FFCP PHASE1:Hg19::chr2:182321599..182321638,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3676 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6140 | |||
|TSSclassifier=strong | |||
|UniProt=E7ESG7,P13612 | |||
|association_with_transcript=0bp_to_ENST00000425522,NM_000885,uc002unt.2,uc002unu.2,uc010zfl.1_5end | |||
|description=CAGE_peak_9_at_ITGA4_5end | |||
|id=chr2:182321599..182321638,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.44e-77!172;CL:0000566!1.44e-77!172;CL:0000988!4.90e-73!182;CL:0002032!3.71e-71!165;CL:0000837!3.71e-71!165;CL:0000738!3.71e-60!140;CL:0002087!8.55e-58!119;CL:0002031!2.96e-53!124;CL:0000542!7.49e-36!53;CL:0000051!7.49e-36!53;CL:0000838!2.22e-35!52;CL:0000763!2.40e-33!112;CL:0000049!2.40e-33!112;CL:0002057!1.98e-25!42;CL:0000766!7.66e-23!76;CL:0000860!8.52e-23!45;CL:0000557!1.30e-20!71;CL:0000084!1.37e-20!25;CL:0000827!1.37e-20!25;CL:0000839!5.17e-20!70;CL:0002194!1.15e-19!63;CL:0000576!1.15e-19!63;CL:0000040!1.15e-19!63;CL:0000559!1.15e-19!63;CL:0000134!2.87e-19!358;CL:0000791!1.02e-18!18;CL:0000789!1.02e-18!18;CL:0002420!1.02e-18!18;CL:0002419!1.02e-18!18;CL:0000790!1.02e-18!18;CL:0002009!1.34e-18!65;CL:0002320!4.13e-18!365;CL:0000219!1.50e-14!390;CL:0000945!4.26e-13!24;CL:0000826!4.26e-13!24;CL:0000625!9.88e-13!11;CL:0000048!2.43e-11!430;CL:0000034!3.69e-11!444;CL:0000723!1.14e-10!436;CL:0000236!7.00e-10!14;CL:0000624!1.88e-07!6;CL:0002393!3.27e-07!9;CL:0002397!3.27e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000084;9.47e-28;25!CL:0000791;2.83e-24;18!CL:0000789;2.83e-24;18!CL:0002419;2.83e-24;18!CL:0000542;1.32e-23;53!CL:0000625;1.31e-17;11!CL:0002087;3.65e-17;104!CL:0000945;6.59e-13;24!CL:0000576;1.99e-12;48!CL:0000860;5.04e-12;33!CL:0002057;5.04e-12;33!CL:0000988;3.23e-11;177!CL:0000236;3.63e-11;13!CL:0000738;6.15e-11;136!CL:0000624;4.68e-10;6!CL:0000763;9.99e-10;100!CL:0000473;2.21e-08;39!CL:0000234;2.21e-08;39!CL:0000766;3.81e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.28e-67,168;CL:0000988,3.20e-62,177;CL:0002032,1.19e-60,161;CL:0000837,1.19e-60,161;CL:0002087,4.77e-54,115;CL:0000738,4.87e-53,136;CL:0002031,7.94e-46,120;CL:0000838,1.08e-42,52;CL:0000542,1.30e-41,53;CL:0000051,1.30e-41,53;CL:0000084,8.13e-28,25;CL:0000827,8.13e-28,25;CL:0000791,2.12e-24,18;CL:0000789,2.12e-24,18;CL:0002420,2.12e-24,18;CL:0002419,2.12e-24,18;CL:0000790,2.12e-24,18;CL:0000763,5.48e-22,108;CL:0000049,5.48e-22,108;CL:0000860,4.06e-19,42;CL:0002057,4.06e-19,42;CL:0000134,1.44e-18,354;CL:0000625,1.03e-17,11;CL:0002320,1.10e-17,361;CL:0000473,1.07e-15,48;CL:0000234,1.07e-15,48;CL:0000219,1.30e-14,386;CL:0000766,6.17e-14,72;CL:0002194,5.81e-13,59;CL:0000576,5.81e-13,59;CL:0000040,5.81e-13,59;CL:0000559,5.81e-13,59;CL:0000945,7.77e-13,24;CL:0000826,7.77e-13,24;CL:0002009,2.80e-12,61;CL:0000236,3.61e-12,14;CL:0000557,2.23e-11,67;CL:0000048,6.11e-11,427;CL:0000034,7.32e-11,441;CL:0000839,9.19e-11,66;CL:0000723,1.91e-10,433;CL:0000624,4.37e-10,6;CL:0002393,4.55e-08,9;CL:0002397,4.55e-08,9 | |||
|ontology_enrichment_development_v019=CL:0000790;2.83e-24;18!CL:0000051;1.32e-23;53!CL:0002057;1.32e-14;42!CL:0000049;5.51e-08;108 | |||
|ontology_enrichment_disease=DOID:2531!1.99e-19!51;DOID:0060083!1.99e-19!51;DOID:1240!2.17e-17!39;DOID:8692!3.49e-16!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.35e-11;31!DOID:1240;5.17e-11;39!DOID:2531;3.92e-09;51!DOID:0060083;3.92e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,1.02e-12,39;DOID:2531,1.30e-12,51;DOID:0060083,1.30e-12,51;DOID:8692,3.78e-12,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.91e-28!102;UBERON:0003061!1.91e-28!102;UBERON:0002193!1.49e-25!112;UBERON:0002371!1.42e-17!80;UBERON:0001474!3.75e-17!86;UBERON:0002384!5.42e-17!375;UBERON:0002405!1.06e-14!115;UBERON:0004765!8.31e-13!101;UBERON:0001434!8.31e-13!101;UBERON:0000178!5.44e-08!15;UBERON:0000179!5.44e-08!15;UBERON:0000463!5.44e-08!15;UBERON:0003081!6.24e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.33e-10;15!UBERON:0000179;5.33e-10;15!UBERON:0000463;5.33e-10;15!UBERON:0002390;3.98e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.27e-20,98;UBERON:0003061,5.27e-20,98;UBERON:0002193,6.58e-17,108;UBERON:0002384,1.72e-16,371;UBERON:0002405,1.98e-10,93;UBERON:0001474,2.64e-10,82;UBERON:0000178,4.38e-10,15;UBERON:0000179,4.38e-10,15;UBERON:0000463,4.38e-10,15;UBERON:0002371,5.17e-10,76;UBERON:0004765,1.20e-08,90;UBERON:0001434,5.42e-07,100 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0.286235987131057,0,0,2.29240217243854,2.62721886239826,2.12519109546934,2.36018566109342,4.60595277716655,1.08371286321253,0,0,0,0.309868802321207,0.426507697462265,4.11040615068786,1.10799081706375,1.40381113229099,1.73608696572681,0.223915474239924,0.971680998056939,0.257575567634187,0.726991193897824,0.377875943688809,0.727752183563449,1.16214518452842,1.23350366406548,0.309706370895104,4.02769349251011,2.81776777182011,2.60130452877444,0.344745680736619,1.29096936716765,2.70852973188684,1.69418105588344,2.18324920046277,0.449446968890169,1.53041946185451,1.28371610830437,0,4.61791820261403,3.59034583718937,2.98357325372886,1.16083695451434,0,1.24564449799115,2.76373531782418,1.0429658368404,1.73751075764093,1.21079900526674,0.736555271975129,0.316462387440884,1.26753171787165,0.212604299965044,1.25795187305026,1.12328631146495,0.750884464207532,0.32145117339416,1.71007646244749,1.19350006319454,1.46131323011707,3.51992488922645,2.18455444504853,3.55803701545422,2.56038133539904,2.00197993518006,1.14950487990897,1.98313461835459,1.90810750907073,2.27685187643779,2.34894875748376,1.14681968437569,5.28685314316103,0.560508562981536,2.63384084775077,4.91774425284583,5.10913991573914,8.22405995998037,6.68745981562712,2.60737813306872,0.946895611469467,1.94826728407911,11.2524561454025,3.53527088969805,3.32300841875432,3.5204502289452,7.81357050326618,11.9654599755088,10.6884637992389,14.64655094265,11.5921234294021,2.07601188426885,0.802622484269139,1.04535523804977,36.4856083486163,18.3945836928922,14.0887252647878,17.2053390573262,9.2383970153988,7.1619179924206,4.75226022224187,4.9689789295665,3.96758494578697,3.74792179657038,8.28720382154059,10.6746639599736,10.2819439044614,8.55808626507223,5.21367853978076,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0.715471872916026,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9195036841956,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528290604079356,0.621984346622316,0.432359860250884,0.6312121671319,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0.112085143993527,8.27529192848094,7.54696512008311,6.67383788654692,0,0,0,0,0,2.24702107184155,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89475236572042,1.50999940573032,3.20182673410333,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47237555009527,1.73269949833235,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,4.58782324285425,4.5571774973933,5.71756261098694,5.34770955012053,1.29694662238543,1.62009431171434,0,0,0,0,0.371606350251437,0,4.19736875755643,14.9860696365093,11.1764448002377,4.40462351304443,2.96343015813436,0.649243880549111,0.842391534340376,1.14117339516596,3.13359791546046,7.51903431270201,1.69291777801603,4.49646610290359,7.06298975168666,0.425846237690326,13.7402137902306,0.614481528616916,1.3420566473545,1.16794399198336,7.81552381608161,0.278406173895242,0,29.7501246323581,5.99529542396076,9.86909035614947,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,1.15362711958732,0,0.597743964753209,1.38141957765574,0,0,1.23084805461069,0,0,0,0.511572370226872,0.0986434056369336,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,5.10966490978682,1.09886179476517,0.997270091400938,0,0,0,0,6.35746315921515,0,0,0,0,0,0.0884575645033392,0,0,0.123563938946503,0,0,0,0,0.182454789215666,0,0,0,2.41981432097328,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.592713324460491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39460383124975,0.082092520749339,0,0,0.293104467356165,2.65013777824443,0,0.13223260174269,0,0,1.17466153824464,0.157204305099666,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,2.79982354196902,1.38699248602383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18944576355981,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0.218559560503957,0,0,0,0,0,0,0,1.03382309777839,0.709036767709349,1.39917618294901,0,0,0,0,0,0.143339583151451,0,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| |||
|short_description=p9@ITGA4 | |||
}} |
Revision as of 07:20, 21 January 2014
Short description: | p9@ITGA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_ITGA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000425522, NM_000885, uc002unt.2, uc002unu.2, uc010zfl.1_5end |
EntrezGene: | ITGA4 |
HGNC: | 6140 |
UniProt: | E7ESG7P13612 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.27e-20 | 98 |
blood island | 5.27e-20 | 98 |
hemolymphoid system | 6.58e-17 | 108 |
connective tissue | 1.72e-16 | 371 |
immune system | 1.98e-10 | 93 |
bone element | 2.64e-10 | 82 |
blood | 4.38e-10 | 15 |
haemolymphatic fluid | 4.38e-10 | 15 |
organism substance | 4.38e-10 | 15 |
bone marrow | 5.17e-10 | 76 |
skeletal element | 1.20e-08 | 90 |
skeletal system | 5.42e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
leukemia | 1.02e-12 | 39 |
hematologic cancer | 1.30e-12 | 51 |
immune system cancer | 1.30e-12 | 51 |
myeloid leukemia | 3.78e-12 | 31 |