FFCP PHASE1:Hg19::chr20:61298021..61298038,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=37bp_to_ENST00000411824_5end | |||
|coexpression_cluster_id=C1872 | |||
|description=CAGE_peak_1_at_ENST00000411824_5end | |||
|id=chr20:61298021..61298038,- | |||
|ontology_enrichment_celltype=CL:0000148!1.16e-17!10;CL:0000541!1.16e-17!10;CL:0000147!2.77e-12!14;CL:0002567!4.78e-12!3;CL:0000710!2.96e-08!20 | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.30e-44;10!CL:0000147;1.06e-31;14!CL:0002567;1.63e-28;3!CL:0000710;5.33e-22;20!CL:0000075;4.06e-16;27!CL:0002077;2.74e-11;34!CL:0002566;9.83e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.35e-44,10;CL:0000541,1.35e-44,10;CL:0000147,1.09e-31,14;CL:0002567,1.71e-28,3;CL:0000710,5.42e-22,20;CL:0000075,4.11e-16,27;CL:0002077,1.20e-12,34;CL:0002566,9.84e-11,1;CL:0000333,7.64e-10,41 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.70e-13;3!UBERON:0008801;1.37e-10;1!UBERON:0006298;1.65e-10;1!UBERON:0006242;3.61e-10;1!UBERON:0005425;3.61e-10;1 | |||
|ontology_enrichment_disease=DOID:3493!1.71e-08!2;DOID:1909!6.77e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:3493;3.13e-19;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.38e-19,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.15e-16!115;UBERON:0002298!1.52e-14!8;UBERON:0006331!7.83e-11!3;UBERON:0001049!1.05e-10!57;UBERON:0005068!1.05e-10!57;UBERON:0006241!1.05e-10!57;UBERON:0007135!1.05e-10!57;UBERON:0000988!1.39e-10!3;UBERON:0003076!4.74e-10!15;UBERON:0003057!4.74e-10!15;UBERON:0005743!4.85e-10!86;UBERON:0000073!7.86e-10!94;UBERON:0001016!7.86e-10!94;UBERON:0000153!1.22e-09!129;UBERON:0007811!1.22e-09!129;UBERON:0001017!1.99e-09!82;UBERON:0004121!3.76e-09!169;UBERON:0000924!8.58e-09!173;UBERON:0006601!8.58e-09!173;UBERON:0004732!1.05e-08!13;UBERON:0001829!1.65e-08!2;UBERON:0000033!2.07e-08!123;UBERON:0000955!6.01e-08!69;UBERON:0006238!6.01e-08!69;UBERON:0003127!6.77e-08!2;UBERON:0005162!6.77e-08!2;UBERON:0000122!6.77e-08!2;UBERON:0000341!1.30e-07!2;UBERON:0002148!1.43e-07!2;UBERON:0009662!1.43e-07!2;UBERON:0002616!1.66e-07!59;UBERON:0003075!5.45e-07!86;UBERON:0007284!5.45e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;2.38e-19;2!UBERON:0001044;2.56e-14;6!UBERON:0003293;2.56e-14;6!UBERON:0003294;2.56e-14;6!UBERON:0010047;2.56e-14;6!UBERON:0003408;2.56e-14;6!UBERON:0000167;2.56e-14;6!UBERON:0001041;9.20e-11;14!UBERON:0001831;1.37e-10;1!UBERON:0001567;1.37e-10;1!UBERON:0001736;1.65e-10;1!UBERON:0002038;3.61e-10;1!UBERON:0000941;3.61e-10;1!UBERON:0001785;3.61e-10;1!UBERON:0002464;3.61e-10;1!UBERON:0004904;3.61e-10;1!UBERON:0001021;3.61e-10;1!UBERON:0009661;3.61e-10;1!UBERON:0002950;3.61e-10;1!UBERON:0001891;3.61e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,2.17e-19,2;UBERON:0001044,2.39e-14,6;UBERON:0003293,2.39e-14,6;UBERON:0003294,2.39e-14,6;UBERON:0010047,2.39e-14,6;UBERON:0000167,2.39e-14,6;UBERON:0001831,1.30e-10,1;UBERON:0001567,1.30e-10,1;UBERON:0008801,1.30e-10,1;UBERON:0001736,1.57e-10,1;UBERON:0006298,1.57e-10,1;UBERON:0000941,3.29e-10,1;UBERON:0001785,3.29e-10,1;UBERON:0002464,3.29e-10,1;UBERON:0004904,3.29e-10,1;UBERON:0001021,3.29e-10,1;UBERON:0003902,3.29e-10,1;UBERON:0005425,3.29e-10,1;UBERON:0002038,3.61e-10,1;UBERON:0009661,3.61e-10,1;UBERON:0002950,3.61e-10,1;UBERON:0001891,3.61e-10,1;UBERON:0009616,3.61e-10,1;UBERON:0010286,3.61e-10,1;UBERON:0003408,8.05e-09,10;UBERON:0000966,5.75e-07,6;UBERON:0005388,5.75e-07,6;UBERON:0001802,5.75e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0.12624243342638,11.5566167611748,19.4814097034722,23.4434894420094,5.13217338068116,3.70178973731965,8.10926256178577,44.017270625109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61119057208048,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16373037092745,0,0,0,0,0,1.06726497369676,0,0.576361668616424,0,0,0,0,0,0,0.104602846312333,0,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,10.7572403599707,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0,0,0.443716206147409,0.0620964029413835,0,0,0.151649117541648,7.13663333862419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.0675375846183947,0,0,0.19024743058172,0,8.77212426971492,0,0,0,0,0,0,0,0,0,0,0.271878931907327,0,0,0,0,0,0,0,0,0,10.0067161847319,0,0,0,0,0,0,0,5.59295566466361,0,0,0,0,0,0,0,20.611549059201,1.70685094975177,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0.392616934229891,1.18818560130834,0,0,0,0,0,0,0,0,0,7.79839781787719,1.29005624836306,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0.23806443146374,0,0,0,0,0,0,0.342233301085281,0.202056159043763,0.502055437748735,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@ENST00000411824 | |||
}} |
Revision as of 12:40, 21 January 2014
Short description: | p1@ENST00000411824 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000411824_5end |
Coexpression cluster: | C1872_signet_Melanocyte_large_parotid_submaxillary_salivary_retina |
Association with transcript: | 37bp_to_ENST00000411824_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.35e-44 | 10 |
melanoblast | 1.35e-44 | 10 |
pigment cell | 1.09e-31 | 14 |
light melanocyte | 1.71e-28 | 3 |
neurecto-epithelial cell | 5.42e-22 | 20 |
columnar/cuboidal epithelial cell | 4.11e-16 | 27 |
ecto-epithelial cell | 1.20e-12 | 34 |
dark melanocyte | 9.84e-11 | 1 |
migratory neural crest cell | 7.64e-10 | 41 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 2.17e-19 | 2 |
saliva-secreting gland | 2.39e-14 | 6 |
gland of oral region | 2.39e-14 | 6 |
gland of foregut | 2.39e-14 | 6 |
oral gland | 2.39e-14 | 6 |
oral cavity | 2.39e-14 | 6 |
parotid gland | 1.30e-10 | 1 |
cheek | 1.30e-10 | 1 |
parotid gland primordium | 1.30e-10 | 1 |
submandibular gland | 1.57e-10 | 1 |
submandibular gland primordium | 1.57e-10 | 1 |
cranial nerve II | 3.29e-10 | 1 |
cranial nerve | 3.29e-10 | 1 |
nerve trunk | 3.29e-10 | 1 |
nerve connecting eye with brain | 3.29e-10 | 1 |
nerve | 3.29e-10 | 1 |
retinal neural layer | 3.29e-10 | 1 |
presumptive neural retina | 3.29e-10 | 1 |
substantia nigra | 3.61e-10 | 1 |
midbrain nucleus | 3.61e-10 | 1 |
regional part of midbrain | 3.61e-10 | 1 |
midbrain | 3.61e-10 | 1 |
presumptive midbrain | 3.61e-10 | 1 |
midbrain neural tube | 3.61e-10 | 1 |
gland of gut | 8.05e-09 | 10 |
retina | 5.75e-07 | 6 |
photoreceptor array | 5.75e-07 | 6 |
posterior segment of eyeball | 5.75e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.38e-19 | 2 |