FFCP PHASE1:Hg19::chr20:35580173..35580200,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25939 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15925 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y3Z3 | |||
|association_with_transcript=0bp_to_uc002xgh.1_5end | |||
|coexpression_cluster_id=C936 | |||
|description=CAGE_peak_4_at_SAMHD1_5end | |||
|id=chr20:35580173..35580200,- | |||
|ontology_enrichment_celltype=CL:0002009!1.39e-31!65;CL:0002194!3.22e-31!63;CL:0000576!3.22e-31!63;CL:0000040!3.22e-31!63;CL:0000559!3.22e-31!63;CL:0000557!4.82e-31!71;CL:0000766!5.84e-31!76;CL:0002087!7.53e-29!119;CL:0000738!7.71e-29!140;CL:0000839!1.51e-27!70;CL:0002031!1.81e-26!124;CL:0002057!2.32e-25!42;CL:0000860!2.01e-23!45;CL:0000037!1.09e-20!172;CL:0000566!1.09e-20!172;CL:0002032!1.15e-18!165;CL:0000837!1.15e-18!165;CL:0000988!2.69e-18!182;CL:0000763!4.85e-17!112;CL:0000049!4.85e-17!112;CL:0000791!1.88e-07!18;CL:0000789!1.88e-07!18;CL:0002420!1.88e-07!18;CL:0002419!1.88e-07!18;CL:0000790!1.88e-07!18;CL:0002393!6.71e-07!9;CL:0002397!6.71e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.30e-21;39!CL:0000234;1.30e-21;39!CL:0000576;2.76e-21;48!CL:0000860;3.59e-21;33!CL:0002057;3.59e-21;33!CL:0000766;8.17e-17;69!CL:0002087;1.21e-09;104!CL:0000791;1.71e-08;18!CL:0000789;1.71e-08;18!CL:0002419;1.71e-08;18!CL:0000763;3.02e-08;100!CL:0000738;8.49e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,5.78e-40,61;CL:0002194,1.37e-39,59;CL:0000576,1.37e-39,59;CL:0000040,1.37e-39,59;CL:0000559,1.37e-39,59;CL:0000766,5.18e-39,72;CL:0000557,8.25e-39,67;CL:0000839,2.33e-35,66;CL:0000738,4.50e-35,136;CL:0002087,2.53e-34,115;CL:0000473,2.66e-34,48;CL:0000234,2.66e-34,48;CL:0002031,1.42e-31,120;CL:0000860,1.06e-29,42;CL:0002057,1.06e-29,42;CL:0000037,7.15e-28,168;CL:0002032,4.51e-25,161;CL:0000837,4.51e-25,161;CL:0000763,1.37e-24,108;CL:0000049,1.37e-24,108;CL:0000988,2.40e-24,177;CL:0000791,1.58e-08,18;CL:0000789,1.58e-08,18;CL:0002420,1.58e-08,18;CL:0002419,1.58e-08,18;CL:0000790,1.58e-08,18;CL:0002393,7.10e-08,9;CL:0002397,7.10e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.87e-21;42!CL:0000790;1.71e-08;18!CL:0000049;1.39e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.60e-31!102;UBERON:0003061!9.60e-31!102;UBERON:0002193!3.42e-28!112;UBERON:0002371!4.14e-25!80;UBERON:0007023!1.08e-24!115;UBERON:0001474!5.69e-21!86;UBERON:0002405!3.51e-20!115;UBERON:0004765!7.56e-17!101;UBERON:0001434!7.56e-17!101;UBERON:0002204!9.81e-08!167;UBERON:0003081!1.68e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.16e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.82e-39,98;UBERON:0003061,3.82e-39,98;UBERON:0002193,1.26e-35,108;UBERON:0002371,2.79e-32,76;UBERON:0002405,5.54e-30,93;UBERON:0007023,6.88e-28,114;UBERON:0001474,2.05e-27,82;UBERON:0004765,1.45e-24,90;UBERON:0001434,1.09e-20,100;UBERON:0003081,1.46e-12,203;UBERON:0002204,1.85e-08,167 | |||
|phase1_expression=31.7937163723474,20.9818513413163,23.5393854840272,25.0183245882826,11.6209884551095,4.36169262050184,5.06599756336621,30.3225539244879,22.9843352815858,0,0,0.218441372130172,0,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0.487932798790507,0.492484232307152,0.204000691244253,0.626909442956176,0.572471974262113,0.273748850145768,1.00434111675842,1.52826811495903,1.72411237844886,1.8890587515283,41.6966133459838,27.2518872649021,40.5618243088119,0,0,0.369754010166788,1.31694240986513,0.995184627411951,17.322425920756,38.2256831886995,28.0762226458198,48.8274459110667,27.5416033315107,27.2070679455943,29.6211902779315,28.7888512783538,24.1840603960838,34.2043526274821,28.1239134655878,20.1472265130695,23.5376841880279,115.364649321182,106.819014622635,91.7551051967711,40.679990326921,31.6287494956075,33.8566216485854,28.2363509313907,15.8285567033551,20.0003901156125,54.4829328420207,26.6371092473158,49.2289586865262,189.004795006988,113.295357529087,145.342639931649,55.139755339431,33.4757282567772,52.3170689156283,89.4445248314006,72.486125660408,71.8895075973936,91.4153248976387,45.2981492264705,70.5711123993172,94.0086024088141,80.3644253867865,112.167375346981,95.4793364745208,112.782846523971,149.956972388376,60.1376889294034,55.099919584148,78.9109144263219,1.75996244461323,1.09227722252426,0.889509253863555,4.26730222566507,0.400395987036012,1.14950487990897,1.32208974556972,0,1.70763890732835,1.17447437874188,0,1.32171328579026,1.12101712596307,34.7666991903102,13.1795545976268,15.3274197472174,17.6817289139578,23.0717363639136,60.9474638604814,44.9775415447997,52.6032166701361,17.4914417309723,35.9419207119301,28.7994062958707,35.204502289452,16.1395062854351,17.9481899632632,19.5681106478375,18.239101173866,26.9516869733599,30.2504588850603,35.8504709640216,27.179236189294,23.6816526237913,16.8617017184845,17.1813722741315,15.9402405972287,20.0696211024181,11.0684187155591,10.4549724889321,28.1575472675435,19.9659113400893,19.9889162483753,23.2041707003137,13.1380479507367,5.44338206706778,2.94184215361858,7.24122019413995,17.0664806419773,4.69490601792545,0.639312809217652,0,1.50401373190767,0.144846518960824,0,0.486634870302636,0.189069634328136,0.443458794925128,0.87834785693126,5.95954793514592,0,0,69.7776896357569,76.7912141489768,55.5764274968856,46.028690490931,46.3315877731904,36.4028351302974,0.198762407366705,1.72046919021225,1.04142150482278,0,0.419499436209906,0.275118041940067,0.417989933073621,1.29208379584664,1.06729878806013,0.66944122552934,0.805658634218294,0,0.488124115096339,0.367663080345869,0,1.16089646769304,0.673588117878509,1.0135033243499,0,0,0,1.31780417436063,7.75560528296651,0,0.496971951695318,0.633152558322899,1.05927344650575,0.573673241497627,0.709336764396714,0,0,0.49333509683432,4.35695449559673,0.404132016209064,0.490385709340376,3.63257826347835,2.30470369792,0.468642863667593,0,1.71141546463335,0,0.117434498643765,0.647491777472526,0.140450806702248,0.816616685019573,0.368502951935304,1.65321249881225,7.12801714369232,2.96720315134268,0,0,0.841680569770331,0.375355559615893,1.38532057742091,0,0,2.10333282469236,0.226864366320042,1.61450672119976,0,0.423863802319124,0,0.515262646192195,0.257640540045629,0.744467425326359,0.168776332241266,0.487185025805993,0.252433774244115,0.644349290496095,1.77810662500693,0.710019185033229,0.201504196455281,0.169560592310488,0.386521706326594,0.545492241181669,0,2.43947412259191,2.38553582978673,1.04574548582567,0.621966330092223,1.26160425437814,1.45990943630332,1.56449532329816,1.92972281457866,0,38.5425380266543,34.6502151201401,0.236613600079688,0.337169380156203,0.241011029883482,0.55146986366197,0.435758888184812,0.474541238222193,0.808987848960987,0.392442930250692,0,0,0,0.4115740113314,0,5.07020139287323,5.89696330006576,8.86184860022106,0,0.491953754172454,0.171567810298526,0,0,0.804231779293047,0.277765335475589,1.3032332212413,0,1.44331342025273,0,0,1.01056513432752,0.925971025153221,0.190254152234598,0,0.858486162094873,53.6753073270526,56.3950278985563,73.5724253329205,0,1.34385702559088,1.84307626415102,0.0895585227028483,0.290633938513962,0,0.492663237895943,0.176096868026452,2.90259361757081,5.33243827642757,3.7872730027914,0.63497894292169,1.90994212779139,3.51652341630141,1.71072446022705,1.23392991243988,0.901029173531752,1.71495859578347,0.336393253036082,0.87192013766656,0.22001485746285,0.129271715757778,17.8828222925941,0,0.797814349754612,0,0.257207374262142,0,0.266422179016099,1.14382394926518,0.542621605391443,0,0.65147236858747,0,0,0.301439377059586,0,0.499864955910285,79.0554574167738,69.3114786176335,61.1418424500792,0.718874566474748,1.14861935834114,0,1.44781306667579,0.410952645100767,0.716243852959582,2.57795831185113,13.3980916937311,8.62510299438069,12.3209314828558,0.254094624222463,0,0.773288812777695,1.84267891867784,2.55175500661265,4.49404214368309,0,10.7748033493369,1.2269149171914,2.00068208423871,0.271265023699736,1.03985430765404,0.356857977594324,0.31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| |||
|short_description=p4@SAMHD1 | |||
}} |
Revision as of 11:06, 21 January 2014
Short description: | p4@SAMHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SAMHD1_5end |
Coexpression cluster: | C936_CD4_CD14_granulocyte_CD14CD16_CD8_Dendritic_Hair |
Association with transcript: | 0bp_to_uc002xgh.1_5end |
EntrezGene: | SAMHD1 |
HGNC: | 15925 |
UniProt: | Q9Y3Z3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 5.78e-40 | 61 |
monopoietic cell | 1.37e-39 | 59 |
monocyte | 1.37e-39 | 59 |
monoblast | 1.37e-39 | 59 |
promonocyte | 1.37e-39 | 59 |
myeloid leukocyte | 5.18e-39 | 72 |
granulocyte monocyte progenitor cell | 8.25e-39 | 67 |
myeloid lineage restricted progenitor cell | 2.33e-35 | 66 |
leukocyte | 4.50e-35 | 136 |
nongranular leukocyte | 2.53e-34 | 115 |
defensive cell | 2.66e-34 | 48 |
phagocyte | 2.66e-34 | 48 |
hematopoietic lineage restricted progenitor cell | 1.42e-31 | 120 |
classical monocyte | 1.06e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.06e-29 | 42 |
hematopoietic stem cell | 7.15e-28 | 168 |
hematopoietic oligopotent progenitor cell | 4.51e-25 | 161 |
hematopoietic multipotent progenitor cell | 4.51e-25 | 161 |
myeloid cell | 1.37e-24 | 108 |
common myeloid progenitor | 1.37e-24 | 108 |
hematopoietic cell | 2.40e-24 | 177 |
mature alpha-beta T cell | 1.58e-08 | 18 |
alpha-beta T cell | 1.58e-08 | 18 |
immature T cell | 1.58e-08 | 18 |
mature T cell | 1.58e-08 | 18 |
immature alpha-beta T cell | 1.58e-08 | 18 |
intermediate monocyte | 7.10e-08 | 9 |
CD14-positive, CD16-positive monocyte | 7.10e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.82e-39 | 98 |
blood island | 3.82e-39 | 98 |
hemolymphoid system | 1.26e-35 | 108 |
bone marrow | 2.79e-32 | 76 |
immune system | 5.54e-30 | 93 |
adult organism | 6.88e-28 | 114 |
bone element | 2.05e-27 | 82 |
skeletal element | 1.45e-24 | 90 |
skeletal system | 1.09e-20 | 100 |
lateral plate mesoderm | 1.46e-12 | 203 |
musculoskeletal system | 1.85e-08 | 167 |