FFCP PHASE1:Hg19::chr20:45318125..45318148,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=112858 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16197 | |||
|TSSclassifier=strong | |||
|UniProt=Q5JZ02 | |||
|association_with_transcript=-46bp_to_ENST00000372102,uc002xsj.2_5end | |||
|description=CAGE_peak_4_at_TP53RK_5end | |||
|id=chr20:45318125..45318148,- | |||
|ontology_enrichment_celltype=CL:0000548!4.11e-20!679;CL:0000004!4.11e-20!679;CL:0000255!4.11e-20!679;CL:0000144!4.15e-20!625;CL:0000012!7.91e-20!682;CL:0000220!9.66e-19!246;CL:0002321!1.92e-18!248;CL:0000055!3.61e-18!180;CL:0000222!5.64e-18!119;CL:0002371!2.10e-15!591;CL:0000183!1.82e-13!59;CL:0000393!9.73e-13!60;CL:0000211!9.73e-13!60;CL:0000680!1.44e-12!57;CL:0000056!1.44e-12!57;CL:0000355!1.44e-12!57;CL:0000003!8.82e-12!722;CL:0000187!1.09e-11!54;CL:0000359!2.69e-10!32;CL:0000192!4.65e-10!42;CL:0000514!4.65e-10!42;CL:0000213!6.49e-07!57;CL:0000215!6.49e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.42e-10;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.64e-17,121;CL:0002321,2.95e-15,250;CL:0000680,3.63e-12,58;CL:0000056,3.63e-12,58;CL:0000355,3.63e-12,58;CL:0000393,4.22e-12,61;CL:0000211,4.22e-12,61;CL:0000359,2.49e-11,32;CL:0000187,3.47e-11,55;CL:0000192,1.15e-09,43;CL:0000514,1.15e-09,43;CL:0000723,3.87e-09,433;CL:0000048,5.94e-09,427;CL:0000034,3.40e-08,441 | |||
|ontology_enrichment_development_v019=CL:0000355;4.48e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.60e-11!83;UBERON:0002329!1.60e-11!83;UBERON:0003077!1.60e-11!83;UBERON:0003059!1.60e-11!83;UBERON:0007282!1.60e-11!83;UBERON:0009618!1.60e-11!83;UBERON:0007285!1.60e-11!83;UBERON:0000490!1.05e-10!138;UBERON:0005256!1.27e-10!143;UBERON:0001134!1.50e-10!61;UBERON:0002036!1.50e-10!61;UBERON:0003082!1.50e-10!61;UBERON:0002049!2.25e-10!79;UBERON:0007798!2.25e-10!79;UBERON:0000486!2.80e-10!82;UBERON:0004290!3.12e-10!70;UBERON:0002100!4.34e-10!216;UBERON:0001637!1.06e-09!42;UBERON:0003509!1.06e-09!42;UBERON:0004572!1.06e-09!42;UBERON:0002385!2.24e-09!63;UBERON:0001015!2.24e-09!63;UBERON:0000383!2.24e-09!63;UBERON:0000055!3.27e-09!69;UBERON:0001981!6.65e-09!60;UBERON:0007500!6.65e-09!60;UBERON:0004537!6.65e-09!60;UBERON:0006965!6.65e-09!60;UBERON:0004573!3.01e-08!33;UBERON:0004571!3.01e-08!33;UBERON:0004872!3.70e-08!84;UBERON:0000468!7.74e-07!659;UBERON:0003104!8.42e-07!238;UBERON:0009142!8.42e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.03e-08;33!UBERON:0004571;7.03e-08;33!UBERON:0001637;6.52e-07;42!UBERON:0003509;6.52e-07;42!UBERON:0004572;6.52e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.45e-11,78;UBERON:0000490,1.06e-10,148;UBERON:0001134,1.13e-10,62;UBERON:0002036,1.13e-10,62;UBERON:0003082,1.13e-10,62;UBERON:0005256,1.41e-10,122;UBERON:0002329,3.44e-10,71;UBERON:0003059,3.44e-10,71;UBERON:0007282,3.44e-10,71;UBERON:0004290,3.44e-10,71;UBERON:0009618,3.44e-10,71;UBERON:0002385,8.60e-10,64;UBERON:0001015,8.60e-10,64;UBERON:0000383,8.60e-10,64;UBERON:0003077,8.65e-10,72;UBERON:0007285,8.65e-10,72;UBERON:0007524,9.40e-10,73;UBERON:0000486,1.03e-09,83;UBERON:0002049,1.15e-09,78;UBERON:0007798,1.15e-09,78;UBERON:0001637,1.20e-09,42;UBERON:0003509,1.20e-09,42;UBERON:0004572,1.20e-09,42;UBERON:0000055,1.73e-08,68;UBERON:0004573,1.94e-08,33;UBERON:0004571,1.94e-08,33;UBERON:0007500,2.41e-08,59;UBERON:0001981,2.41e-08,59;UBERON:0004537,2.41e-08,59;UBERON:0006965,2.41e-08,59;UBERON:0002100,5.18e-08,199;UBERON:0003104,5.30e-08,160;UBERON:0009142,5.30e-08,160;UBERON:0004872,8.00e-07,83 | |||
|phase1_expression=3.63356758541113,1.49870366723688,1.83240725324762,3.00219895059391,0,1.74467704820074,5.06599756336621,4.42203911398782,2.08948502559871,2.45733936501509,4.18680700783456,1.96597234917155,1.31883489114227,0.74259811776028,0.994192127183747,2.01697543935533,1.80808358407193,2.92124036154949,0.975865597581014,1.60057375499824,1.22400414746552,2.19418305034661,2.86235987131057,1.50561867580173,1.12988375635323,0.458480434487708,0.410502947249729,0.236132343941038,0.393364276848904,0.383829398097213,0,2.75826367343678,2.409647350226,3.69754010166788,0.232401601740905,0.995184627411951,1.17440175733939,0,0,0,2.68698569087909,1.6194683300949,1.28787783817093,1.59938062657521,0,0.485168122375632,0.464858073811369,0,1.85823822537062,1.1507695692886,0.768482119587302,0.709446689665756,0.689491361473237,1.29096936716765,1.35426486594342,0.564727018627814,0.272906150057846,2.02251136000576,0.306083892370903,0.641858054152187,0,0.659702600373432,0.398927315243264,0.426224750532694,0.290209238628584,0,1.86846674698672,0.251248665256743,0.521482918420201,0.868755378820466,0,1.47311054395026,0.949387162322653,0.422510572623884,0,0,0.336985893439485,0.300353785683013,0.32145117339416,0,0.39783335439818,0.182664153764634,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0.560508562981536,1.31692042387539,0,0,0.205601498999509,0,0,0,0,0.222820913770347,0,0,0,0,0,0,0,0,0,0,0,0.226618685395132,0,0,0.253019692019503,0,0,0,0.301150238155546,0,0,0,0.821127996921047,0,0.267440195783507,0,4.87613732627923,0.670700859703636,1.79007586580942,2.1686349143074,1.00267582127178,1.59331170856906,1.5905718941022,1.94653948121054,0.567208902984407,0.886917589850256,0.790513071238134,0.654895377488563,0.728590576585084,0.741568885568859,1.62273696827342,1.39303789839414,1.32957960518865,0,0,0,2.18638648103376,2.58070378531837,0.694281003215189,2.26123176769604,1.67799774483962,0.825354125820202,0.626984899610432,1.29208379584664,1.77883131343355,2.00832367658802,0.805658634218294,2.28081631715554,0.488124115096339,1.47065232138347,2.43042584364528,1.3394959242612,1.34717623575702,1.0135033243499,1.53316637465883,5.69559395740877,2.19842092716489,0,3.87780264148325,2.61656431285521,1.98788780678127,1.51956613997496,1.32409180813219,1.14734648299525,1.06400514659507,1.12135520028461,1.06748995729705,0.98667019366864,1.24484414159907,1.88594940897563,0.980771418680752,2.57307626996383,0,1.64025002283658,2.80944069147288,5.13424639390004,1.79338416662161,0.587172493218824,0.971237666208789,0.842704840213491,2.85815839756851,1.59684612505298,1.75653827998801,2.37600571456411,3.21447008062124,0,3.59309070908119,2.02003336744879,0.875829639103749,1.6623846929051,1.75591048352335,1.83892677479412,3.00476117813194,2.04177929688038,0.179389635688862,1.92201649936711,2.33125091275518,1.20036438433761,1.03052529238439,0.772921620136887,1.11670113798954,1.0126579934476,1.46155507741798,0.757301322732344,1.38074847963449,1.61646056818812,0,1.10827308050404,1.69560592310488,1.15956511897978,1.90922284413584,1.14721838155602,0.975789649036763,0.397589304964456,0.69716365721711,0.414644220061482,0.756962552626885,0.36497735907583,3.12899064659632,0,0,0.464367928031979,1.44375896333917,1.53798840051797,0.674338760312407,2.16909926895134,1.21323370005633,1.08939722046203,0.949082476444386,0.674156540800822,0.392442930250692,0,0,1.40241773803446,6.173610169971,1.47008711385542,0,0,0,0,0.737930631258681,1.54411029268673,3.29250856225877,1.1240175325762,1.20634766893957,1.29623823221941,0.977424915930974,1.03993478527958,1.44331342025273,0.579652024875384,1.29149563659404,1.44366447761074,0.925971025153221,1.33177906564219,0.790204397959275,0,0.738651018262192,1.17002132569619,0.743155811443641,5.62403003920662,1.51183915378974,1.84307626415102,1.61205340865127,1.74380363108377,1.15014803749563,1.47798971368783,1.40877494421162,0.829312462163088,0.432359860250884,0.6312121671319,1.33345578013555,1.52795370223311,0,3.4214489204541,0.514137463516618,0.901029173531752,0.285826432630578,1.45770409648969,2.61576041299968,2.4935017179123,2.71470603091333,3.57656445851882,3.381211010224,0.531876233169741,0,3.34369586540785,1.41849132023278,3.46348832720929,1.71573592389777,5.96883765930587,2.46972101034231,2.60588947434988,1.06617584622764,1.58390374586686,7.23454504943007,5.22920075160176,4.1988656296464,0,0,0,0.479249710983165,1.14861935834114,1.42636905040718,3.18518874668674,1.2328579353023,2.68591444859843,0.336255431980582,0,0,0.128343036279748,2.28685161800217,1.30139853857622,3.86644406388848,1.67516265334349,1.27587750330633,0,0,0,0.36807447515742,0,0,1.45579603071565,1.24900292158013,0.315404830067869,0.937131319941706,1.80567659836631,2.27407504055985,1.03473071292505,1.32845119707087,0.737476674166813,1.73767228936166,8.41944977089785,6.86286847621712,0.206768026122887,0,0,3.63753085735511,1.66435439510497,0.30239029332968,2.97729369382532,2.14846762603287,1.68396056659844,2.30650468660262,4.09365799253363,1.28683136914886,1.48418066444991,1.542096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| |||
|short_description=p4@TP53RK | |||
}} |
Revision as of 11:44, 21 January 2014
Short description: | p4@TP53RK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TP53RK_5end |
Coexpression cluster: | NA |
Association with transcript: | -46bp_to_ENST00000372102, uc002xsj.2_5end |
EntrezGene: | TP53RK |
HGNC: | 16197 |
UniProt: | Q5JZ02 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.64e-17 | 121 |
embryonic cell | 2.95e-15 | 250 |
muscle precursor cell | 3.63e-12 | 58 |
myoblast | 3.63e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.63e-12 | 58 |
electrically responsive cell | 4.22e-12 | 61 |
electrically active cell | 4.22e-12 | 61 |
vascular associated smooth muscle cell | 2.49e-11 | 32 |
muscle cell | 3.47e-11 | 55 |
smooth muscle cell | 1.15e-09 | 43 |
smooth muscle myoblast | 1.15e-09 | 43 |
somatic stem cell | 3.87e-09 | 433 |
multi fate stem cell | 5.94e-09 | 427 |
stem cell | 3.40e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.45e-11 | 78 |
unilaminar epithelium | 1.06e-10 | 148 |
skeletal muscle tissue | 1.13e-10 | 62 |
striated muscle tissue | 1.13e-10 | 62 |
myotome | 1.13e-10 | 62 |
trunk mesenchyme | 1.41e-10 | 122 |
somite | 3.44e-10 | 71 |
presomitic mesoderm | 3.44e-10 | 71 |
presumptive segmental plate | 3.44e-10 | 71 |
dermomyotome | 3.44e-10 | 71 |
trunk paraxial mesoderm | 3.44e-10 | 71 |
muscle tissue | 8.60e-10 | 64 |
musculature | 8.60e-10 | 64 |
musculature of body | 8.60e-10 | 64 |
paraxial mesoderm | 8.65e-10 | 72 |
presumptive paraxial mesoderm | 8.65e-10 | 72 |
dense mesenchyme tissue | 9.40e-10 | 73 |
multilaminar epithelium | 1.03e-09 | 83 |
vasculature | 1.15e-09 | 78 |
vascular system | 1.15e-09 | 78 |
artery | 1.20e-09 | 42 |
arterial blood vessel | 1.20e-09 | 42 |
arterial system | 1.20e-09 | 42 |
vessel | 1.73e-08 | 68 |
systemic artery | 1.94e-08 | 33 |
systemic arterial system | 1.94e-08 | 33 |
epithelial tube open at both ends | 2.41e-08 | 59 |
blood vessel | 2.41e-08 | 59 |
blood vasculature | 2.41e-08 | 59 |
vascular cord | 2.41e-08 | 59 |
trunk | 5.18e-08 | 199 |
mesenchyme | 5.30e-08 | 160 |
entire embryonic mesenchyme | 5.30e-08 | 160 |
splanchnic layer of lateral plate mesoderm | 8.00e-07 | 83 |