FFCP PHASE1:Hg19::chr3:50374715..50374736,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11186 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9882 | |||
|TSSclassifier=strong | |||
|UniProt=Q5TZT2 | |||
|association_with_transcript=13bp_to_BT020047,BT020048_5end | |||
|description=CAGE_peak_4_at_RASSF1_5end | |||
|id=chr3:50374715..50374736,- | |||
|ontology_enrichment_celltype=CL:0000144!4.85e-12!625;CL:0002371!8.63e-12!591;CL:0000012!3.26e-11!682;CL:0000548!6.60e-11!679;CL:0000004!6.60e-11!679;CL:0000255!6.60e-11!679;CL:0000192!1.49e-10!42;CL:0000514!1.49e-10!42;CL:0000055!7.81e-10!180;CL:0000680!3.05e-09!57;CL:0000056!3.05e-09!57;CL:0000355!3.05e-09!57;CL:0000359!3.06e-09!32;CL:0000222!1.49e-08!119;CL:0000187!2.48e-08!54;CL:0000003!2.93e-08!722;CL:0000183!2.75e-07!59;CL:0000220!5.99e-07!246;CL:0000393!9.51e-07!60;CL:0000211!9.51e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.38e-10;32!CL:0000192;7.93e-09;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.24e-11,43;CL:0000514,1.24e-11,43;CL:0000359,6.33e-11,32;CL:0000680,7.19e-10,58;CL:0000056,7.19e-10,58;CL:0000355,7.19e-10,58;CL:0000187,1.13e-08,55;CL:0000048,2.50e-08,427;CL:0000723,1.08e-07,433;CL:0000034,1.65e-07,441;CL:0000222,1.74e-07,121;CL:0000393,7.75e-07,61;CL:0000211,7.75e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;7.93e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!1.43e-10!42;UBERON:0003509!1.43e-10!42;UBERON:0004572!1.43e-10!42;UBERON:0000055!4.78e-10!69;UBERON:0002049!6.29e-10!79;UBERON:0007798!6.29e-10!79;UBERON:0001009!2.45e-09!113;UBERON:0001981!3.31e-09!60;UBERON:0007500!3.31e-09!60;UBERON:0004537!3.31e-09!60;UBERON:0006965!3.31e-09!60;UBERON:0004535!4.38e-09!110;UBERON:0000914!5.41e-09!83;UBERON:0002329!5.41e-09!83;UBERON:0003077!5.41e-09!83;UBERON:0003059!5.41e-09!83;UBERON:0007282!5.41e-09!83;UBERON:0009618!5.41e-09!83;UBERON:0007285!5.41e-09!83;UBERON:0004872!8.50e-09!84;UBERON:0004573!1.06e-08!33;UBERON:0004571!1.06e-08!33;UBERON:0000486!4.13e-08!82;UBERON:0004290!1.11e-07!70;UBERON:0003914!2.56e-07!118;UBERON:0001134!2.64e-07!61;UBERON:0002036!2.64e-07!61;UBERON:0003082!2.64e-07!61;UBERON:0005256!3.93e-07!143;UBERON:0002385!4.72e-07!63;UBERON:0001015!4.72e-07!63;UBERON:0000383!4.72e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;6.31e-09;42!UBERON:0003509;6.31e-09;42!UBERON:0004572;6.31e-09;42!UBERON:0004573;4.31e-08;33!UBERON:0004571;4.31e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,5.78e-12,42;UBERON:0003509,5.78e-12,42;UBERON:0004572,5.78e-12,42;UBERON:0001009,6.23e-11,112;UBERON:0004872,8.68e-11,83;UBERON:0007500,9.59e-11,59;UBERON:0001981,9.59e-11,59;UBERON:0004537,9.59e-11,59;UBERON:0006965,9.59e-11,59;UBERON:0002049,1.14e-10,78;UBERON:0007798,1.14e-10,78;UBERON:0004535,1.21e-10,109;UBERON:0000055,2.42e-10,68;UBERON:0004573,4.41e-09,33;UBERON:0004571,4.41e-09,33;UBERON:0000486,1.14e-08,83;UBERON:0002385,1.65e-08,64;UBERON:0001015,1.65e-08,64;UBERON:0000383,1.65e-08,64;UBERON:0001134,1.69e-08,62;UBERON:0002036,1.69e-08,62;UBERON:0003082,1.69e-08,62;UBERON:0007524,4.68e-08,73;UBERON:0007503,4.69e-08,78;UBERON:0002329,6.80e-08,71;UBERON:0003059,6.80e-08,71;UBERON:0007282,6.80e-08,71;UBERON:0004290,6.80e-08,71;UBERON:0009618,6.80e-08,71;UBERON:0003914,6.94e-08,117;UBERON:0003077,1.26e-07,72;UBERON:0007285,1.26e-07,72 | |||
|phase1_expression=3.27021082687002,2.35510576280081,2.11431606143957,1.0007329835313,0,0,5.06599756336621,1.89515962028049,1.30592814099919,1.47440361900905,4.18680700783456,1.09220686065086,1.05506791291381,0.990130823680373,0.994192127183747,0.672325146451775,0,0.730310090387373,0.975865597581014,0.61560529038394,0.816002764977012,0.940364164434263,0.286235987131057,0.136874425072884,0.376627918784408,0.229240217243854,0.410502947249729,0.629686250509434,1.18009283054671,1.53531759238885,1.08371286321253,3.67768489791571,0.6024118375565,0.369754010166788,0.154934401160603,0.710846162437108,0.293600439334847,1.10799081706375,0.601633342410425,0.651032612147555,0,0,0.257575567634187,0,0,0.242584061187816,0.232429036905685,0,0.309706370895104,0.575384784644301,0,0.236482229888585,0,0,0,0.376484679085209,0,0.674170453335254,0.612167784741805,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0.521482918420201,0.217188844705117,0,0,0,0.845021145247767,1.06302149982522,0.419317291016752,0.561643155732475,0.300353785683013,0.64290234678832,0.855038231223746,0.59675003159727,0,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0,0.587237189370939,0.764546456250458,1.32171328579026,2.24203425192614,0,1.57367816091066,1.57204305099666,3.28962398399215,0.668745981562712,4.88883399950386,2.8406868344084,0,0.557052284425868,2.3568472597987,1.55073726208535,0,1.0247305578054,1.04047478047903,0.493313713811028,0,0,0.889719378972363,0,2.09071047609954,0.906474741580529,2.68254345521345,0.68725489096526,1.77113784413652,0.637130828648193,0,0,0,0.127986611154418,1.24930726552346,0.236777252044017,0,2.82249440514625,2.67440195783507,1.30341963494519,0,1.34140171940727,1.66221330396589,2.1686349143074,2.00535164254356,3.47631645505977,0,4.86634870302636,0.567208902984407,1.77383517970051,0.43917392846563,0.458426764241994,0,3.33705998505986,1.29818957461873,0.522389211897802,0.26591592103773,2.14641561874808,2.28797964312051,0.74291500265913,1.19257444420023,0.860234595106124,0.694281003215189,0,0,0.550236083880135,1.25396979922086,0.516833518338658,1.06729878806013,0.33472061276467,0.402829317109147,3.04108842287405,1.95249646038536,1.10298924103761,0.81014194788176,0.446498641420399,0.673588117878509,0.450445921933289,0,0,1.09921046358244,0,0,1.74437620857014,3.47880366186723,1.2663051166458,2.64818361626438,1.14734648299525,2.12801029319014,1.68203280042692,0,3.20667812942308,0.311211035399766,0.942974704487816,0.980771418680752,0.151357427644931,0.576175924479999,0.468642863667593,0.936480230490962,0.570471821544449,0.448346041655403,0.469737994575059,0.485618833104395,0.561803226808994,0,0.61417158655884,1.03325781175765,2.37600571456411,1.48360157567134,0.910161361938026,1.43723628363248,0.673344455816265,0.500474079487857,1.38532057742091,1.31693286264251,0.612975591598039,1.35214253015937,2.04177929688038,1.97328599257748,0.213557388818567,1.69545520927649,0.900273288253207,0.618315175430633,0.515281080091258,0.558350568994769,2.86919764810153,0.584622030967192,2.01947019395292,1.84099797284599,0.969876340912871,0,1.41052937518696,1.52604533079439,2.70565194428616,3.54569956768085,1.43402297694502,0.121973706129595,0,0,0.207322110030741,0.252320850875628,0.36497735907583,1.56449532329816,5.14592750554308,1.38134921352481,1.39310378409594,0.721879481669586,1.18306800039844,0.842923450390509,1.20505514941741,1.54411561825352,0.871517776369625,2.60997681022206,0.808987848960987,0.98110732562673,0.38474715694639,0.738155454624648,2.80483547606892,1.6462960453256,4.41026134156626,0,0,0,0,0.737930631258681,1.02940686179115,0.878002283269004,0,0.703702806881416,0.370353780634118,0.977424915930974,0,1.44331342025273,0.927443239800615,0.352226082707465,1.58803092537181,2.77791307545966,0.951270761172991,0.790204397959275,0.858486162094873,0.246217006087397,0.468008530278475,0.445893486866185,2.81201501960331,0.839910640994298,1.55952606966625,2.14940454486836,1.74380363108377,1.91691339582606,0,0.264145302039678,1.24396869324463,0.288239906833923,0.6312121671319,0.571481048629521,0.763976851116555,1.17217447210047,0,0.719792448923265,0.300343057843917,0,0.672786506072164,0,0.5867062865676,0.646358578788889,0,0.845302752556,1.06375246633948,4.16029747645464,1.02882949704857,1.41849132023278,2.1313774321288,0.428933980974443,2.71310802695722,0,0.65147236858747,1.06617584622764,0,0.602878754119172,2.61460037580088,0.699810938274399,0,0,0,2.39624855491583,0,0,2.02693829334611,2.05476322550383,1.43248770591916,0.784596007954691,2.36436912242313,2.37190332345469,2.18183161675572,0,0,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0.414415513436035,0.36807447515742,1.00034104211935,0,3.53550464602372,1.42743191037729,1.41932173530541,1.7571212248907,0.902838299183157,0,1.03473071292505,1.99267679560631,3.31864503375066,1.39013783148933,0,0.686286847621712,1.03384013061444,0.862856803274467,2.34800627167578,2.72814814301633,0,2.41912234663744,2.97729369382532,1.84154367945675,1.68396056659844,2.05022638809122,0.511707249066704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| |||
|short_description=p4@RASSF1 | |||
}} |
Revision as of 19:02, 21 January 2014
Short description: | p4@RASSF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RASSF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_BT020047, BT020048_5end |
EntrezGene: | RASSF1 |
HGNC: | 9882 |
UniProt: | Q5TZT2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.24e-11 | 43 |
smooth muscle myoblast | 1.24e-11 | 43 |
vascular associated smooth muscle cell | 6.33e-11 | 32 |
muscle precursor cell | 7.19e-10 | 58 |
myoblast | 7.19e-10 | 58 |
multi-potent skeletal muscle stem cell | 7.19e-10 | 58 |
muscle cell | 1.13e-08 | 55 |
multi fate stem cell | 2.50e-08 | 427 |
somatic stem cell | 1.08e-07 | 433 |
stem cell | 1.65e-07 | 441 |
mesodermal cell | 1.74e-07 | 121 |
electrically responsive cell | 7.75e-07 | 61 |
electrically active cell | 7.75e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
artery | 5.78e-12 | 42 |
arterial blood vessel | 5.78e-12 | 42 |
arterial system | 5.78e-12 | 42 |
circulatory system | 6.23e-11 | 112 |
splanchnic layer of lateral plate mesoderm | 8.68e-11 | 83 |
epithelial tube open at both ends | 9.59e-11 | 59 |
blood vessel | 9.59e-11 | 59 |
blood vasculature | 9.59e-11 | 59 |
vascular cord | 9.59e-11 | 59 |
vasculature | 1.14e-10 | 78 |
vascular system | 1.14e-10 | 78 |
cardiovascular system | 1.21e-10 | 109 |
vessel | 2.42e-10 | 68 |
systemic artery | 4.41e-09 | 33 |
systemic arterial system | 4.41e-09 | 33 |
multilaminar epithelium | 1.14e-08 | 83 |
muscle tissue | 1.65e-08 | 64 |
musculature | 1.65e-08 | 64 |
musculature of body | 1.65e-08 | 64 |
skeletal muscle tissue | 1.69e-08 | 62 |
striated muscle tissue | 1.69e-08 | 62 |
myotome | 1.69e-08 | 62 |
dense mesenchyme tissue | 4.68e-08 | 73 |
epithelial vesicle | 4.69e-08 | 78 |
somite | 6.80e-08 | 71 |
presomitic mesoderm | 6.80e-08 | 71 |
presumptive segmental plate | 6.80e-08 | 71 |
dermomyotome | 6.80e-08 | 71 |
trunk paraxial mesoderm | 6.80e-08 | 71 |
epithelial tube | 6.94e-08 | 117 |
paraxial mesoderm | 1.26e-07 | 72 |
presumptive paraxial mesoderm | 1.26e-07 | 72 |