FFCP PHASE1:Hg19::chr4:77356724..77356733,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57619 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |||
|TSSclassifier=not | |||
|UniProt=Q8TF72,B3KY47 | |||
|association_with_transcript=471bp_to_ENST00000296043,NM_020859,uc011cbx.1_5end | |||
|description=CAGE_peak_47_at_SHROOM3_5end | |||
|id=chr4:77356724..77356733,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.33e-20!5;CL:0000128!5.13e-10!7;CL:0000126!5.13e-10!7;CL:0000127!5.13e-10!7;CL:0002453!5.13e-10!7;CL:0002319!8.14e-09!25;CL:0000133!2.55e-07!59;CL:0002605!8.73e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.36e-23;7!CL:0000586;1.36e-23;7!CL:0002605;1.31e-14;3!CL:0000128;5.22e-07;7!CL:0000126;5.22e-07;7!CL:0000127;5.22e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.28e-23,7;CL:0000586,1.28e-23,7;CL:0002605,1.22e-14,3;CL:0000128,5.08e-07,7;CL:0000126,5.08e-07,7;CL:0000127,5.08e-07,7;CL:0002453,5.08e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.65e-36;10!UBERON:0005564;3.65e-36;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;2.83e-29;22!DOID:2994;2.83e-29;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.94e-29,22;DOID:2994,2.94e-29,22 | |||
|ontology_enrichment_uberon=UBERON:0005743!3.18e-29!86;UBERON:0001017!1.89e-28!82;UBERON:0000073!7.01e-26!94;UBERON:0001016!7.01e-26!94;UBERON:0003075!9.91e-25!86;UBERON:0007284!9.91e-25!86;UBERON:0002346!2.29e-23!90;UBERON:0001049!7.86e-23!57;UBERON:0005068!7.86e-23!57;UBERON:0006241!7.86e-23!57;UBERON:0007135!7.86e-23!57;UBERON:0000955!9.31e-20!69;UBERON:0006238!9.31e-20!69;UBERON:0001893!2.41e-19!34;UBERON:0001869!8.90e-18!32;UBERON:0002616!2.47e-17!59;UBERON:0002791!3.08e-17!33;UBERON:0003056!1.32e-16!61;UBERON:0004121!1.93e-16!169;UBERON:0000924!6.74e-16!173;UBERON:0006601!6.74e-16!173;UBERON:0000153!9.65e-16!129;UBERON:0007811!9.65e-16!129;UBERON:0002780!1.36e-15!41;UBERON:0001890!1.36e-15!41;UBERON:0006240!1.36e-15!41;UBERON:0000033!2.55e-15!123;UBERON:0003080!3.71e-15!42;UBERON:0002020!3.87e-14!34;UBERON:0003528!3.87e-14!34;UBERON:0000956!1.41e-13!25;UBERON:0000203!1.41e-13!25;UBERON:0002619!9.64e-10!22;UBERON:0003076!3.97e-09!15;UBERON:0003057!3.97e-09!15;UBERON:0001950!2.63e-08!20;UBERON:0007023!6.14e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.54e-21;8!UBERON:0000991;9.57e-18;21!UBERON:0003135;1.95e-15;11!UBERON:0003101;3.09e-08;22!UBERON:0000079;3.09e-08;22!UBERON:0003133;1.08e-07;44!UBERON:0004458;9.79e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.12e-21,8;UBERON:0000991,9.30e-18,21;UBERON:0009196,9.30e-18,21;UBERON:0009117,9.30e-18,21;UBERON:0005564,9.30e-18,21;UBERON:0004176,5.41e-17,22;UBERON:0003135,1.88e-15,11;UBERON:0002323,1.47e-08,46;UBERON:0003101,3.04e-08,22;UBERON:0000079,3.04e-08,22;UBERON:0003133,3.11e-08,48;UBERON:0004458,4.43e-08,49;UBERON:0003886,2.12e-07,54;UBERON:0005156,7.84e-07,59;UBERON:0000990,7.84e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,2.28988789704845,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.662648841607426,0.580969714347592,0.10366105501537,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511343412510774,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0.572682980829578,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0.643012593860077,0.412618309791701,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0.221858103073705,0.124192805882767,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,1.38783067318587,1.09265571963696,0,1.52983244612973,0.801652215796681,2.02168778976659,0,0,0,0,0,0,0.23806443146374,0,0,0.112131862580613,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p47@SHROOM3 | |||
}} |
Revision as of 01:43, 22 January 2014
Short description: | p47@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_47_at_SHROOM3_5end |
Coexpression cluster: | NA |
Association with transcript: | 471bp_to_ENST00000296043, NM_020859, uc011cbx.1_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | Q8TF72B3KY47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.28e-23 | 7 |
germ cell | 1.28e-23 | 7 |
astrocyte of the cerebral cortex | 1.22e-14 | 3 |
oligodendrocyte | 5.08e-07 | 7 |
macroglial cell | 5.08e-07 | 7 |
astrocyte | 5.08e-07 | 7 |
oligodendrocyte precursor cell | 5.08e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 8.12e-21 | 8 |
gonad | 9.30e-18 | 21 |
indifferent external genitalia | 9.30e-18 | 21 |
indifferent gonad | 9.30e-18 | 21 |
gonad primordium | 9.30e-18 | 21 |
external genitalia | 5.41e-17 | 22 |
male reproductive organ | 1.88e-15 | 11 |
body cavity | 1.47e-08 | 46 |
male organism | 3.04e-08 | 22 |
male reproductive system | 3.04e-08 | 22 |
reproductive organ | 3.11e-08 | 48 |
body cavity or lining | 4.43e-08 | 49 |
body cavity precursor | 2.12e-07 | 54 |
reproductive structure | 7.84e-07 | 59 |
reproductive system | 7.84e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.94e-29 | 22 |
germ cell cancer | 2.94e-29 | 22 |