FFCP PHASE1:Hg19::chr3:197282821..197282869,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=622 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1027 | |||
|TSSclassifier=strong | |||
|UniProt=Q02338,C9JQ90,E9PCG9,C9JB83,C9K0G7 | |||
|association_with_transcript=0bp_to_ENST00000392379,ENST00000432819,ENST00000441275,ENST00000445160,ENST00000446746,ENST00000468710,ENST00000492681,NM_004051,NM_203314,uc003fxr.2,uc003fxs.2,uc003fxt.2_5end | |||
|description=CAGE_peak_1_at_BDH1_5end | |||
|id=chr3:197282821..197282869,- | |||
|ontology_enrichment_celltype=CL:0000542!8.04e-09!53;CL:0000051!8.04e-09!53;CL:0000838!1.76e-08!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.15e-09,53;CL:0000051,6.15e-09,53;CL:0000838,1.35e-08,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!1.30e-08!51;DOID:0060083!1.30e-08!51;DOID:1240!2.16e-08!39;DOID:8692!8.16e-07!31 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,7.27e-09,51;DOID:0060083,7.27e-09,51;DOID:1240,1.26e-08,39;DOID:8692,4.83e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.10e-19!115;UBERON:0001049!1.41e-14!57;UBERON:0005068!1.41e-14!57;UBERON:0006241!1.41e-14!57;UBERON:0007135!1.41e-14!57;UBERON:0002616!3.12e-12!59;UBERON:0003080!1.01e-11!42;UBERON:0002780!1.19e-11!41;UBERON:0001890!1.19e-11!41;UBERON:0006240!1.19e-11!41;UBERON:0000955!2.46e-11!69;UBERON:0006238!2.46e-11!69;UBERON:0001893!5.62e-11!34;UBERON:0001869!6.28e-11!32;UBERON:0002020!1.54e-10!34;UBERON:0003528!1.54e-10!34;UBERON:0000073!1.89e-10!94;UBERON:0001016!1.89e-10!94;UBERON:0002791!1.95e-10!33;UBERON:0002346!2.72e-10!90;UBERON:0003075!4.18e-10!86;UBERON:0007284!4.18e-10!86;UBERON:0001017!4.55e-10!82;UBERON:0000153!7.44e-10!129;UBERON:0007811!7.44e-10!129;UBERON:0005743!1.43e-09!86;UBERON:0000924!1.72e-09!173;UBERON:0006601!1.72e-09!173;UBERON:0002619!2.30e-09!22;UBERON:0004121!3.02e-09!169;UBERON:0003056!5.64e-09!61;UBERON:0000064!6.00e-09!219;UBERON:0000033!9.25e-09!123;UBERON:0001950!9.63e-09!20;UBERON:0000956!1.70e-08!25;UBERON:0000203!1.70e-08!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.05e-10;32!UBERON:0001893;9.07e-10;34!UBERON:0002791;1.79e-09;32!UBERON:0002619;2.09e-09;22!UBERON:0003528;2.71e-09;34!UBERON:0002020;2.71e-09;34!UBERON:0001950;8.83e-09;20!UBERON:0002780;1.18e-08;41!UBERON:0001890;1.18e-08;41!UBERON:0000956;1.63e-08;25!UBERON:0000203;1.63e-08;25!UBERON:0000073;4.10e-08;53!UBERON:0002616;4.10e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.83e-18,114;UBERON:0001049,1.56e-14,56;UBERON:0005068,1.56e-14,56;UBERON:0006241,1.56e-14,56;UBERON:0007135,1.56e-14,56;UBERON:0000073,2.64e-14,53;UBERON:0002616,2.64e-14,53;UBERON:0010371,3.51e-12,104;UBERON:0002780,1.12e-11,41;UBERON:0001890,1.12e-11,41;UBERON:0003080,1.12e-11,41;UBERON:0006240,1.12e-11,41;UBERON:0000955,2.34e-11,68;UBERON:0006238,2.34e-11,68;UBERON:0002346,4.64e-11,86;UBERON:0001893,5.28e-11,34;UBERON:0001869,5.90e-11,32;UBERON:0003075,6.87e-11,82;UBERON:0007284,6.87e-11,82;UBERON:0001016,7.16e-11,89;UBERON:0003528,1.45e-10,34;UBERON:0002020,1.45e-10,34;UBERON:0002791,2.65e-10,32;UBERON:0001017,4.55e-10,81;UBERON:0004121,6.20e-10,171;UBERON:0000924,6.20e-10,171;UBERON:0006601,6.20e-10,171;UBERON:0002619,2.18e-09,22;UBERON:0011216,5.05e-09,223;UBERON:0003056,7.22e-09,61;UBERON:0001950,9.18e-09,20;UBERON:0000956,1.63e-08,25;UBERON:0000203,1.63e-08,25 | |||
|phase1_expression=2.36181893051724,9.63452357509424,4.36958652697511,0,8.49226079411847,1.74467704820074,2.53299878168311,3.15859936713415,24.290263422585,12.532430761577,21.6318362071453,9.17453762946723,8.17677632508206,2.97039247104112,2.98257638155124,2.6893005858071,0,1.46062018077475,0.487932798790507,6.77165819422333,10.6080359447012,6.26909442956176,6.86966369114536,8.34933992944594,5.90050406095573,23.535328970369,26.1900880345327,25.8958470522005,3.14691421479123,4.22212337906934,1.70297735647684,26.6632155098889,21.9880320708123,11.8321283253372,0,28.007338800022,17.9096267994257,3.32397245119126,2.4065333696417,3.90619567288533,7.3892106499175,11.3362783106643,6.95454032612304,0,0,0,0,0,0.309706370895104,0.575384784644301,0.768482119587302,0.236482229888585,0.689491361473237,0,0,0,1.09162460023138,0.224723484445085,0,0.320929027076094,0,0,0.398927315243264,0.426224750532694,0.290209238628584,0,0,0.251248665256743,0.521482918420201,0,2.42159801053347,0,0.316462387440884,0.845021145247767,1.06302149982522,1.25795187305026,3.36985893439485,1.20141514273205,3.05378614724452,1.14005097496499,1.19350006319454,1.27864907635244,10.5597746676794,13.1073266702912,18.6796943311347,10.6682555641627,13.6134635592244,15.518315878771,12.5598525829124,14.3108063180305,11.384259382189,6.45960908308033,10.3213771593812,10.5737062863221,2.80254281490768,18.1735018494803,13.9663936780821,13.7553766962208,9.45766895397742,28.4217042164153,25.7478590640536,36.9289288473092,35.068811113424,11.9209188867136,8.54357131677028,7.75368631042674,8.39491977671548,15.1147757276297,18.8586053961823,32.7231430161316,62.1787540018159,47.2379029748136,25.0604291743882,22.4734295595359,34.4967228556423,25.1546740788597,15.3288197440768,14.7759801557531,15.9402405972287,16.2468361305289,17.5792532541233,21.8603970223126,18.5207396465661,12.4147012819786,16.240994451805,11.1285308460688,11.4957919568947,14.314078768956,8.82552646085574,13.3238451572175,4.87613732627923,4.02420515822182,2.04580098949649,1.44575660953827,1.50401373190767,3.18662341713812,0.795285947051099,0.973269740605272,1.79616152611729,1.55210578223795,2.98638271356629,11.7226272570453,27.6864419102332,24.4717732237723,15.2537275017701,15.6716763569341,14.2265017755186,7.87019060207628,4.0039643754609,6.68623502393217,2.38514888840046,8.60234595106124,3.81854551768354,1.13061588384802,3.77549492588915,3.57653454522088,1.67195973229448,0.516833518338658,1.42306505074684,0.66944122552934,2.41697590265488,4.56163263431108,3.1728067481262,2.20597848207521,0.81014194788176,6.42958043645374,8.98117490504679,4.95490514126618,3.06633274931766,2.84779697870439,2.19842092716489,3.9534125230819,0,17.8798561378439,0.496971951695318,1.64619665163954,1.05927344650575,1.43418310374407,3.90135220418193,2.80338800071154,0,0.98667019366864,6.84664277879486,1.48181739276657,1.79808093424805,1.81628913173918,2.88087962239999,8.20125011418288,4.99456122928513,9.69802096625564,6.27684458317565,16.7931333060584,13.7592002712912,13.9046298635226,3.87892925384297,12.6519346831121,2.06651562351531,3.56400857184616,2.47266929278557,4.55080680969013,9.3420358436111,10.6051751791062,11.0104297487328,5.81834642516784,3.5118209670467,5.21029252858333,4.5071417671979,3.40296549480063,1.4351170855109,2.56268866582281,1.27159140695737,1.50045548042201,1.95799805553034,1.03056216018252,0.558350568994769,1.85653965465393,0.974370051611986,2.01947019395292,1.74894807420369,1.2931684545505,0.355009592516614,0.705264687593482,3.39121184620975,5.7978255948989,4.63668405004419,8.60413786167011,12.3193443190891,9.80720285578991,8.71454571521388,6.21966330092223,10.0928340350251,0,9.38697193978896,3.21620469096443,5.52539685409922,1.85747171212792,8.66255378003503,8.87301000298829,8.93498857413939,11.3275184045237,6.61763836394364,8.49729831960384,6.40630671599961,10.9213359609733,7.6526371398885,8.46443745282059,2.21446636387394,4.20725321410337,7.4083322039652,5.88034845542168,0,0,1.77236972004421,29.5780276607816,10.6999941532509,2.74508496477641,8.23127140564692,24.7283857166763,17.4920411996238,7.12931027720678,2.93227474779292,8.31947828223663,5.77325368101093,4.9850074139283,0.939269553886573,1.87676382089396,6.01881166349594,3.04406643575357,19.7551099489819,27.4715571870359,5.17055712783534,22.6984137185061,15.4576408780277,10.3107217385455,3.86358894857377,8.3647307373008,3.67189943081678,14.5316969256981,24.9198741457387,8.86793828212698,10.3016667795474,4.14656231081544,6.91775776401415,3.1560608356595,33.0189050319279,25.2112360868463,31.6487107467127,32.503764744314,24.8842532342043,9.61097785100536,15.1488009294206,3.81245686774226,3.48768055066624,2.933531432838,3.49033632546,35.7656445851882,8.45302752556,3.19125739901845,9.36066932202295,9.7738802219614,8.5109479213967,9.85762062359568,6.14805372730035,4.88359444852299,11.5253647149308,7.81766842304964,4.26470338491055,21.3827005692026,1.50719688529793,6.97226766880235,2.7992437530976,12.162378064119,13.0586843772353,8.43335757932127,1.6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| |||
|short_description=p1@BDH1 | |||
}} |
Revision as of 23:38, 21 January 2014
Short description: | p1@BDH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BDH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000392379, ENST00000432819, ENST00000441275, ENST00000445160, ENST00000446746, ENST00000468710, ENST00000492681, NM_004051, NM_203314, uc003fxr.2, uc003fxs.2, uc003fxt.2_5end |
EntrezGene: | BDH1 |
HGNC: | 1027 |
UniProt: | Q02338C9JQ90E9PCG9C9JB83C9K0G7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.15e-09 | 53 |
common lymphoid progenitor | 6.15e-09 | 53 |
lymphoid lineage restricted progenitor cell | 1.35e-08 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.83e-18 | 114 |
neural tube | 1.56e-14 | 56 |
neural rod | 1.56e-14 | 56 |
future spinal cord | 1.56e-14 | 56 |
neural keel | 1.56e-14 | 56 |
regional part of nervous system | 2.64e-14 | 53 |
regional part of brain | 2.64e-14 | 53 |
ecto-epithelium | 3.51e-12 | 104 |
regional part of forebrain | 1.12e-11 | 41 |
forebrain | 1.12e-11 | 41 |
anterior neural tube | 1.12e-11 | 41 |
future forebrain | 1.12e-11 | 41 |
brain | 2.34e-11 | 68 |
future brain | 2.34e-11 | 68 |
neurectoderm | 4.64e-11 | 86 |
telencephalon | 5.28e-11 | 34 |
cerebral hemisphere | 5.90e-11 | 32 |
neural plate | 6.87e-11 | 82 |
presumptive neural plate | 6.87e-11 | 82 |
nervous system | 7.16e-11 | 89 |
brain grey matter | 1.45e-10 | 34 |
gray matter | 1.45e-10 | 34 |
regional part of telencephalon | 2.65e-10 | 32 |
central nervous system | 4.55e-10 | 81 |
ectoderm-derived structure | 6.20e-10 | 171 |
ectoderm | 6.20e-10 | 171 |
presumptive ectoderm | 6.20e-10 | 171 |
regional part of cerebral cortex | 2.18e-09 | 22 |
organ system subdivision | 5.05e-09 | 223 |
pre-chordal neural plate | 7.22e-09 | 61 |
neocortex | 9.18e-09 | 20 |
cerebral cortex | 1.63e-08 | 25 |
pallium | 1.63e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 7.27e-09 | 51 |
immune system cancer | 7.27e-09 | 51 |
leukemia | 1.26e-08 | 39 |
myeloid leukemia | 4.83e-07 | 31 |