,60.3397477476839,61.9360352111262,0,0,0.783556884599516,1.96587149201207,1.39560233594486,0,1.58260186937072,0.618831764800233,0.331397375727916,6.72325146451775,15.6700577286234,15.3365118981348,17.5655807564582,8.37223194922158,2.44800829493104,13.1650983020797,26.9061827903193,10.4024563055392,12.9308918782647,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4267791106015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.8852359365131,61.0337782330309,308.276636604752,0.361439152384566,3.50936537445123,2.462390822334,4.7717156823066,2.91980922181582,2.9305793320861,6.20842312895179,8.60780899792635,49.1171533116422,0,0,0,0,0,0,0,0,2.18638648103376,3.4409383804245,3.81854551768354,15.8286223738723,13.0044825225071,2.47606237746061,5.64286409649389,3.87625138753993,4.98072767761394,5.02080919147005,6.44526907374635,11.4040815857777,20.7452748915944,1.47065232138347,11.3419872703446,2.94689103337463,3.81699933464489,4.72968218029953,0,0,1.83201743930407,0,0,0,45.224447604274,19.3744682846807,4.237093786023,0.573673241497627,3.90135220418193,137.366012034865,133.436244662131,139.367164855695,10.5811752035921,53.0760047954571,48.5481852246972,1.81628913173918,2.88087962239999,2.81185718200556,0,0,0.149448680551801,0.704606991862589,0.161872944368132,0,0,1.96534907698829,0.103325781175765,0,0,14.5625817910084,14.3723628363248,0.841680569770331,0,0,0,2.14541457059314,1.65261864797256,106.62625217042,0,0,0.211931901159562,0,0,0,0.18611685633159,0,0.292311015483596,0,0,1.13152239773168,0,0,0.847802961552438,0.193260853163297,0,0.573609190778008,1.34171076742555,2.91565490307268,2.20768491452085,5.70135802584537,2.27088765788066,2.18986415445498,0,0,2.76269842704961,0,0,0.118306800039844,0,0.241011029883482,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0,2.21446636387394,123.412760947032,48.9773073484366,111.726620653012,1.26755034821831,0.982827216677626,4.13552934676983,0,0.737930631258681,6.6911446016425,0,0,0,1.38882667737794,1.95484983186195,4.15973914111831,0,3.70977295920246,19.0202084662031,25.408494805949,30.0940583174797,29.6796477485973,0,0,0,0,0,0,0.16798212819886,0,0.179117045405697,0,0,0,0,1.65862492432618,0.864719720501769,1.76739406796932,39.6226860383135,14.8975485967728,4.68869788840188,10.2643467613623,10.2827492703324,0.300343057843917,2.00078502841405,0,0.43596006883328,0.1466765716419,36.5838955594511,3.57656445851882,3.381211010224,0,0,1.80045161983499,0,2.39779961114489,18.3011831882429,3.25572963234866,18.9345277459577,5.21177894869976,18.4803813346124,38.0136899008046,50.6418153460105,46.1912733058156,121.267238303835,0,0,0,3.83399768786532,1.14861935834114,45.6438096130299,37.6431397335706,15.8216768363795,60.3435446118448,0,0,0,0,2.28685161800217,6.50699269288109,17.0123538811093,9.54842712405788,16.5864075429822,0,0,0,1.10422342547226,0,0.813795071099207,5.19927153827018,0,0.473107245101804,0,3.61135319673263,4.5481500811197,10.3473071292505,1.99267679560631,9.95593510125197,0.0868836144680828,0,31.2260515667879,0,0,0,0,0,0.604780586659361,6.4508030032882,1.84154367945675,2.24528075546459,29.0875868810441,12.2809739776009,100.051138951324,37.1045166112477,1.23367755042124,2.66342587969691,0.0821271560138091,1.55776328755086,0.464841513839837,1.0877350463246,0,0,30.4258287636208,1.27463817604702,8.26083814244372,3.60959690325929,2.84956747286335,3.13739907670742,0,4.11651352682215,4.54933536283586,3.40187410553031,1.0795795805107,3.08454505380579,3.52230368807009,9.53210570324221,0,0,0.895499018888713,0,0,6.66770325302612,16.4007322849853,7.80908147194327,24.4207197605102,4.76161217055386,4.86806049531469,0.574265537996172,0,75.521447026755,166.950330490495,5.5457502161272,14.1223380748039,39.0077500131222,1.50388342815583,3.62541734785571,39.5451551210708,227.743947184354,0,0.384380134730212,0,0.30347334256665,0.464845549297286,0.62962469366128,1.3940745403212,14.1695446881001,21.2922412126809,0,19.2737187868077,77.5736886141593,2.97726695487734,9.49138274156178,10.4846606658104,7.42103594802868,1.71175595213568,0,9.41938368239076,15.2891588945818,6.31435168392926,6.36186972666707,17.3876934153052,68.1594381043935,8.00391066854064,21.9435182590316,27.0521973490726,20.0735278837835,3.95849743083159,6.22183900596336,10.1707304958219,6.61638412255349,18.5762913067542,26.3070531152258,2.31510213706675,6.55894752046633,78.5263158845665,18.8992333840848,23.9441262152405,26.8179228621576,33.0116777804087,76.6842760684688,1.77380532035299,2.11107635297664,1.64647446479951,5.31262443272001,5.24902080367474,0,0,0,22.3120807840967,0,0,0,0.689170200620878,0,0,0,0,0,0,0,0,2.02965735142199,52.9363920394847,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,89.9560220729429,0,0,25.2881170657708,4.29740072527842,0,0,4.97073823883149,14.910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| |||
|short_description=p1@PDLIM3 | |||
}} |
Revision as of 04:19, 22 January 2014
Short description: | p1@PDLIM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDLIM3_5end |
Coexpression cluster: | C9_skeletal_diaphragm_tongue_throat_penis_heart_left |
Association with transcript: | 0bp_to_ENST00000284767, ENST00000284770, ENST00000504355, ENST00000512293, ENST00000515261_5end |
EntrezGene: | PDLIM3 |
HGNC: | 20767 |
UniProt: | Q53GG5D6RAF1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 5.12e-12 | 58 |
myoblast | 5.12e-12 | 58 |
multi-potent skeletal muscle stem cell | 5.12e-12 | 58 |
electrically responsive cell | 2.57e-11 | 61 |
electrically active cell | 2.57e-11 | 61 |
muscle cell | 6.68e-11 | 55 |
mesodermal cell | 1.52e-10 | 121 |
smooth muscle cell | 3.05e-07 | 43 |
smooth muscle myoblast | 3.05e-07 | 43 |