FFCP PHASE1:Hg19::chr2:55214774..55214796,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-5bp_to_ENST00000486085_5end | |||
|description=CAGE_peak_14_at_RTN4_5end | |||
|id=chr2:55214774..55214796,- | |||
|ontology_enrichment_celltype=CL:0000055!4.98e-14!180;CL:0000057!2.89e-11!75;CL:0000222!2.12e-08!119;CL:0000680!1.93e-07!57;CL:0000056!1.93e-07!57;CL:0000355!1.93e-07!57;CL:0000192!6.91e-07!42;CL:0000514!6.91e-07!42;CL:0000393!8.60e-07!60;CL:0000211!8.60e-07!60 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.59e-09,76;CL:0000222,8.25e-08,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.18e-09!83;UBERON:0002329!2.18e-09!83;UBERON:0003077!2.18e-09!83;UBERON:0003059!2.18e-09!83;UBERON:0007282!2.18e-09!83;UBERON:0009618!2.18e-09!83;UBERON:0007285!2.18e-09!83;UBERON:0000468!2.74e-09!659;UBERON:0004290!1.14e-08!70;UBERON:0000467!1.24e-08!625;UBERON:0000480!1.27e-08!626;UBERON:0000486!2.25e-08!82;UBERON:0001134!4.90e-07!61;UBERON:0002036!4.90e-07!61;UBERON:0003082!4.90e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,4.12e-08,73;UBERON:0000926,4.75e-08,315;UBERON:0004120,4.75e-08,315;UBERON:0006603,4.75e-08,315;UBERON:0002329,7.76e-08,71;UBERON:0003059,7.76e-08,71;UBERON:0007282,7.76e-08,71;UBERON:0004290,7.76e-08,71;UBERON:0009618,7.76e-08,71;UBERON:0007503,1.12e-07,78;UBERON:0003077,1.39e-07,72;UBERON:0007285,1.39e-07,72;UBERON:0000486,2.15e-07,83 | |||
|phase1_expression=0.54503513781167,4.71021152560163,1.12763523276777,6.00439790118782,4.02264984984559,6.97870819280295,2.53299878168311,1.26343974685366,1.30592814099919,0.491467873003018,0.697801167972428,0.436882744260345,1.05506791291381,0.618831764800233,1.98838425436749,0.672325146451775,2.41077811209591,2.19093027116212,2.92759679274304,0.61560529038394,0.816002764977012,1.25381888591235,0.572471974262113,2.46373965131192,1.25542639594803,0.152826811495903,0.164201178899891,0.236132343941038,0.393364276848904,0.383829398097213,0.154816123316076,0,0.6024118375565,1.10926203050036,0,0,0,0,0.601633342410425,0.217010870715852,0.223915474239924,0,0.515151135268373,0.726991193897824,0,0.242584061187816,0.464858073811369,0.822335776043652,0.619412741790207,1.43846196161075,1.7931249457037,0.236482229888585,1.03423704220986,0.645484683583826,2.70852973188684,1.12945403725563,1.91034305040492,0.449446968890169,1.83650335422542,0.320929027076094,1.27867425159808,1.64925650093358,0.199463657621632,2.55734850319616,1.45104619314292,1.70215567407342,0,0.251248665256743,1.5644487552606,1.73751075764093,1.81619850790011,1.84138817993782,0,0,0.637812899895131,0,0.22465726229299,0.150176892841506,0.48217676009124,0.570025487482497,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786021525498329,0.411202997999018,0,0,0,1.94826728407911,0,0.294605907474837,0,0.270803863765016,0.512365278902701,0.260118695119756,0.164437904603676,0,0,0.14828656316206,0,1.04535523804977,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0.144824403882799,0,1.34140171940727,0.639312809217652,0.722878304769133,0,2.31754430337318,0,0.486634870302636,0.378139268656271,1.55210578223795,0.87834785693126,0.196468613246569,1.09288586487763,0.741568885568859,0.324547393654683,0.348259474598534,1.19662164466979,0,0,0,0.198762407366705,0,1.04142150482278,1.13061588384802,0.419499436209906,1.6507082516404,1.04497483268405,0.775250277507987,1.06729878806013,0.33472061276467,1.61131726843659,2.28081631715554,0.732186172644509,0.367663080345869,2.43042584364528,0.446498641420399,0.898117490504679,0.337834441449967,0,0,0.549605231791222,0,0,0.436094052142534,2.98183171017191,0.633152558322899,0.264818361626438,2.86836620748814,1.77334191099179,1.68203280042692,0,1.48000529050296,0.311211035399766,1.61652806483626,1.79808093424805,0.756787138224657,0.576175924479999,1.87457145467037,1.87296046098192,0.570471821544449,3.13842229158782,1.64408298101271,1.61872944368132,0.98315564691574,0.408308342509787,1.59684612505298,0.516628905878827,1.18800285728205,2.71993622206413,1.82032272387605,2.15585442544872,0,1.37630371859161,0.831192346452549,0.877955241761676,2.14541457059314,0.901428353439581,1.24775401476023,1.97328599257748,0.85422955527427,1.05965950579781,1.80054657650641,0.721367704669072,1.28820270022815,0.558350568994769,0.337552664482532,0.584622030967192,1.00973509697646,0.552299391853796,0.323292113637624,1.77504796258307,0.906768884048762,0.67824236924195,0.773043412653187,0.272746120590835,0.286804595389004,0.243947412259191,0,0.348581828608555,0.414644220061482,0.504641701751257,0.36497735907583,0,3.85944562915731,1.38134921352481,2.78620756819187,1.44375896333917,1.0647612003586,0.505754070234305,0.964044119533928,0.992645754591546,0.217879444092406,1.18635309555548,0.674156540800822,0.98110732562673,1.53898862778556,0,0,0.8231480226628,1.47008711385542,0,0,0.590789906681404,0,0.122988438543114,1.20097467208968,1.20725313949488,0,1.00528972411631,0.555530670951178,2.93227474779292,1.03993478527958,2.88662684050547,0.115930404975077,0.352226082707465,0.577465791044295,1.85194205030644,1.52203321787679,0,0,0.738651018262192,1.17002132569619,1.0404181360211,0,0.671928512795438,0.567100388969546,0.179117045405697,0.290633938513962,1.15014803749563,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0.380987365753014,0.381988425558278,0,0,0.719792448923265,0.600686115687835,0.857479297891735,0.448524337381443,1.30788020649984,0.7333828582095,0.517086863031111,0,0.845302752556,1.59562869950922,2.08014873822732,0.257207374262142,2.83698264046557,1.0656887160644,1.85871391755592,0.542621605391443,0.823240336780769,0,2.13235169245527,1.58390374586686,1.20575750823834,0.871533458600294,1.89948683245908,1.2162378064119,0.502257091432126,4.21667878966063,1.4377491329495,3.44585807502342,0,2.31650090668127,3.28762116080613,1.61154866915906,0,0.394061520403854,0.215627574859517,0.256686072559497,0.76228387266739,0,1.54657762555539,0.502548796003046,1.91381625495949,0.749007023947182,0,0.414415513436035,0.613457458595699,2.00068208423871,1.35632511849868,1.24782516918484,9.09987842865525,1.73472656537328,1.52283839490527,0.902838299183157,0,5.17365356462525,0,1.10621501125022,0.434418072340414,0.391602314925481,0.686286847621712,0,0.431428401637234,0.320182673410333,0,1.66435439510497,0.30239029332968,1.48864684691266,0.306923946576125,3.08726103876381,2.05022638809122,0,2.0911009748669,2.96836132889982,2.00472601943452,0.887808626565635,0.492762936082855,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| |||
|short_description=p14@RTN4 | |||
}} |
Revision as of 03:12, 21 January 2014
Short description: | p14@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_14_at_RTN4_5end |
Coexpression cluster: | NA |
Association with transcript: | -5bp_to_ENST00000486085_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.59e-09 | 76 |
mesodermal cell | 8.25e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 4.12e-08 | 73 |
mesoderm | 4.75e-08 | 315 |
mesoderm-derived structure | 4.75e-08 | 315 |
presumptive mesoderm | 4.75e-08 | 315 |
somite | 7.76e-08 | 71 |
presomitic mesoderm | 7.76e-08 | 71 |
presumptive segmental plate | 7.76e-08 | 71 |
dermomyotome | 7.76e-08 | 71 |
trunk paraxial mesoderm | 7.76e-08 | 71 |
epithelial vesicle | 1.12e-07 | 78 |
paraxial mesoderm | 1.39e-07 | 72 |
presumptive paraxial mesoderm | 1.39e-07 | 72 |
multilaminar epithelium | 2.15e-07 | 83 |