FFCP PHASE1:Hg19::chr4:144106215..144106227,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84640 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20067 | |||
|TSSclassifier=strong | |||
|UniProt=Q8NB14 | |||
|association_with_transcript=117bp_to_ENST00000307017_5end | |||
|description=CAGE_peak_3_at_USP38_5end | |||
|id=chr4:144106215..144106227,+ | |||
|ontology_enrichment_celltype=CL:0000766!7.29e-17!76;CL:0000738!3.71e-15!140;CL:0000557!9.55e-15!71;CL:0002057!3.82e-14!42;CL:0002032!2.33e-13!165;CL:0000837!2.33e-13!165;CL:0000860!2.40e-13!45;CL:0002031!6.91e-13!124;CL:0000037!8.84e-13!172;CL:0000566!8.84e-13!172;CL:0000763!1.20e-12!112;CL:0000049!1.20e-12!112;CL:0002009!2.62e-12!65;CL:0000839!3.44e-12!70;CL:0000988!5.12e-12!182;CL:0002194!2.93e-11!63;CL:0000576!2.93e-11!63;CL:0000040!2.93e-11!63;CL:0000559!2.93e-11!63;CL:0002087!1.81e-10!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.19e-19;33!CL:0002057;9.19e-19;33!CL:0000473;1.92e-14;39!CL:0000234;1.92e-14;39!CL:0000576;4.57e-10;48!CL:0000766;4.62e-10;69!CL:0000840;3.13e-08;5!CL:0000094;1.24e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,6.48e-27,72;CL:0000557,6.96e-24,67;CL:0000839,5.83e-20,66;CL:0000763,5.99e-20,108;CL:0000049,5.99e-20,108;CL:0002009,1.73e-19,61;CL:0000860,8.72e-19,42;CL:0002057,8.72e-19,42;CL:0000473,1.10e-17,48;CL:0000234,1.10e-17,48;CL:0002194,1.32e-17,59;CL:0000576,1.32e-17,59;CL:0000040,1.32e-17,59;CL:0000559,1.32e-17,59;CL:0000738,7.37e-17,136;CL:0002032,2.17e-15,161;CL:0000837,2.17e-15,161;CL:0002031,9.89e-15,120;CL:0000988,3.49e-14,177;CL:0000037,6.87e-14,168;CL:0002087,1.47e-10,115;CL:0000840,4.52e-08,5;CL:0001029,4.52e-08,5;CL:0000094,5.72e-08,8;CL:0000081,6.35e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;3.75e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.37e-12!102;UBERON:0003061!1.37e-12!102;UBERON:0002371!5.23e-12!80;UBERON:0002193!1.15e-11!112;UBERON:0001474!3.89e-10!86;UBERON:0002405!1.70e-08!115;UBERON:0004765!2.24e-08!101;UBERON:0001434!2.24e-08!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.53e-20,76;UBERON:0002390,5.31e-19,98;UBERON:0003061,5.31e-19,98;UBERON:0001474,6.58e-18,82;UBERON:0004765,1.08e-16,90;UBERON:0002193,1.81e-16,108;UBERON:0002405,1.17e-15,93;UBERON:0001434,1.64e-13,100;UBERON:0003081,4.73e-08,203 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0.737201809504527,0,1.09220686065086,0.527533956456907,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0,0.246242116153576,0.204000691244253,0,0,0.136874425072884,0.251085279189606,0.764134057479513,0.903106483949403,0.865818594450472,1.96682138424452,2.30297638858328,5.57338043937874,1.83884244895785,0.6024118375565,1.84877005083394,0.309868802321207,1.13735385989937,0.880801318004542,10.5259127621057,5.81578897663411,7.81239134577067,0.223915474239924,0.32389366601898,0,1.74477886535478,3.02300754951048,2.42584061187816,2.55671940596253,4.11167888021826,1.85823822537062,4.60307827715441,4.09857130446561,2.83778675866302,3.44745680736619,0.645484683583826,2.70852973188684,1.50593871634084,1.36453075028923,1.12361742222542,1.22433556948361,3.20929027076094,1.91801137739712,2.30895910130701,4.3882004676759,4.26224750532694,0.870627715885752,0.56738522469114,1.86846674698672,6.53246529667532,7.82224377630302,3.9093992046921,1.21079900526674,1.10483290796269,0.949387162322653,0.633765858935825,0.425208599930087,0.419317291016752,1.01095768031846,0.450530678524519,0.48217676009124,0,0.19891667719909,0.547992461293902,0,0.546138611262131,0.889509253863555,0,0.400395987036012,0.574752439954483,0,0.954053754535364,0,0.587237189370939,1.14681968437569,0,1.68152568894461,0.790152254325231,0,1.57204305099666,1.43921049299656,0.334372990781356,0.32592226663359,0.473447805734733,0,1.22551502573691,1.17842362989935,0.443067789167242,0,0.896639238079726,0.910415432919148,0.822189523018381,1.10540007114339,0.579606171470105,0.14828656316206,0.267540828089713,0,0.453237370790265,0,0.68725489096526,0,0.318565414324097,1.30216690771284,0,0.451725357233318,0.255973222308837,1.24930726552346,0,0.821127996921047,0.80642697289893,0.802320587350522,0.579297615531196,0,0,0.639312809217652,0,0.50133791063589,0.144846518960824,0,0,0.283604451492204,0.886917589850256,0.43917392846563,0.261958150995425,1.09288586487763,0.370784442784429,5.51730569212962,3.83085422058388,3.0580330919339,1.19245312152671,0,0.74291500265913,0.39752481473341,0,0.347140501607594,0,0.838998872419812,0.825354125820202,0.208994966536811,1.29208379584664,0.35576626268671,0.33472061276467,0.402829317109147,0.760272105718513,0,0,0,0,0.22452937262617,0.450445921933289,1.53316637465883,0.949265659568129,0,3.9534125230819,3.87780264148325,0.436094052142534,0.496971951695318,0.25326102332916,0.264818361626438,0.573673241497627,0,0,0,0,0.311211035399766,0.67355336034844,0.163461903113459,0,0.576175924479999,0,0.312160076830321,0.570471821544449,0.597794722207204,0.117434498643765,0.323745888736263,0,0.408308342509787,0.122834317311768,0.309977343527296,1.18800285728205,0.494533858557114,0,0,0,0.125118519871964,0.277064115484183,0.877955241761676,0,0.300476117813194,0.453728732640084,0.179389635688862,0,0.423863802319124,0,0.103052529238439,0,0.558350568994769,0.337552664482532,0.389748020644795,0.757301322732344,0.276149695926898,0.323292113637624,0.355009592516614,0.201504196455281,0.169560592310488,1.73934767846967,1.36373060295417,2.00763216772303,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0.721879481669586,0.354920400119532,1.01150814046861,0.241011029883482,0.55146986366197,0.653638332277218,0.237270619111097,0.134831308160164,0.588664395376038,1.15424147083917,0,0,0.4115740113314,0,1.26755034821831,2.94848165003288,0.590789906681404,0.441463099414651,0.614942192715568,0.171567810298526,0.98775256867763,1.1240175325762,0.904760751704678,1.20364978706088,0,0,0,0.463721619900307,0.469634776943287,0.288732895522148,0.925971025153221,0.380508304469197,0,3.43394464837949,0,3.27605971194933,1.18904929830983,1.87467667973554,1.00789276919316,0.567100388969546,2.4180801129769,2.61570544662566,0.383382679165211,1.47798971368783,1.67292024625129,1.24396869324463,1.72943944100354,1.51490920111656,0.063497894292169,0,0,1.71072446022705,0.102827492703324,0,0.285826432630578,0,0,0.22001485746285,1.03417372606222,0,0,0.797814349754612,1.04007436911366,0,0,0,0.142977993658148,0,0,0.65147236858747,0,1.58390374586686,0,0,0.399891964728228,0,0,0,0,0,0,0.289562613335158,1.02738161275192,0.358121926479791,0.784596007954691,0.985153801009636,0.646882724578552,0.898401253958239,0.508189248444927,0,0.773288812777695,0,0,0.749007023947182,2.99161459204025,4.14415513436035,0.24538298343828,0,0.271265023699736,0.415941723061614,0.713715955188647,0.473107245101804,0,0.300946099727719,0,0,0.664225598535437,0.553107505625109,0.260650843404249,0,0,0.206768026122887,0.431428401637234,0.213455115606889,0.909382714338778,3.32870879020994,0.604780586659361,0.248107807818777,0.61384789315225,0.280660094433074,0.256278298511402,0,0.321707842287215,0,0.308419387605311,0.532685175939381,0.739144404124282,1.55776328755086,0.813472649219715,0.120859449591622,0.601519410909855,1.74953878978203,0.114814448164607,0.728364672026868,0.393373244878272,0,1.46329140498388,0.784349769176855,0,1.47772280450026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| |||
|short_description=p3@USP38 | |||
}} |
Revision as of 03:17, 22 January 2014
Short description: | p3@USP38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_USP38_5end |
Coexpression cluster: | NA |
Association with transcript: | 117bp_to_ENST00000307017_5end |
EntrezGene: | USP38 |
HGNC: | 20067 |
UniProt: | Q8NB14 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 6.48e-27 | 72 |
granulocyte monocyte progenitor cell | 6.96e-24 | 67 |
myeloid lineage restricted progenitor cell | 5.83e-20 | 66 |
myeloid cell | 5.99e-20 | 108 |
common myeloid progenitor | 5.99e-20 | 108 |
macrophage dendritic cell progenitor | 1.73e-19 | 61 |
classical monocyte | 8.72e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.72e-19 | 42 |
defensive cell | 1.10e-17 | 48 |
phagocyte | 1.10e-17 | 48 |
monopoietic cell | 1.32e-17 | 59 |
monocyte | 1.32e-17 | 59 |
monoblast | 1.32e-17 | 59 |
promonocyte | 1.32e-17 | 59 |
leukocyte | 7.37e-17 | 136 |
hematopoietic oligopotent progenitor cell | 2.17e-15 | 161 |
hematopoietic multipotent progenitor cell | 2.17e-15 | 161 |
hematopoietic lineage restricted progenitor cell | 9.89e-15 | 120 |
hematopoietic cell | 3.49e-14 | 177 |
hematopoietic stem cell | 6.87e-14 | 168 |
nongranular leukocyte | 1.47e-10 | 115 |
immature conventional dendritic cell | 4.52e-08 | 5 |
common dendritic progenitor | 4.52e-08 | 5 |
granulocyte | 5.72e-08 | 8 |
blood cell | 6.35e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.53e-20 | 76 |
hematopoietic system | 5.31e-19 | 98 |
blood island | 5.31e-19 | 98 |
bone element | 6.58e-18 | 82 |
skeletal element | 1.08e-16 | 90 |
hemolymphoid system | 1.81e-16 | 108 |
immune system | 1.17e-15 | 93 |
skeletal system | 1.64e-13 | 100 |
lateral plate mesoderm | 4.73e-08 | 203 |