FFCP PHASE1:Hg19::chr19:55897297..55897303,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6158 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10330 | |||
|TSSclassifier=strong | |||
|UniProt=C9JB50,G5E9L2,P46779,B4DEP9,E9PB24 | |||
|association_with_transcript=0bp_to_ENST00000428193,ENST00000431533,ENST00000558815,ENST00000560055,ENST00000560583,NM_000991,NM_001136134,NM_001136135,NM_001136136,NM_001136137,uc002qkv.2,uc010yfy.1,uc010yfz.1,uc010yga.1,uc010ygb.1_5end | |||
|coexpression_cluster_id=C884 | |||
|description=CAGE_peak_1_at_RPL28_5end | |||
|id=chr19:55897297..55897303,+ | |||
|ontology_enrichment_celltype=CL:0000003!2.65e-34!722;CL:0000144!3.38e-31!625;CL:0000012!1.64e-30!682;CL:0002371!5.90e-30!591;CL:0000548!1.24e-28!679;CL:0000004!1.24e-28!679;CL:0000255!1.24e-28!679;CL:0000063!3.22e-15!578;CL:0000034!7.41e-14!444;CL:0000048!5.87e-13!430;CL:0000723!5.98e-13!436;CL:0000542!6.58e-11!53;CL:0000051!6.58e-11!53;CL:0000838!7.41e-11!52;CL:0000183!3.33e-09!59;CL:0002320!5.22e-09!365;CL:0000192!4.17e-08!42;CL:0000514!4.17e-08!42;CL:0000222!4.57e-08!119;CL:0000791!1.34e-07!18;CL:0000789!1.34e-07!18;CL:0002420!1.34e-07!18;CL:0002419!1.34e-07!18;CL:0000790!1.34e-07!18;CL:0000134!1.50e-07!358;CL:0000187!1.97e-07!54;CL:0000084!3.78e-07!25;CL:0000827!3.78e-07!25;CL:0002087!5.70e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.34e-07;18!CL:0000789;1.34e-07;18!CL:0002419;1.34e-07;18!CL:0000542;1.99e-07;53!CL:0000084;3.77e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,1.48e-14,441;CL:0000048,1.23e-13,427;CL:0000723,1.26e-13,433;CL:0000542,6.58e-11,53;CL:0000051,6.58e-11,53;CL:0000838,7.41e-11,52;CL:0002320,1.66e-09,361;CL:0000222,3.23e-08,121;CL:0000192,3.81e-08,43;CL:0000514,3.81e-08,43;CL:0000134,5.33e-08,354;CL:0002087,8.44e-08,115;CL:0000791,1.34e-07,18;CL:0000789,1.34e-07,18;CL:0002420,1.34e-07,18;CL:0002419,1.34e-07,18;CL:0000790,1.34e-07,18;CL:0000187,1.73e-07,55;CL:0000084,3.78e-07,25;CL:0000827,3.78e-07,25;CL:0000988,4.82e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;1.34e-07;18!CL:0000051;1.99e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!4.30e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.38e-09,371;UBERON:0007503,1.49e-07,78 | |||
|phase1_expression=1792.62056826258,1466.16038760545,1731.62485431901,1954.43151683664,2090.88399973085,2593.4624321504,6443.94890060182,5080.29122209857,5647.35565293691,2940.20655024055,9131.42608408719,3743.64823556689,4197.58769152761,3165.32447695319,2951.42502823282,4383.55995486557,4857.71789587325,5252.39017006599,3873.21055679904,4344.81901847177,4595.1155702768,5787.62797737141,1791.55104345328,1268.0046738752,1548.94508732068,1415.32910126355,1311.63901705233,1247.64459460313,1661.57070540977,1155.71031767071,3200.82334955987,2893.41859343518,3226.51780195262,3524.86497891999,4926.99142410776,3235.62956218123,4367.01293466652,1598.830749023,2414.55514754051,2133.43387000754,1418.28061383568,1610.07541378035,1269.58997286891,2102.89472746884,2919.09166499605,2335.35675705511,2473.7422397872,3092.39368581215,2517.6030890063,2762.42235107729,3032.17428318496,2802.55090640962,2420.80417013254,2578.71131091739,2399.75734245174,2423.05539459241,3051.63656994683,2358.02352228227,3016.45675931525,3399.28025478998,3108.45710563494,2405.27568096153,2759.57970319528,2389.41595148628,3148.48002988151,3435.51753550485,2807.68269847205,2568.26385625443,3213.8992262237,3031.08751670461,2500.90534537845,3689.77363495941,2853.8578099419,2807.79401037202,3600.45381990801,3997.98071119922,2354.85742335512,2991.22335161712,2391.27527887916,2266.42133823041,3665.63652742483,3496.37456720886,4503.74389576525,4051.25621834249,4386.17013080119,2568.48920962781,3461.02291193929,3899.69530509117,4726.47084041176,4662.46069841432,4755.77435690944,4580.45007709332,4317.77611167446,4191.15282924091,4072.65521862384,5064.87595022473,3444.78149423344,4538.48828822735,4455.59008481836,3307.45043831378,3792.75741681509,5741.50154014511,7572.91493321551,3058.66268332556,4832.71530621723,6452.17467974797,4103.76175149505,2229.5575111451,2288.65433901118,2889.6672976004,3687.89098735215,3423.73365487391,4687.33826155273,6913.25499783819,6331.71667686744,3099.69037883462,3343.21558618316,4541.03669205295,4619.63353689208,3651.3967789828,5637.08054348887,5005.08046606514,5369.50874631338,5252.31454855502,2950.86376116641,3313.69764235602,4350.3361276877,3292.23811685988,3609.64032249,3378.02922056629,714.354118299908,3924.94143098568,4438.49310927447,2911.0309333053,3463.24228667273,2802.9249884109,914.578839108764,2684.27794458934,2128.73501290048,2252.77067821965,2206.7611557541,934.208255987435,6758.40618840324,3971.47216666402,1024.92066916149,1159.70405041312,1093.71218322818,1934.63594436493,2835.95076764787,3154.41710129067,1762.22750371321,3028.02577477356,3995.93431400502,1796.5486394345,4121.58196076233,3006.21484427912,2134.88358317352,2084.13116270064,2301.45195332033,2374.84274756534,5315.33283925519,3440.23127837627,5578.52644937851,2889.46414843818,4483.32553957766,1687.2290661994,1646.4738894677,1900.20612167558,3034.13625544983,2573.4592030892,2171.49027080712,477.045111118549,717.393488674402,6614.23848884582,2059.9487397771,2532.6102332916,490.840833274602,1059.00080380462,2682.35697456617,3184.08809120816,3086.11346654577,3988.61425790548,2452.34295895016,2059.59146527346,2198.39913497291,5533.62755469869,2893.55549273855,4641.90756462751,3864.54175115937,2731.41908155482,3162.78242651777,1902.79118152492,1893.91344910714,1864.06310655224,2617.05232131648,2024.30954929794,3308.80149059154,3066.23537464498,2933.32758203152,6985.48845287435,8305.06986497027,2125.9167831259,1772.1787154665,2434.28531864403,2724.73409280736,2365.47280797683,2827.93098279887,2090.66856782235,700.875306636384,4290.79505614266,3633.78437728185,911.37665880833,2860.73821165906,764.419482315382,3416.54713167899,477.468243910542,2573.01899529177,696.464783139512,3669.38510957798,3851.54059582183,1021.3625976703,2193.17167421927,2387.58270032398,2199.88829155781,1734.39258083712,1431.15493099113,2542.41993056529,2118.09075731398,2571.25576175957,2247.99363906332,1942.36591004059,2371.25790191567,3274.48871166305,4219.66055454533,2659.09723603525,5813.88645896038,6800.82659680917,1465.58463889359,1471.23859031159,1446.54820136066,1369.96143530907,1524.06671142638,1442.84263481458,1649.12173010697,1719.29247742828,1826.77950118146,3804.45321313544,6407.64664507944,4644.61271787485,7982.57302823493,898.693196886781,1309.1258526146,974.212556117635,1162.37234075877,1735.61284472042,3119.10279122719,3048.75317836621,3581.11985878776,2511.01267289772,3126.61920455839,4713.79456122978,4922.01133872824,3286.42465791547,3334.62216870311,2686.78055889254,3734.47127068346,4383.08384756277,2951.22240946309,5249.32781564346,6665.28656250459,950.643860503441,837.033256403053,912.74396761508,2176.49962517296,1771.03557760058,2520.76122896963,1748.0928046369,2107.38668816474,2361.25392097854,1637.11993952822,1741.77412164964,1115.01060537827,1270.84974923077,1103.48511057999,1377.45982088002,3774.04564451578,3047.65362746122,2783.34869678941,1556.1912745721,1802.95937623704,3113.22150421226,3894.8732147361,3718.73938714788,2598.5221432079,2740.30183063337,3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| |||
|short_description=p1@RPL28 | |||
}} |
Revision as of 01:12, 21 January 2014
Short description: | p1@RPL28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPL28_5end |
Coexpression cluster: | C884_Mesenchymal_Alveolar_Smooth_Renal_Pericytes_Fibroblast_Hepatic |
Association with transcript: | 0bp_to_ENST00000428193, ENST00000431533, ENST00000558815, ENST00000560055, ENST00000560583, NM_000991, NM_001136134, NM_001136135, NM_001136136, NM_001136137, uc002qkv.2, uc010yfy.1, uc010yfz.1, uc010yga.1, uc010ygb.1_5end |
EntrezGene: | RPL28 |
HGNC: | 10330 |
UniProt: | C9JB50G5E9L2P46779B4DEP9E9PB24 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 1.48e-14 | 441 |
multi fate stem cell | 1.23e-13 | 427 |
somatic stem cell | 1.26e-13 | 433 |
lymphocyte | 6.58e-11 | 53 |
common lymphoid progenitor | 6.58e-11 | 53 |
lymphoid lineage restricted progenitor cell | 7.41e-11 | 52 |
connective tissue cell | 1.66e-09 | 361 |
mesodermal cell | 3.23e-08 | 121 |
smooth muscle cell | 3.81e-08 | 43 |
smooth muscle myoblast | 3.81e-08 | 43 |
mesenchymal cell | 5.33e-08 | 354 |
nongranular leukocyte | 8.44e-08 | 115 |
mature alpha-beta T cell | 1.34e-07 | 18 |
alpha-beta T cell | 1.34e-07 | 18 |
immature T cell | 1.34e-07 | 18 |
mature T cell | 1.34e-07 | 18 |
immature alpha-beta T cell | 1.34e-07 | 18 |
muscle cell | 1.73e-07 | 55 |
T cell | 3.78e-07 | 25 |
pro-T cell | 3.78e-07 | 25 |
hematopoietic cell | 4.82e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.38e-09 | 371 |
epithelial vesicle | 1.49e-07 | 78 |