FFCP PHASE1:Hg19::chr4:74703963..74703975,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1524 | |||
|description=CAGE_peak_at_chr4:74703963..74703975,+ | |||
|id=chr4:74703963..74703975,+ | |||
|ontology_enrichment_celltype=CL:0000359!2.32e-34!32;CL:0000680!1.55e-24!57;CL:0000056!1.55e-24!57;CL:0000355!1.55e-24!57;CL:0000187!1.82e-24!54;CL:0000192!1.88e-24!42;CL:0000514!1.88e-24!42;CL:0000393!7.15e-23!60;CL:0000211!7.15e-23!60;CL:0000183!1.07e-21!59;CL:0000055!3.43e-19!180;CL:0002539!1.32e-18!10;CL:0000222!4.61e-15!119;CL:0002595!1.33e-12!5;CL:0002494!1.59e-10!16;CL:0000220!6.56e-10!246;CL:0002321!9.89e-10!248;CL:0000048!2.55e-08!430;CL:0002592!2.84e-08!3;CL:0000723!5.58e-08!436;CL:0000034!1.52e-07!444;CL:0000144!1.99e-07!625;CL:0002371!2.01e-07!591;CL:0002582!3.41e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.61e-59;32!CL:0000192;9.88e-34;43!CL:0002539;1.85e-31;10!CL:0000187;4.62e-17;55!CL:0002595;5.00e-17;5!CL:0002592;6.02e-16;3!CL:0002494;1.52e-14;16!CL:0000393;2.78e-14;61!CL:0000211;2.78e-14;61!CL:0002593;1.91e-11;2!CL:0002589;2.30e-10;2!CL:0002596;2.30e-10;2!CL:0000153;3.49e-09;9!CL:0000447;3.49e-09;9!CL:0000214;1.18e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,7.84e-64,32;CL:0000192,2.91e-46,43;CL:0000514,2.91e-46,43;CL:0000187,4.16e-35,55;CL:0000680,4.86e-33,58;CL:0000056,4.86e-33,58;CL:0000355,4.86e-33,58;CL:0002539,2.55e-31,10;CL:0000393,3.55e-31,61;CL:0000211,3.55e-31,61;CL:0000222,3.18e-18,121;CL:0002595,5.22e-17,5;CL:0002592,5.73e-16,3;CL:0002494,1.69e-14,16;CL:0002593,2.01e-11,2;CL:0002589,1.49e-10,2;CL:0002596,3.23e-10,2;CL:0000048,2.26e-09,427;CL:0000153,3.08e-09,9;CL:0000447,3.08e-09,9;CL:0000723,3.89e-09,433;CL:0000034,7.84e-09,441;CL:0002321,1.91e-08,250;CL:0000214,9.99e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000514;9.88e-34;43!CL:0000355;2.02e-16;58 | |||
|ontology_enrichment_disease=DOID:2394!1.22e-14!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.67e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.24e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0004573!3.02e-27!33;UBERON:0004571!3.02e-27!33;UBERON:0001637!8.38e-27!42;UBERON:0003509!8.38e-27!42;UBERON:0004572!8.38e-27!42;UBERON:0001134!2.27e-22!61;UBERON:0002036!2.27e-22!61;UBERON:0003082!2.27e-22!61;UBERON:0002385!2.15e-21!63;UBERON:0001015!2.15e-21!63;UBERON:0000383!2.15e-21!63;UBERON:0004872!3.63e-20!84;UBERON:0002049!1.20e-19!79;UBERON:0007798!1.20e-19!79;UBERON:0001009!5.45e-19!113;UBERON:0000486!1.18e-18!82;UBERON:0004237!1.32e-18!10;UBERON:0004695!1.32e-18!10;UBERON:0002111!1.32e-18!10;UBERON:0004178!1.32e-18!10;UBERON:0004535!1.36e-18!110;UBERON:0004290!2.00e-18!70;UBERON:0001981!3.32e-18!60;UBERON:0007500!3.32e-18!60;UBERON:0004537!3.32e-18!60;UBERON:0006965!3.32e-18!60;UBERON:0000055!1.20e-17!69;UBERON:0000914!1.13e-16!83;UBERON:0002329!1.13e-16!83;UBERON:0003077!1.13e-16!83;UBERON:0003059!1.13e-16!83;UBERON:0007282!1.13e-16!83;UBERON:0009618!1.13e-16!83;UBERON:0007285!1.13e-16!83;UBERON:0003834!1.33e-12!5;UBERON:0001533!1.33e-12!5;UBERON:0003914!1.41e-12!118;UBERON:0001135!1.07e-11!15;UBERON:0005256!9.34e-10!143;UBERON:0000490!5.12e-09!138;UBERON:0001621!2.84e-08!3;UBERON:0007100!3.87e-08!27;UBERON:0000992!6.50e-08!13;UBERON:0000948!6.77e-08!24;UBERON:0005498!6.77e-08!24;UBERON:0004140!6.77e-08!24;UBERON:0009881!6.77e-08!24;UBERON:0004141!6.77e-08!24;UBERON:0003084!6.77e-08!24;UBERON:0007005!6.77e-08!24;UBERON:0004139!6.77e-08!24;UBERON:0004291!6.77e-08!24;UBERON:0000947!8.88e-08!21;UBERON:0010191!8.88e-08!21;UBERON:0002118!9.71e-08!5;UBERON:0004532!9.71e-08!5;UBERON:0003513!1.16e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.84e-45;33!UBERON:0004571;2.84e-45;33!UBERON:0004237;1.85e-31;10!UBERON:0004695;1.85e-31;10!UBERON:0002111;1.85e-31;10!UBERON:0004178;1.85e-31;10!UBERON:0001637;2.06e-31;42!UBERON:0003509;2.06e-31;42!UBERON:0004572;2.06e-31;42!UBERON:0001135;1.48e-20;15!UBERON:0003834;5.00e-17;5!UBERON:0001533;5.00e-17;5!UBERON:0003498;6.02e-16;3!UBERON:0005985;6.02e-16;3!UBERON:0001621;6.02e-16;3!UBERON:0007500;1.00e-14;56!UBERON:0001981;1.00e-14;56!UBERON:0004537;1.00e-14;56!UBERON:0000947;2.57e-14;21!UBERON:0010191;2.57e-14;21!UBERON:0000948;2.70e-13;22!UBERON:0003513;3.44e-12;7!UBERON:0000055;1.42e-11;65!UBERON:0007100;1.51e-11;25!UBERON:0002456;1.91e-11;2!UBERON:0002049;1.56e-10;75!UBERON:0007798;1.56e-10;75!UBERON:0003914;2.20e-10;74!UBERON:0001529;2.30e-10;2!UBERON:0005396;2.30e-10;2!UBERON:0007204;2.30e-10;2!UBERON:0002118;2.30e-09;5!UBERON:0000992;3.12e-09;13!UBERON:0002385;5.47e-09;31!UBERON:0001015;5.47e-09;31!UBERON:0000383;5.47e-09;31!UBERON:0000991;8.69e-08;21!UBERON:0006915;1.18e-07;3!UBERON:0007616;1.18e-07;3!UBERON:0002217;1.18e-07;3!UBERON:0002018;1.18e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,1.57e-50,33;UBERON:0004571,1.57e-50,33;UBERON:0001637,1.77e-47,42;UBERON:0003509,1.77e-47,42;UBERON:0004572,1.77e-47,42;UBERON:0004872,1.73e-37,83;UBERON:0007500,1.16e-35,59;UBERON:0001981,1.16e-35,59;UBERON:0004537,1.16e-35,59;UBERON:0006965,1.16e-35,59;UBERON:0004237,2.55e-31,10;UBERON:0004695,2.55e-31,10;UBERON:0002111,2.55e-31,10;UBERON:0004178,2.55e-31,10;UBERON:0001134,1.35e-30,62;UBERON:0002036,1.35e-30,62;UBERON:0003082,1.35e-30,62;UBERON:0000055,2.84e-30,68;UBERON:0002385,1.73e-29,64;UBERON:0001015,1.73e-29,64;UBERON:0000383,1.73e-29,64;UBERON:0000486,1.58e-26,83;UBERON:0002329,4.21e-26,71;UBERON:0003059,4.21e-26,71;UBERON:0007282,4.21e-26,71;UBERON:0004290,4.21e-26,71;UBERON:0009618,4.21e-26,71;UBERON:0002049,9.64e-26,78;UBERON:0007798,9.64e-26,78;UBERON:0003077,1.13e-25,72;UBERON:0007285,1.13e-25,72;UBERON:0007524,2.97e-25,73;UBERON:0004535,6.26e-25,109;UBERON:0001009,4.18e-24,112;UBERON:0007503,2.52e-23,78;UBERON:0003914,7.97e-23,117;UBERON:0001135,1.83e-20,15;UBERON:0003834,5.22e-17,5;UBERON:0001533,5.22e-17,5;UBERON:0001621,5.73e-16,3;UBERON:0005256,1.14e-14,122;UBERON:0000947,2.98e-14,21;UBERON:0010191,2.98e-14,21;UBERON:0003081,8.05e-13,203;UBERON:0003104,2.39e-12,160;UBERON:0009142,2.39e-12,160;UBERON:0003513,3.55e-12,7;UBERON:0000926,4.74e-12,315;UBERON:0004120,4.74e-12,315;UBERON:0006603,4.74e-12,315;UBERON:0000948,5.07e-12,24;UBERON:0005498,5.07e-12,24;UBERON:0004140,5.07e-12,24;UBERON:0009881,5.07e-12,24;UBERON:0004141,5.07e-12,24;UBERON:0003084,5.07e-12,24;UBERON:0007005,5.07e-12,24;UBERON:0004139,5.07e-12,24;UBERON:0004291,5.07e-12,24;UBERON:0002204,1.19e-11,167;UBERON:0000025,1.48e-11,192;UBERON:0002456,2.01e-11,2;UBERON:0000490,3.14e-11,148;UBERON:0001529,1.49e-10,2;UBERON:0007204,1.49e-10,2;UBERON:0007100,1.51e-10,27;UBERON:0005396,3.23e-10,2;UBERON:0003498,9.02e-10,5;UBERON:0005985,9.02e-10,5;UBERON:0002118,2.74e-09,5;UBERON:0000992,3.30e-09,13;UBERON:0004111,5.31e-09,240;UBERON:0000483,4.72e-08,306;UBERON:0000119,6.50e-08,309;UBERON:0000991,8.92e-08,21;UBERON:0009196,8.92e-08,21;UBERON:0009117,8.92e-08,21;UBERON:0005564,8.92e-08,21;UBERON:0006915,9.99e-08,3;UBERON:0007616,9.99e-08,3;UBERON:0002217,9.99e-08,3;UBERON:0002018,9.99e-08,3;UBERON:0004176,2.14e-07,22;UBERON:0002100,3.89e-07,199 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,8.0679017574213,4.21886169616784,4.38186054232424,5.85519358548608,0,0.408001382488506,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61439152384566,0,4.92478164466801,0,0.486634870302636,0.189069634328136,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1349799145941,0.49333509683432,0,1.21239604862719,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,1.58390374586686,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.355123450626254,0.0821271560138091,3.63478100428535,0.581051892299796,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.193341436584244,0,0.307007349452259,0.275673144969061,0,0,0.0852266274161009,0,0,0,0,0,0,0.31481234683064,4.1822236209636,1.54016790088044,2.12922412126809,5.21959795245044,1.8532421910392,1.71749864090389,0,0,0,0,0,1.27281299170375,1.56989728039846,0,0,0,1.61745985258653,6.34041284692033,8.00391066854064,0,11.4545340126704,3.16950440270266,0,0,0,0.551365343546124,5.30751180192976,7.0152141640602,0,0,1.62328301570163,0,0,0,0,1.426684205925,0,2.9555068941673,4.93942339439853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43574604915363,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.895528817321244,0,0,0,0,0,0.228840068396924,0,3.88593001456951,8.57559869939877,2.86734180894664,0.449803112163605,2.79473322377267,0,0,0.521745061811734,0.300515217994437,1.90402606084398,0.406870733204662,3.09142720644351,1.50374779859484,0,2.3885753321917,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:74703963..74703975,+ | |||
}} |
Revision as of 01:35, 22 January 2014
Short description: | p@chr4:74703963..74703975, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:74703963..74703975, + |
Coexpression cluster: | C1524_Smooth_mesenchymal_Chondrocyte_Aortic_Synoviocyte_Preadipocyte_tenocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 7.84e-64 | 32 |
smooth muscle cell | 2.91e-46 | 43 |
smooth muscle myoblast | 2.91e-46 | 43 |
muscle cell | 4.16e-35 | 55 |
muscle precursor cell | 4.86e-33 | 58 |
myoblast | 4.86e-33 | 58 |
multi-potent skeletal muscle stem cell | 4.86e-33 | 58 |
aortic smooth muscle cell | 2.55e-31 | 10 |
electrically responsive cell | 3.55e-31 | 61 |
electrically active cell | 3.55e-31 | 61 |
mesodermal cell | 3.18e-18 | 121 |
smooth muscle cell of the subclavian artery | 5.22e-17 | 5 |
smooth muscle cell of the coronary artery | 5.73e-16 | 3 |
cardiocyte | 1.69e-14 | 16 |
smooth muscle cell of the internal thoracic artery | 2.01e-11 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 1.49e-10 | 2 |
smooth muscle cell of the carotid artery | 3.23e-10 | 2 |
multi fate stem cell | 2.26e-09 | 427 |
GAG secreting cell | 3.08e-09 | 9 |
carbohydrate secreting cell | 3.08e-09 | 9 |
somatic stem cell | 3.89e-09 | 433 |
stem cell | 7.84e-09 | 441 |
embryonic cell | 1.91e-08 | 250 |
synovial cell | 9.99e-08 | 3 |
Ontology term | p-value | n |
---|