FFCP PHASE1:Hg19::chr3:197518100..197518146,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84859 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28637 | |||
|TSSclassifier=strong | |||
|UniProt=B4E0T7,E9PD99,Q96II8 | |||
|association_with_transcript=0bp_to_ENST00000334859,ENST00000414675,ENST00000438796,ENST00000441090,NM_032773,uc003fyj.1,uc011bul.1,uc011bum.1,uc011bun.1_5end | |||
|description=CAGE_peak_1_at_LRCH3_5end | |||
|id=chr3:197518100..197518146,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.05e-15!57;UBERON:0005068!1.05e-15!57;UBERON:0006241!1.05e-15!57;UBERON:0007135!1.05e-15!57;UBERON:0007023!2.13e-14!115;UBERON:0000073!2.21e-14!94;UBERON:0001016!2.21e-14!94;UBERON:0000955!3.03e-14!69;UBERON:0006238!3.03e-14!69;UBERON:0002616!7.41e-14!59;UBERON:0001017!2.62e-13!82;UBERON:0002346!1.74e-12!90;UBERON:0003080!2.13e-12!42;UBERON:0005743!2.13e-12!86;UBERON:0003075!2.62e-12!86;UBERON:0007284!2.62e-12!86;UBERON:0002780!4.80e-12!41;UBERON:0001890!4.80e-12!41;UBERON:0006240!4.80e-12!41;UBERON:0000924!7.54e-10!173;UBERON:0006601!7.54e-10!173;UBERON:0004121!1.36e-09!169;UBERON:0001893!2.01e-09!34;UBERON:0002791!3.74e-09!33;UBERON:0000153!1.17e-08!129;UBERON:0007811!1.17e-08!129;UBERON:0003056!1.25e-08!61;UBERON:0002020!1.28e-08!34;UBERON:0003528!1.28e-08!34;UBERON:0001869!1.60e-08!32;UBERON:0000033!1.21e-07!123;UBERON:0002619!6.18e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.89e-09;41!UBERON:0001890;2.89e-09;41!UBERON:0000073;1.01e-08;53!UBERON:0002616;1.01e-08;53!UBERON:0001893;5.09e-08;34!UBERON:0002791;6.80e-08;32!UBERON:0001869;7.77e-08;32!UBERON:0003528;1.29e-07;34!UBERON:0002020;1.29e-07;34!UBERON:0002619;6.17e-07;22!UBERON:0000955;7.02e-07;68!UBERON:0001016;9.53e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.40e-15,56;UBERON:0005068,2.40e-15,56;UBERON:0006241,2.40e-15,56;UBERON:0007135,2.40e-15,56;UBERON:0001016,5.36e-15,89;UBERON:0000073,3.91e-14,53;UBERON:0002616,3.91e-14,53;UBERON:0007023,4.47e-14,114;UBERON:0000955,6.67e-14,68;UBERON:0006238,6.67e-14,68;UBERON:0001017,5.54e-13,81;UBERON:0002346,3.60e-12,86;UBERON:0002780,4.80e-12,41;UBERON:0001890,4.80e-12,41;UBERON:0003080,4.80e-12,41;UBERON:0006240,4.80e-12,41;UBERON:0003075,5.33e-12,82;UBERON:0007284,5.33e-12,82;UBERON:0001893,2.01e-09,34;UBERON:0010371,4.12e-09,104;UBERON:0003056,9.72e-09,61;UBERON:0004121,9.77e-09,171;UBERON:0000924,9.77e-09,171;UBERON:0006601,9.77e-09,171;UBERON:0002791,1.23e-08,32;UBERON:0003528,1.28e-08,34;UBERON:0002020,1.28e-08,34;UBERON:0001869,1.60e-08,32;UBERON:0002619,6.18e-07,22 | |||
|phase1_expression=21.9830838917374,20.3395497696434,19.59266216934,16.0117277365009,16.9845215882369,18.3191090061077,7.59899634504932,18.9515962028049,22.723149653386,21.6245864121328,9.76921635161399,32.3293230752655,26.9042317793023,21.7828781209682,19.8838425436749,25.5483555651675,19.2862248967673,25.5608531635581,27.8121695310589,27.8253591253541,26.9280912442414,29.1512890974622,28.3373627259746,26.006140763848,29.2514350255891,35.3029934555535,36.6989634841257,36.1282486229788,14.5544782434094,16.5046641181801,21.5194411409346,11.9524759182261,28.0121504463773,22.1852406100073,30.1347410257373,26.8699849401227,17.9096267994257,22.1598163412751,17.6479113773725,19.096956622995,25.7502795375913,36.9238779261637,38.636335145128,32.7146037254021,29.8521995514159,38.0856976064871,37.6535039787209,44.4061319063572,32.5191689439859,37.1123186095574,37.3994631532487,26.4860097475215,37.2325335195548,32.2742341791913,31.1480919166986,37.2719832294357,40.3901102085612,28.9893294934159,42.5456610395555,40.4370574115878,44.7535988059329,30.0164683169912,33.5098944804342,35.3766542942136,60.9439401120026,65.8166860641722,69.7560918875044,34.4210671401738,30.2460092683717,29.5376828798959,55.0913547396366,42.3519281385699,61.3937031635316,16.4779123323315,15.5201138974482,14.0471292490612,18.6465527703182,17.2703426767732,22.5015821375912,17.9558028556987,19.2949176883117,16.4397738388171,43.9990611153307,44.2372275122326,53.3705552318133,41.3928315889512,40.4399946906373,31.6113841974966,29.0859744025339,41.978365199556,38.7064818994425,34.6469941728854,37.8450495843977,29.0776922873857,17.9362740154092,21.8608790363314,34.4242097699208,19.6505381374582,28.3730068619323,39.7903859029814,27.051548130588,33.1413464014313,23.3792074089494,31.4177488416189,22.3900489680876,25.9194656662837,39.2665602459273,31.5104646525161,34.0755490606881,32.5587051115279,31.7802520453726,31.8783394308558,25.9501485533606,37.9907975887393,28.2245914273437,30.7068318710404,29.5079780073479,24.0539211837841,33.6516190385939,32.1751068467338,37.1117568698159,27.5631092890028,33.8794017924989,38.2679967351711,29.983374372563,29.8339337575461,34.487375870684,26.6120901056647,26.4765793825672,26.5028659105522,26.8187552945358,15.4261197731836,14.8320571738495,27.1079364288425,31.584288370061,22.0166708820452,42.1501551937083,40.8773291054214,28.4549799663844,25.7206101056574,33.2893837776948,38.5733377340764,17.1218785497495,14.0898088258083,20.446485800245,24.7264226964959,18.6141144726411,26.9494405465036,16.0158575018436,28.6022276023765,37.764857399674,30.9684454238205,24.9941161157468,23.7429335608084,20.9749718104953,22.8347974810256,31.5582399470584,35.4030960061981,36.9996913194179,50.5428125274652,24.1697590265488,19.7670747486813,34.1686880567437,21.3244586600604,25.9245423322163,34.9161937590752,28.9642890687759,34.3465015474133,26.0638283692002,32.2750324253164,28.2130685652827,10.5424333948851,7.75560528296651,24.8573609721245,28.3274012466332,15.9554444697371,43.562620487549,45.6070226990614,19.5067610209096,21.3057488054077,30.9572087616144,21.4600767122929,53.8395091241596,25.7297383653104,24.5192854670188,36.7798549177183,24.77556475264,46.3956435030917,26.2214464537469,31.9464220064892,20.3250205550449,25.483286205697,20.2341180460164,21.6294242321463,29.3982006607046,24.4440291450418,40.090403096197,41.5801000048719,23.2430913521843,35.496293115583,23.7143986799359,22.893711497753,33.5317633256864,43.4990661310167,25.8996796319694,23.5995602765245,28.69546925116,11.5700826823221,47.8970327289261,27.1217883799581,31.1539894704556,33.0100205692843,25.8661848388482,45.6023755880764,25.4980093174278,46.5822676985895,22.2156371767533,47.4575495578935,28.4434186804705,31.0360429092119,36.9209976217279,21.8632053153979,23.7384829234683,23.9643457922488,33.8205189532635,36.4241836144035,26.1023731117334,27.301132274226,24.7493098312074,20.5248888930433,21.699593175304,31.7530302395972,31.2899064659632,25.7296375277154,27.6269842704961,21.825292617503,16.6032280784005,9.58285080322736,11.2951742352328,13.014595613708,10.4779274095774,13.5085255337292,9.96536600266606,9.03369764673102,10.5959591167687,11.1576675514453,31.0025290942352,19.6338483324824,32.925920906512,14.7008711385542,27.8861076608028,17.6908899001973,27.767125614026,18.0999870760007,15.8655085720616,24.5341968726892,18.5477982340577,21.3563331189477,20.708968316796,19.0732197026571,39.7486132478596,23.9185000614303,20.2063878835383,26.7799235492427,28.7651300877763,32.6268171940027,27.7791307545966,25.8745647039054,26.8669495306154,29.1885295112257,24.3754836026523,25.9744734304554,22.8891989924642,11.2480600784132,20.325837512062,19.2814132249646,24.7181522659861,18.0193041878656,20.7026646749214,17.243213326358,38.4771656637798,36.4897483351759,39.3447472828305,40.3975786964416,31.6219513575002,44.6926457903185,42.1982809956169,34.214489204541,22.5192209020279,30.9353349579235,45.7322292208925,39.8065349426031,47.5196475028275,23.3215748910621,19.77857251094,17.8828222925941,12.67954128834,38.0291506716365,30.1621567042962,31.6365070342435,18.4403871630262,22.6458852163684,19.1590511501918,21.7048642156577,18.9345277459577,13.0294473717494,15.9926376934146,15.0470855857352,25.9237864271244,21.7883364650074,30.6917082928915,20.6760427090024,26.1173687544706,35.8417697121154,17.7322393063771,28.7154839585285,35.6592262601796,13.8990054400876,28.3557325119529,30.0822418243025,27.0125197024401,28.5694602292794,25.2284262585635,30.8023287071396,27.442219416026,26.0279707715243,17.0123538811093,21.1070494321279,27.431366321086,14.2311334549965,26.9245313283622,19.8919446449297,25.1517558024237,32.0109133478193,24.9563821803757,37.6427259370761,33.0093629274749,37.2177699480086,35.2595659128067,34.30785536896,11.3703752027992,43.4586899428521,29.8901519340946,25.442945258755,28.1502910876588,27.8037643597092,28.480904176301,29.9813637878187,18.3357070695824,32.5519051300505,13.0344855721892,11.6504807657348,19.0505884797699,22.0815948958711,45.7316680398426,16.2782854771183,21.3992379257021,21.4917044608015,24.9323577772592,10.3892646511494,18.1967438687134,16.5132404541208,22.1743321237285,17.6546505922431,12.3183001167557,19.0957930354763,18.6471017382055,10.3130707608204,18.4851261545017,20.576301984759,21.7666528832644,27.9743760002595,15.788144106405,22.7461433061288,21.9208836979891,16.993812251753,25.0213444955973,21.431806864841,19.8642642813968,15.4227252690289,26.8236973168414,21.0709705019038,21.9193594818733,15.7904441696458,22.8352249816622,14.6904117352776,11.2417243940707,13.0789563809358,29.5213181129735,13.991270970565,26.3784989818169,30.5842012493267,29.9509484711734,40.1985876597321,23.4021688573148,17.6752322828576,23.2009723901093,17.7155909681841,21.9510254858365,21.3646687351022,31.1518710117994,32.0486893550445,24.3748154410049,26.9767068009614,12.3963686520734,21.9096676796221,84.7348410964039,17.3991383071546,13.015675380324,32.7404840703866,27.881490806424,29.5712236969045,25.550689455217,24.358123778102,23.7215000453018,17.4612361825229,23.445977269659,29.1069070741228,32.4071329670502,26.6133702963787,32.523363090578,39.7754059907421,20.40866464518,30.0387004164136,23.3356475275647,22.5021688480261,21.0269780836249,17.4361353290309,24.8542489180999,25.8445881717483,21.9342140668156,10.5650146756755,27.4364821930051,26.0185994794831,23.731704490251,36.9414780175903,13.2687795048244,15.3457809838817,25.4661235077343,37.3860008666581,20.0881273193077,17.0402923954863,19.4369965747247,24.953575283505,19.2568120385717,23.5402893977625,18.0928142676005,22.1663017062547,32.2708995100704,33.7731124651486,34.9934720244983,23.7668618432015,21.4496728171452,18.5114674264248,23.9125253973019,29.2743653416436,21.9012918367913,20.3977870626871,15.6211912140732,16.7457711046616,24.468390628556,33.6091840432756,33.828912115006,25.0930986582578,20.1026726469742,15.1208802426672,32.5181322280651,37.0679526812332,28.8743956579008,35.5308313172496,32.3297524718751,24.958573844925,39.1280138416278,22.9573832729504,18.3613021718191,16.0864510911188,27.094218588657,18.1788286553751,30.3260952362535,20.5411211129873,12.8477514533879,22.557102938106,24.2087242256293,20.0735093879624,19.5745715975316,23.4215430729679,17.518772582544,18.7416866228159,19.0124691708554,22.1909358476838,11.5278976287204,18.374807477086,29.540975747451,6.49093628342359,37.3040604157558,26.7875309666914,23.5797080914357,28.2760785994755,102.064198791341,28.5295063750345,25.5722532125772,19.5770477484906,23.1632451049458,22.4227312532439,35.7893153195867,45.0142132513641,27.8271762557265,21.918915272159,39.4804513199348,71.530027782134,53.5990796130426,26.7048712725533,32.5214410356852,50.5878550444996,21.4617315486647,29.0274774205866,25.0629644545853,16.8818882174868,42.9098814520661,28.7379710816328,53.3457552694257,33.9266461133326,23.0064883441391,45.9111735402747,15.1048101429435,33.5846399985392,40.5999762243484,36.7552837962164,17.5435018702009,16.7835254055235,12.0660180634513,30.6184844052417,23.9602493007943,46.0585520623196,37.8672817283781,102.229763332446,71.1024641357774,42.8544047482644,19.9640711410115,25.1647850728867,30.3943762527355,49.6329167349491,22.6744691135532,25.3620294826866,16.3358912825785,17.0576373917553,21.0540765423067,27.6624732073624,11.72676507241,9.19739683761629,18.5236702546129,21.1088836013199,25.2667139891242,28.0369424074368,30.8791720035551,23.9089703232473,27.9728379005467,24.2647774207231,22.3628947178032,20.9202545722232,50.8513303393914,52.7488823471608,30.517859753652,31.1625373916149,94.2937189204378,44.483018020741,44.9014382873458,59.7174038208799,48.1546588379273,22.7236512353579,26.2734896470559,25.0450712233075,35.2031550324434,34.7234274507464,61.7052651848186,37.9530224421808,33.8680066808695,21.7968958151014,17.626992537532,35.2266552534808,34.4231634110519,41.753078148161,41.8153504205356,51.5143278313925,27.041561237562,17.182414095178,37.629080607121,20.2847951332338,29.5288069329031,21.6702400914237,27.4787980861002,29.0895482003019,23.0744434319518,26.3810124848501,42.9807336987606,30.9593614869329,36.5901938806825,26.0316141330917,34.5043837959539,50.0611539801096,17.9555757363436,36.7139150951686,18.382484081556,22.0458338245782,35.6208814075998,48.0465994013501,29.819343183547,40.506326594331,32.0543887078842,38.3249861127592,33.6821165125713,33.0474225141683,34.6740707881823,63.6445506032377,41.2085190464899,62.5958281528164,35.6705316378564,19.9794389252279,45.2437490061052,46.2904056503601,39.4830163517248,37.5396520938103,35.6257619953354,29.681803839769,59.9948409306466,32.0666896352739,27.9590278865889,28.6770783598294,27.2796491241661,30.6012089097999,16.6342443759925,24.6399396311433,40.5567141802745,36.3663094317907,31.8291233960738,30.6712943611831,28.6653833240138,20.4726241311865,17.7974449548328,41.0667003008247,33.2080340723273,22.8536551167675,43.0652168588334,30.7296979271473,11.1158150386364,16.8885373641112,27.8731177285613,25.8215868442518,36.614669422284,8.14499402630569,12.0991008768177,15.0230185650328,29.9325478906219,46.5464592648752,30.1586798560196,32.0673219001956,17.8793725087261,34.4517911171775,33.35500274128,28.6944745781637,20.8725942218882,53.5659416960671,27.0172153796268,50.4625819369928,39.3527102579836,31.7546253959649,18.9707166622027,37.390327702935,8.29843635101236,41.34535305608,30.3334771767467,26.3457196016577,24.5904473032353,35.1801175600525,35.4427271986794,31.8488551394124,41.062625271732,53.3270551991766,37.3830903679192,38.9965410471888,25.5944974632027,25.3710228163076,34.4243496819541,41.1070080304753,20.9386579531373,16.8600566090477,22.4627594346779,18.8061051637461,18.9307780976252,18.8633992910889,26.7058237437876,27.9240370945358,39.1516937502476,16.9341650613723,24.3481787258815,17.719840866437,19.5168797986317,21.0271732656087,24.7391711689983,24.2210212726965,18.2470731449976,19.4064451627336,26.0872530905867,30.6525522354326,21.7058970936213,17.4954415278005,16.911925305838,20.0857741669453,37.1227007902795,33.4400546506837,16.8011661158525,21.2905337213332,25.2562116574439,65.6161470788985,26.003677104986,57.684788079855,37.3221837510253,21.0836510726413,19.6794103175259,19.0894629515045,22.2070162941044,24.7041157728778,14.0341791730373,14.6651991135081,23.7284267073225,24.4966538946955,18.1931478197442,23.4892632377215,24.612656450368,37.0532608886638,49.2996581363653,69.4883114838889,82.6005240992013,10.8111250119316,25.0688366928794,29.1610730234905,24.3984622943014,29.553609125277,25.3156020101399,16.4579626534382,22.6450318809764,10.4909630789583,61.5856487432643,32.2293815685202,32.6709178531946,40.7318789406772,26.4287324424674,40.566074659012,59.9461274686746,31.4796841217866,48.043462945699,31.164426364035,45.5820886107244,12.8091319725675,30.6828071010895,19.2934650732516,40.9140163864447,49.5938017139547,39.1102954690021,29.1265237221872,52.9350562065608,30.7058200941127,28.5811892768376,52.8246854958871,42.3998143924431,26.5431877532416,22.9285748152099,26.8019545468785,32.036096019242,67.6552727538899,27.8482710962785,37.3043228612316,19.1619815268344,21.8823923145266,23.8335091978094,28.1687698117366,32.52833896775,37.8885849709194,46.8646859168308,30.7963326786764,36.781169912466,65.0900022731681,15.8994752388583,43.6665836982579,13.0144720826119,33.3459936139344,59.9986056183681,64.902758388233,57.0547667982434,55.3219124983653,26.3446039383037,34.1092603165107,45.2728344914785,33.0332902267402,31.2420674423533,21.6294728817662,35.371585801678,38.3046293110508,30.9517712134524,38.3972863739891,69.4000627587217,23.1042522603925,32.0093630884324,54.3221735742588,30.9706678996144,30.4552534464488,103.967246836942,39.2838568717824,26.5236690128687,20.6569357283679,26.2678671489355,21.5113679410139,47.4511322929567,39.8798734272858,38.9516086175655,26.8055036196539,19.5430022968522,22.9329345354584,19.2391342692203,13.741032706134,16.9465915725354,31.7240130222068,28.6429231128929,47.5523916848662,48.5710993059139,30.1781907866116,32.0310748009803,31.8705843283884,36.820422744701,31.5529283059382,31.8531599925681,22.1489833769801,32.3468149545857,10.817297816315,58.3453005774295,19.0898003152317,39.6543103572189,40.6953568448108,53.6772774030918,37.5538923460075,33.9281943907271,49.1169106358658,52.7689303283625,39.9960822476673,31.7605384544123,26.9610992075605,47.4718652360236,30.7348619881042,43.0018749454354,29.1877390057392,30.7321535662934,53.6711349118664,32.7996641119548,31.9915715623406,27.7305377178851,16.439809360704,48.3217407118352,54.0864581220293,44.2177768529915,10.7088271229081,30.997219010805,19.573613600922,23.5665086934833,41.6025053218134,49.573364078893,69.6502329145375,46.1311161544053,34.1174371041569,46.4225641354294,46.5040150819244,67.4131397253017,26.3509877064442,20.8762679152381,43.0509612481007,19.1590738149326,24.6407976781402,48.6281822765322,31.3426037565996,44.9091481337118,28.735353819674,30.3105662292712,30.8915651659104,29.3728410888539,28.1569130884145,52.0748552219011,60.627530569045,28.627541289977,39.2483897502501,39.1093560609944 | |||
|short_description=p1@LRCH3 | |||
}} |
Revision as of 23:39, 21 January 2014
Short description: | p1@LRCH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRCH3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000334859, ENST00000414675, ENST00000438796, ENST00000441090, NM_032773, uc003fyj.1, uc011bul.1, uc011bum.1, uc011bun.1_5end |
EntrezGene: | LRCH3 |
HGNC: | 28637 |
UniProt: | B4E0T7E9PD99Q96II8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 2.40e-15 | 56 |
neural rod | 2.40e-15 | 56 |
future spinal cord | 2.40e-15 | 56 |
neural keel | 2.40e-15 | 56 |
nervous system | 5.36e-15 | 89 |
regional part of nervous system | 3.91e-14 | 53 |
regional part of brain | 3.91e-14 | 53 |
adult organism | 4.47e-14 | 114 |
brain | 6.67e-14 | 68 |
future brain | 6.67e-14 | 68 |
central nervous system | 5.54e-13 | 81 |
neurectoderm | 3.60e-12 | 86 |
regional part of forebrain | 4.80e-12 | 41 |
forebrain | 4.80e-12 | 41 |
anterior neural tube | 4.80e-12 | 41 |
future forebrain | 4.80e-12 | 41 |
neural plate | 5.33e-12 | 82 |
presumptive neural plate | 5.33e-12 | 82 |
telencephalon | 2.01e-09 | 34 |
ecto-epithelium | 4.12e-09 | 104 |
pre-chordal neural plate | 9.72e-09 | 61 |
ectoderm-derived structure | 9.77e-09 | 171 |
ectoderm | 9.77e-09 | 171 |
presumptive ectoderm | 9.77e-09 | 171 |
regional part of telencephalon | 1.23e-08 | 32 |
brain grey matter | 1.28e-08 | 34 |
gray matter | 1.28e-08 | 34 |
cerebral hemisphere | 1.60e-08 | 32 |
regional part of cerebral cortex | 6.18e-07 | 22 |