FFCP PHASE1:Hg19::chr2:99279946..99279957,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11320 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7047 | |||
|TSSclassifier=strong | |||
|UniProt=E9PEN2,B4E2R6,Q9UM21 | |||
|association_with_transcript=-10bp_to_ENST00000414521,ENST00000461884,ENST00000492163,NM_001160154,uc010fim.1,uc010yvm.1_5end | |||
|coexpression_cluster_id=C98 | |||
|description=CAGE_peak_4_at_MGAT4A_5end | |||
|id=chr2:99279946..99279957,- | |||
|ontology_enrichment_celltype=CL:0000791!1.06e-39!18;CL:0000789!1.06e-39!18;CL:0002420!1.06e-39!18;CL:0002419!1.06e-39!18;CL:0000790!1.06e-39!18;CL:0000084!6.44e-33!25;CL:0000827!6.44e-33!25;CL:0000625!1.41e-25!11;CL:0000738!3.00e-21!140;CL:0000838!1.11e-19!52;CL:0000542!3.56e-19!53;CL:0000051!3.56e-19!53;CL:0002087!8.76e-17!119;CL:0002031!2.31e-15!124;CL:0000037!5.64e-15!172;CL:0000566!5.64e-15!172;CL:0000624!6.89e-14!6;CL:0000988!1.73e-13!182;CL:0002032!3.01e-13!165;CL:0000837!3.01e-13!165;CL:0000623!1.69e-08!3;CL:0000825!1.69e-08!3;CL:0000898!7.15e-08!3;CL:0000767!7.32e-08!3;CL:0000842!1.31e-07!3;CL:0000094!4.15e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.74e-64;18!CL:0000789;1.74e-64;18!CL:0002419;1.74e-64;18!CL:0000625;7.92e-46;11!CL:0000084;2.97e-45;25!CL:0000624;3.58e-24;6!CL:0000623;2.79e-14;3!CL:0000542;3.22e-14;53!CL:0000767;3.75e-13;3!CL:0000898;4.52e-13;3!CL:0000226;7.41e-13;3!CL:0000842;7.41e-13;3!CL:0000815;5.91e-09;2!CL:0000792;5.91e-09;2!CL:0002677;5.91e-09;2!CL:0000094;1.47e-08;8!CL:0002087;1.51e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.93e-64,18;CL:0000789,1.93e-64,18;CL:0002420,1.93e-64,18;CL:0002419,1.93e-64,18;CL:0000790,1.93e-64,18;CL:0000625,9.24e-46,11;CL:0000084,3.20e-45,25;CL:0000827,3.20e-45,25;CL:0000838,3.77e-28,52;CL:0000542,1.59e-27,53;CL:0000051,1.59e-27,53;CL:0000624,3.44e-24,6;CL:0000738,3.60e-22,136;CL:0002087,6.65e-20,115;CL:0000037,1.38e-16,168;CL:0000988,2.21e-15,177;CL:0002031,2.69e-14,120;CL:0000623,2.74e-14,3;CL:0000825,2.74e-14,3;CL:0002032,1.01e-13,161;CL:0000837,1.01e-13,161;CL:0000898,3.83e-13,3;CL:0000767,3.99e-13,3;CL:0000226,1.16e-12,3;CL:0000842,1.16e-12,3;CL:0000815,5.34e-09,2;CL:0000792,5.34e-09,2;CL:0002677,5.34e-09,2;CL:0000094,1.44e-08,8 | |||
|ontology_enrichment_development_v019=CL:0000790;1.74e-64;18!CL:0000051;3.22e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.00e-13!15;UBERON:0000179!2.00e-13!15;UBERON:0000463!2.00e-13!15;UBERON:0004177!7.86e-11!7;UBERON:0002193!1.10e-10!112;UBERON:0002390!1.42e-10!102;UBERON:0003061!1.42e-10!102;UBERON:0002370!1.43e-09!4;UBERON:0005058!1.43e-09!4;UBERON:0009113!1.43e-09!4;UBERON:0003295!1.43e-09!4;UBERON:0005562!1.43e-09!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.46e-16;15!UBERON:0000179;2.46e-16;15!UBERON:0000463;2.46e-16;15!UBERON:0002390;1.13e-09;32!UBERON:0002370;9.82e-09;2!UBERON:0005058;9.82e-09;2!UBERON:0009113;9.82e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.38e-16,15;UBERON:0000179,3.38e-16,15;UBERON:0000463,3.38e-16,15;UBERON:0002370,8.44e-10,4;UBERON:0005058,8.44e-10,4;UBERON:0009113,8.44e-10,4;UBERON:0003295,8.44e-10,4;UBERON:0005562,8.44e-10,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,12.2825407391108,2.63187409637329,0,0,0,0,0,0,2.76997704265939,1.60435557976113,1.95309783644267,0,1.29557466407592,0.77272670290256,0,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0.434377689410233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,2.80254281490768,0,3.73748563216283,2.75107533924415,1.43921049299656,0.83593247695339,2.93330039970231,4.73447805734733,1.94826728407911,0.445641827540694,1.47302953737419,3.54454231333794,0.812411591295047,1.79327847615945,0.390178042679635,0.328875809207352,0.276350017785848,0,2.81744470007915,3.21048993707656,3.1360657141493,1.81294948316106,6.89796888483458,3.77990190030893,1.26509846009751,4.45991580053735,3.90650072313851,6.65316431113862,5.72185452495537,5.63141089079441,2.49861453104692,6.62976305723247,13.1380479507367,14.314078768956,5.88368430723716,2.60683926989038,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.176096868026452,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.896681151948218,18.7179222191831,11.8595166172735,6.67383788654692,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51505644408909,2.37285620900479,1.28073069364133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,0,5.47933083552915,2.87953591160336,0.648473311192717,0.540031437238115,1.58625035258854,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,7.18449277040819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385870790539723,0,0,0.245148321753905,0,0,0.297046400327086,0,0,0.563903507879121,0.128915775947154,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55013383606415,1.61394257169231,0,0,0,0,0,0.471464371102113,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p4@MGAT4A | |||
}} |
Revision as of 04:34, 21 January 2014
Short description: | p4@MGAT4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MGAT4A_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | -10bp_to_ENST00000414521, ENST00000461884, ENST00000492163, NM_001160154, uc010fim.1, uc010yvm.1_5end |
EntrezGene: | MGAT4A |
HGNC: | 7047 |
UniProt: | E9PEN2B4E2R6Q9UM21 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.93e-64 | 18 |
alpha-beta T cell | 1.93e-64 | 18 |
immature T cell | 1.93e-64 | 18 |
mature T cell | 1.93e-64 | 18 |
immature alpha-beta T cell | 1.93e-64 | 18 |
CD8-positive, alpha-beta T cell | 9.24e-46 | 11 |
T cell | 3.20e-45 | 25 |
pro-T cell | 3.20e-45 | 25 |
lymphoid lineage restricted progenitor cell | 3.77e-28 | 52 |
lymphocyte | 1.59e-27 | 53 |
common lymphoid progenitor | 1.59e-27 | 53 |
CD4-positive, alpha-beta T cell | 3.44e-24 | 6 |
leukocyte | 3.60e-22 | 136 |
nongranular leukocyte | 6.65e-20 | 115 |
hematopoietic stem cell | 1.38e-16 | 168 |
hematopoietic cell | 2.21e-15 | 177 |
hematopoietic lineage restricted progenitor cell | 2.69e-14 | 120 |
natural killer cell | 2.74e-14 | 3 |
pro-NK cell | 2.74e-14 | 3 |
hematopoietic oligopotent progenitor cell | 1.01e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.01e-13 | 161 |
naive T cell | 3.83e-13 | 3 |
basophil | 3.99e-13 | 3 |
single nucleate cell | 1.16e-12 | 3 |
mononuclear cell | 1.16e-12 | 3 |
regulatory T cell | 5.34e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.34e-09 | 2 |
naive regulatory T cell | 5.34e-09 | 2 |
granulocyte | 1.44e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 3.38e-16 | 15 |
haemolymphatic fluid | 3.38e-16 | 15 |
organism substance | 3.38e-16 | 15 |
thymus | 8.44e-10 | 4 |
hemolymphoid system gland | 8.44e-10 | 4 |
thymic region | 8.44e-10 | 4 |
pharyngeal gland | 8.44e-10 | 4 |
thymus primordium | 8.44e-10 | 4 |