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FFCP PHASE1:Hg19::chr4:41216473..41216484,-: Difference between revisions

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{{FFCP|DPIdataset=robustDPI|EntrezGene=323|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=582|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000513140_5end|description=CAGE_peak_6_at_APBB2_5end|id=chr4:41216473..41216484,-|ontology_enrichment_celltype=CL:0000222!2.31e-10!119;CL:0000055!1.86e-09!180;CL:0000220!4.15e-09!246;CL:0002321!7.08e-09!248|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000222,1.03e-10,121|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!7.40e-19!312;UBERON:0000483!4.89e-18!309;UBERON:0000475!1.16e-15!365;UBERON:0004111!4.84e-15!241;UBERON:0000481!8.52e-15!347;UBERON:0000477!2.11e-14!286;UBERON:0000025!1.56e-13!194;UBERON:0000468!2.37e-12!659;UBERON:0000490!1.31e-11!138;UBERON:0002100!1.38e-11!216;UBERON:0003914!3.78e-11!118;UBERON:0002049!3.35e-10!79;UBERON:0007798!3.35e-10!79;UBERON:0004872!5.48e-10!84;UBERON:0000467!9.56e-10!625;UBERON:0000480!1.24e-09!626;UBERON:0005256!1.36e-09!143;UBERON:0002050!2.46e-09!605;UBERON:0005423!2.46e-09!605;UBERON:0000923!3.23e-09!604;UBERON:0005291!3.23e-09!604;UBERON:0006598!3.23e-09!604;UBERON:0002532!3.23e-09!604;UBERON:0001981!3.89e-09!60;UBERON:0007500!3.89e-09!60;UBERON:0004537!3.89e-09!60;UBERON:0006965!3.89e-09!60;UBERON:0000922!4.34e-09!612;UBERON:0003104!9.23e-09!238;UBERON:0009142!9.23e-09!238;UBERON:0000055!1.34e-08!69|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0000119,7.11e-12,309;UBERON:0000483,3.77e-11,306;UBERON:0000490,8.21e-10,148;UBERON:0000025,8.72e-10,192;UBERON:0002049,1.07e-09,78;UBERON:0007798,1.07e-09,78;UBERON:0004872,1.17e-09,83;UBERON:0003914,2.46e-09,117;UBERON:0004111,4.70e-09,240;UBERON:0007500,5.50e-09,59;UBERON:0001981,5.50e-09,59;UBERON:0004537,5.50e-09,59;UBERON:0006965,5.50e-09,59;UBERON:0000055,9.75e-09,68;UBERON:0005256,3.10e-08,122;UBERON:0003104,1.07e-07,160;UBERON:0009142,1.07e-07,160;UBERON:0001637,3.11e-07,42;UBERON:0003509,3.11e-07,42;UBERON:0004572,3.11e-07,42;UBERON:0010314,3.28e-07,132;UBERON:0002385,5.32e-07,64;UBERON:0001015,5.32e-07,64;UBERON:0000383,5.32e-07,64|phase1_expression=1.45342703416445,1.07050261945492,1.69145284915165,0,3.5756887554183,5.23403114460221,0,0,1.30592814099919,1.72013755551056,1.39560233594486,0.873765488520689,1.31883489114227,0.866364470720326,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,2.43966399395253,0.61560529038394,2.44800829493104,2.19418305034661,0,0.821246550437305,0.376627918784408,0.0764134057479513,0.0821005894499457,0.236132343941038,0,0,0,0,0.90361775633475,0.739508020333575,0.774672005803016,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,3.35350429851818,1.02290049474824,0.722878304769133,1.50401373190767,0.434539556882471,2.3858578411533,1.45990461090791,0.945348171640679,1.33037638477538,2.72287835648691,1.37528029272598,0,0.370784442784429,0,0,0.398873881556595,0,0,0,3.9752481473341,0.860234595106124,3.47140501607594,3.95715559346807,1.67799774483962,3.02629846134074,2.50793959844173,2.06733407335463,2.49036383880697,1.67360306382335,0.805658634218294,0.760272105718513,0.488124115096339,2.57364156242108,3.24056779152704,3.48268940307911,4.4905874525234,3.82879033643296,0,3.79706263827252,2.38162267109529,0,0,0.872188104285069,0.993943903390637,0.886413581652058,2.38336525463794,1.72101972449288,1.06400514659507,1.12135520028461,0,0.98667019366864,2.8008993185979,2.42479209725439,1.47115712802113,1.66493170409425,0.576175924479999,2.10889288650417,0.936480230490962,1.71141546463335,0.597794722207204,1.52664848236894,1.45685649931318,1.40450806702248,0.61246251376468,0.491337269247072,0.826606249406124,1.18800285728205,1.48360157567134,4.55080680969013,0,1.85169725349473,1.12606667884768,1.6623846929051,0.877955241761676,0,1.20190447125277,1.58805056424029,1.25572744982203,0.213557388818567,1.05965950579781,0.600182192168805,1.33968288009971,1.54584324027377,1.48893485065272,1.0126579934476,0.487185025805993,0.252433774244115,0.736399189138395,1.61646056818812,0.710019185033229,0.403008392910561,0.339121184620975,0.773043412653187,0.545492241181669,0.573609190778008,0.365921118388786,0.265059536642971,0.232387885739037,0.310983165046111,0,0.72995471815166,0,0.643240938192885,0,3.25057549622385,2.16563844500876,0.236613600079688,0.505754070234305,0.241011029883482,0,0,0,0,0.196221465125346,0.38474715694639,0.738155454624648,1.40241773803446,1.2347220339942,1.47008711385542,0,0,1.77236972004421,0,1.22988438543114,1.3725424823882,0.878002283269004,0,0.301586917234893,0.648119116109707,1.3032332212413,0,0,0.115930404975077,3.75707821554629,0,0.462985512576611,0.1902541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{{FFCP
|DHSsupport=supported
|DPIdataset=robust
|EntrezGene=323
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=582
|TSSclassifier=strong
|UniProt=
|association_with_transcript=0bp_to_ENST00000513140_5end
|description=CAGE_peak_6_at_APBB2_5end
|id=chr4:41216473..41216484,-
|ontology_enrichment_celltype=CL:0000222!2.31e-10!119;CL:0000055!1.86e-09!180;CL:0000220!4.15e-09!246;CL:0002321!7.08e-09!248
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019_2=CL:0000222,1.03e-10,121
|ontology_enrichment_development_v019=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
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|ontology_enrichment_uberon_v019=
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|short_description=p6@APBB2
}}

Revision as of 00:50, 22 January 2014

Short description:p6@APBB2
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_6_at_APBB2_5end
Coexpression cluster:NA
Association with transcript: 0bp_to_ENST00000513140_5end
EntrezGene:APBB2
HGNC: 582
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser

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CAGE Expression



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  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

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