FFCP PHASE1:Hg19::chr21:45138941..45139084,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8566 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8819 | |||
|TSSclassifier=strong | |||
|UniProt=O00764,A8MV33,F2Z3F8 | |||
|association_with_transcript=0bp_to_ENST00000291565,ENST00000398081,ENST00000398085,ENST00000463355,ENST00000468090,ENST00000476084,NM_003681,uc002zdm.3,uc002zdn.3,uc010gpj.2_5end | |||
|description=CAGE_peak_1_at_PDXK_5end | |||
|id=chr21:45138941..45139084,+ | |||
|ontology_enrichment_celltype=CL:0002009!5.64e-12!65;CL:0002194!3.15e-11!63;CL:0000576!3.15e-11!63;CL:0000040!3.15e-11!63;CL:0000559!3.15e-11!63;CL:0000766!1.66e-10!76;CL:0000557!2.48e-10!71;CL:0002057!1.59e-08!42;CL:0000839!1.91e-08!70;CL:0000860!2.34e-08!45;CL:0002368!2.40e-07!13;CL:0000192!6.93e-07!42;CL:0000514!6.93e-07!42;CL:1000497!6.95e-07!18;CL:0002518!6.95e-07!18;CL:0002076!7.21e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.48e-10;39!CL:0000234;4.48e-10;39!CL:0000860;5.83e-09;33!CL:0002057;5.83e-09;33!CL:0002368;2.48e-07;13!CL:1000497;4.60e-07;17!CL:0002518;4.60e-07;17!CL:1000507;5.51e-07;10!CL:1000494;5.51e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,5.56e-12,61;CL:0000473,1.15e-11,48;CL:0000234,1.15e-11,48;CL:0002194,3.18e-11,59;CL:0000576,3.18e-11,59;CL:0000040,3.18e-11,59;CL:0000559,3.18e-11,59;CL:0000766,1.99e-10,72;CL:0000557,2.88e-10,67;CL:0000860,1.59e-08,42;CL:0002057,1.59e-08,42;CL:0000839,2.41e-08,66;CL:0002368,2.40e-07,13;CL:1000497,4.53e-07,17;CL:0002518,4.53e-07,17;CL:1000507,5.50e-07,10;CL:1000494,5.50e-07,10;CL:0000192,7.67e-07,43;CL:0000514,7.67e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!3.48e-18!511;UBERON:0000923!7.37e-16!604;UBERON:0005291!7.37e-16!604;UBERON:0006598!7.37e-16!604;UBERON:0002532!7.37e-16!604;UBERON:0002050!1.19e-15!605;UBERON:0005423!1.19e-15!605;UBERON:0000922!2.45e-14!612;UBERON:0000480!3.34e-14!626;UBERON:0000467!6.26e-14!625;UBERON:0000468!2.86e-13!659;UBERON:0002204!3.71e-11!167;UBERON:0000926!1.10e-10!448;UBERON:0004120!1.10e-10!448;UBERON:0006603!1.10e-10!448;UBERON:0002371!1.95e-09!80;UBERON:0000481!2.42e-09!347;UBERON:0001474!4.69e-09!86;UBERON:0004765!9.49e-09!101;UBERON:0001434!9.49e-09!101;UBERON:0006554!4.71e-08!44;UBERON:0001008!1.10e-07!45;UBERON:0005256!8.00e-07!143;UBERON:0002100!8.73e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;3.26e-07;30!UBERON:0001008;3.26e-07;30!UBERON:0004211;5.51e-07;10!UBERON:0009773;5.51e-07;10!UBERON:0001231;5.51e-07;10!UBERON:0004810;5.51e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005423,1.13e-14,581;UBERON:0000922,8.21e-14,592;UBERON:0002050,3.20e-11,564;UBERON:0002204,7.00e-11,167;UBERON:0000923,8.45e-11,560;UBERON:0010316,8.45e-11,560;UBERON:0005291,8.45e-11,560;UBERON:0006598,8.45e-11,560;UBERON:0010317,8.45e-11,560;UBERON:0002532,8.45e-11,560;UBERON:0004765,1.72e-09,90;UBERON:0002371,2.51e-09,76;UBERON:0006554,5.86e-09,47;UBERON:0001474,6.28e-09,82;UBERON:0001008,1.42e-08,48;UBERON:0001434,1.85e-08,100;UBERON:0004810,5.50e-07,10 | |||
|phase1_expression=55.4119056775198,113.473277662221,52.1531295155093,73.0535077977852,75.9833860526389,64.5530507834273,207.705900098015,58.1182283552684,107.086107561934,220.914808914856,539.400302842687,133.467678371535,140.324032417537,60.8930456563429,101.407596972742,61.8539134735633,51.229034882038,60.615737502152,53.6726078669558,36.1975910745756,69.360235023046,70.2138576110917,29.7685426616299,31.3442433416905,43.4377532998018,55.6289593845085,48.357247186018,48.8793951957948,82.9998624151187,48.3625041602488,75.2406359316129,199.514405711927,227.109262758801,211.869047825569,21.8457505636451,30.8507234497705,18.2032272387605,114.677049566099,111.903801688339,93.9657070199638,122.257848934999,132.796403067782,121.060516788068,87.8205362228571,126.588441135751,102.855641943634,104.825495644464,181.736206505647,184.894703424377,83.7184861657458,97.5972291875873,108.781825748749,89.6338769915208,129.096936716765,130.009427130568,111.439465009222,171.930874536443,155.958098204889,134.982996535568,185.817906677058,161.112955701358,41.2314125233395,65.4240796998952,53.2780938165868,183.702448051894,211.067303585104,206.154164417535,81.4045675431848,109.511412868242,92.9568255337899,124.106898039841,208.813419604949,175.636625029691,43.51858898026,46.3477373923795,52.6243200226023,68.071150474776,67.5796017786778,54.4859738903102,56.7175360045085,68.8251703108852,61.0098273573877,31.6793240030381,26.7607919518444,27.5747868697702,26.4572737991234,27.2269271184488,21.2658402783159,26.4417949113945,27.6675588815256,46.6754634669748,51.6768726646426,43.9614212344013,29.0776922873857,81.8342501953043,17.3833495951551,24.785431034343,40.8731193259131,35.3634578279156,36.2794694997772,36.1773715963285,29.8272117612882,40.9136129656614,31.8633906691596,30.0498025624334,34.3377536604613,17.873055008491,46.3690577406944,43.4398220849993,33.3808946345463,42.5579027390206,30.4293240021805,30.8436051377086,34.2452259954833,25.0885257131944,35.0125868935479,37.5556083729883,38.1426464485719,22.5187525897358,26.4409293889,32.5541726928209,22.810849066761,19.875915718266,20.2218845623981,26.2354525759926,23.4409479523577,20.5281999230262,31.652258686283,39.3137087801756,26.3580415066694,68.2659225679093,50.9732653374763,85.9236415588524,84.2153225056039,61.1632250975785,64.3118544186057,50.8983006112704,77.8615792484217,42.6352025409946,51.88467900624,52.0860279160237,78.3254871476322,197.083750966265,155.72946596946,229.779554707516,220.274117683573,291.576807417871,33.6271780270532,26.883760806666,23.4018225837626,37.5660949923073,62.7971254427471,39.2268766816582,29.9613209219725,41.1109447485708,47.3203032136916,46.1878876046351,35.4030960061981,28.8170672776235,24.0998841190563,34.2404919542775,41.8149658145182,41.0024256680925,29.7807095080154,48.6085168729056,18.9315423962249,26.7189953425142,24.8871371868142,38.3291593664708,45.5647516592702,48.9148656294187,198.988430328456,209.401342640096,203.219828298421,63.1154378653055,53.0581843874589,49.1238060817042,49.0490621480471,67.3869926176878,56.628437614373,181.473292740498,87.8136472365089,39.8350125311701,55.2313755485721,47.7308757091299,82.6411554941325,80.6646294271998,53.8939293217732,47.4483316782087,67.8861467637895,52.4564868736822,39.8102950402363,37.8782689821428,40.3093815235453,38.9934467096846,69.5242235984607,42.0535929385365,57.0241371495386,58.1077283804609,80.0941998505463,140.130537654166,49.6591536164495,37.7857930013332,37.9577838213331,56.6281130936281,60.0716079766079,58.7430810324793,55.0146088326102,35.6985375020835,44.2063794854435,55.9500219061243,56.717217159952,43.4881673386212,48.1787809885327,60.1157445951035,51.8143339980687,61.3853132515551,40.6418376533024,40.594005301254,45.7458340797238,42.9561606945103,44.3309232201617,63.0765403395014,88.1269490424634,106.370987030426,80.5920913043101,46.1060609169871,38.9637518865167,44.7346680047646,41.0497777860867,42.1375820962299,54.7466038613745,56.3218316387337,80.4051172741107,82.8809528114883,59.9034627161253,87.3474172820198,168.823803656857,174.485154230835,167.984687828787,155.624795525408,164.934739177951,161.344020995546,141.842536184493,141.475676355375,151.975126993824,29.5262181849859,96.7668239243776,129.23423955806,202.872021712048,78.5881215895351,86.4887950676311,60.2605704815032,21.1902287719032,73.7930631258681,65.5389035340368,60.4724072601527,178.718787679615,86.9575611360607,81.8481855201402,67.7681275045475,125.832109018829,50.5159697088456,40.1119201213766,67.5099991855975,50.9613560596591,56.0212470217699,36.7190513812775,238.641728183701,215.480026685813,254.834601300456,301.631497764477,311.085022670308,84.3604505880993,130.858077866912,83.9308575674928,46.5704318054811,47.6639659162898,139.167912536972,26.6038148463809,28.1754988842323,65.3083563953432,46.4066250002616,72.2106719198893,34.923841860693,55.006333280392,58.6087236050235,78.6933251704444,62.1078055928074,67.5771880148814,27.7251639651661,52.0288231362474,55.8028888106599,37.5492023403264,97.47087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| |||
|short_description=p1@PDXK | |||
}} |
Revision as of 14:04, 21 January 2014
Short description: | p1@PDXK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDXK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000291565, ENST00000398081, ENST00000398085, ENST00000463355, ENST00000468090, ENST00000476084, NM_003681, uc002zdm.3, uc002zdn.3, uc010gpj.2_5end |
EntrezGene: | PDXK |
HGNC: | 8819 |
UniProt: | O00764A8MV33F2Z3F8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 5.56e-12 | 61 |
defensive cell | 1.15e-11 | 48 |
phagocyte | 1.15e-11 | 48 |
monopoietic cell | 3.18e-11 | 59 |
monocyte | 3.18e-11 | 59 |
monoblast | 3.18e-11 | 59 |
promonocyte | 3.18e-11 | 59 |
myeloid leukocyte | 1.99e-10 | 72 |
granulocyte monocyte progenitor cell | 2.88e-10 | 67 |
classical monocyte | 1.59e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.59e-08 | 42 |
myeloid lineage restricted progenitor cell | 2.41e-08 | 66 |
respiratory epithelial cell | 2.40e-07 | 13 |
kidney cell | 4.53e-07 | 17 |
kidney epithelial cell | 4.53e-07 | 17 |
kidney tubule cell | 5.50e-07 | 10 |
nephron tubule epithelial cell | 5.50e-07 | 10 |
smooth muscle cell | 7.67e-07 | 43 |
smooth muscle myoblast | 7.67e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
developing anatomical structure | 1.13e-14 | 581 |
embryo | 8.21e-14 | 592 |
embryonic structure | 3.20e-11 | 564 |
musculoskeletal system | 7.00e-11 | 167 |
germ layer | 8.45e-11 | 560 |
germ layer / neural crest | 8.45e-11 | 560 |
embryonic tissue | 8.45e-11 | 560 |
presumptive structure | 8.45e-11 | 560 |
germ layer / neural crest derived structure | 8.45e-11 | 560 |
epiblast (generic) | 8.45e-11 | 560 |
skeletal element | 1.72e-09 | 90 |
bone marrow | 2.51e-09 | 76 |
urinary system structure | 5.86e-09 | 47 |
bone element | 6.28e-09 | 82 |
renal system | 1.42e-08 | 48 |
skeletal system | 1.85e-08 | 100 |
nephron tubule epithelium | 5.50e-07 | 10 |