FFCP PHASE1:Hg19::chr19:54567136..54567157,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284415 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29455 | |||
|TSSclassifier=strong | |||
|UniProt=Q6UX27 | |||
|association_with_transcript=49bp_to_ENST00000338372,ENST00000376626,ENST00000447872,NM_198481,uc002qcw.3,uc002qcx.3,uc010erb.2_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_2_at_VSTM1_5end | |||
|id=chr19:54567136..54567157,- | |||
|ontology_enrichment_celltype=CL:0002057!2.38e-80!42;CL:0000860!4.88e-74!45;CL:0000763!1.21e-60!112;CL:0000049!1.21e-60!112;CL:0000766!1.51e-60!76;CL:0002194!1.56e-52!63;CL:0000576!1.56e-52!63;CL:0000040!1.56e-52!63;CL:0000559!1.56e-52!63;CL:0002009!1.68e-50!65;CL:0000839!2.53e-50!70;CL:0000557!2.28e-47!71;CL:0000037!5.62e-44!172;CL:0000566!5.62e-44!172;CL:0000988!1.95e-40!182;CL:0002032!4.01e-39!165;CL:0000837!4.01e-39!165;CL:0000738!6.63e-35!140;CL:0002087!3.27e-29!119;CL:0002031!5.95e-26!124;CL:0002393!2.25e-16!9;CL:0002397!2.25e-16!9;CL:0000094!3.12e-15!8;CL:0000134!1.57e-11!358;CL:0002320!5.89e-11!365;CL:0000081!1.28e-10!11;CL:0000219!5.84e-09!390;CL:0000767!6.73e-07!3;CL:0000775!8.04e-07!3;CL:0000034!9.38e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.15e-79;33!CL:0002057;1.15e-79;33!CL:0000576;1.95e-57;48!CL:0000473;7.10e-55;39!CL:0000234;7.10e-55;39!CL:0000766;3.18e-40;69!CL:0000763;4.28e-26;100!CL:0000094;4.47e-20;8!CL:0002393;1.95e-15;6!CL:0002397;1.95e-15;6!CL:0000081;3.32e-14;11!CL:0002087;4.35e-13;104!CL:0000738;1.12e-10;136!CL:0000767;8.53e-09;3!CL:0000775;9.49e-09;3!CL:0000988;1.90e-08;177!CL:0000875;5.03e-08;3!CL:0002396;5.03e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.94e-109,42;CL:0002057,8.94e-109,42;CL:0000473,1.15e-93,48;CL:0000234,1.15e-93,48;CL:0000766,7.14e-84,72;CL:0002194,1.62e-72,59;CL:0000576,1.62e-72,59;CL:0000040,1.62e-72,59;CL:0000559,1.62e-72,59;CL:0000763,3.41e-72,108;CL:0000049,3.41e-72,108;CL:0002009,8.63e-70,61;CL:0000557,1.10e-65,67;CL:0000839,1.10e-63,66;CL:0000037,1.35e-46,168;CL:0002032,9.76e-44,161;CL:0000837,9.76e-44,161;CL:0000988,1.79e-43,177;CL:0000738,5.00e-42,136;CL:0002087,2.45e-35,115;CL:0002031,5.55e-30,120;CL:0002393,1.18e-21,9;CL:0002397,1.18e-21,9;CL:0000094,4.19e-20,8;CL:0000134,2.53e-14,354;CL:0000081,3.17e-14,11;CL:0002320,9.22e-14,361;CL:0000219,8.62e-12,386;CL:0000034,8.08e-10,441;CL:0000048,2.11e-09,427;CL:0000723,4.49e-09,433;CL:0000767,8.30e-09,3;CL:0000775,1.06e-08,3;CL:0000875,5.43e-08,3;CL:0002396,5.43e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.57e-77;42!CL:0000049;3.49e-21;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.08e-60!102;UBERON:0003061!1.08e-60!102;UBERON:0002193!1.46e-55!112;UBERON:0002371!1.47e-42!80;UBERON:0001474!1.32e-38!86;UBERON:0002405!4.20e-35!115;UBERON:0004765!8.59e-31!101;UBERON:0001434!8.59e-31!101;UBERON:0003081!7.76e-24!216;UBERON:0000178!4.74e-16!15;UBERON:0000179!4.74e-16!15;UBERON:0000463!4.74e-16!15;UBERON:0002204!6.01e-15!167;UBERON:0002384!3.53e-10!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.00e-18;15!UBERON:0000179;3.00e-18;15!UBERON:0000463;3.00e-18;15!UBERON:0002390;1.33e-11;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.50e-74,98;UBERON:0003061,5.50e-74,98;UBERON:0002193,7.19e-66,108;UBERON:0002371,2.01e-59,76;UBERON:0001474,3.12e-54,82;UBERON:0002405,1.05e-48,93;UBERON:0004765,2.22e-48,90;UBERON:0001434,2.25e-42,100;UBERON:0003081,9.01e-30,203;UBERON:0002204,7.64e-22,167;UBERON:0000178,2.70e-18,15;UBERON:0000179,2.70e-18,15;UBERON:0000463,2.70e-18,15;UBERON:0000926,5.84e-15,315;UBERON:0004120,5.84e-15,315;UBERON:0006603,5.84e-15,315;UBERON:0002384,5.36e-13,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.54027849164014,5.37361157336098,12.0756576186539,0,0,0,0,0,3.52320527201817,11.0799081706375,6.21687787157439,4.12320654360118,0,0,0,7.70610665531693,14.7371618038636,9.94594650870046,9.0647324393217,10.6903650885675,9.29119112685311,8.05538698502021,17.6750887505079,9.93225365532058,8.27389633767885,15.4916324060118,17.6054432572644,9.97684399575805,11.7349644524874,7.41587498668779,11.3251040177234,15.0836642725764,14.7047538933779,6.26717470354761,13.563528718271,11.9342930149154,10.1573233520004,16.4541715160431,13.0792672289071,10.3011952755265,12.5155900420848,10.6422533905507,11.502590550034,19.5187147073409,9.17740923578565,5.28138215779854,5.74031609905618,1.04829322754188,9.77259090974507,9.6113211418564,3.37523732063868,5.13022938734247,2.58591680358817,1.0959849225878,0,0.546138611262131,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,3.96513985737078,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24304916763028,14.9580729602012,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27444828735176,4.74571241800957,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.784306353074702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55213326462519,6.88173486428138,8.54470780761244,3.09701308095126,2.87953591160336,4.53931317834902,1.62009431171434,3.17250070517708,0,0,0,0,0,0,0,6.18696051441731,10.1497846170154,0,26.6189991025135,0,0.228234679033192,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,2.43410110628385,0.99921590399346,4.22961015263549,0,0,0,0,0,0,0.593929361665277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82832850090172,0,0,0,0,0.953619473882272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55493176133945,0,0,0,0,0,0,0,0.669514372325618,0.268733889946905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0.714695326373367,1.32418394073086,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0,0,0,0.320362237703084,0.314408610199332,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.281951753939561,1.4180735354187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.13233981900981,0,0.322944549180031,0.558672428662721,0,0.12729431655633,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p2@VSTM1 | |||
}} |
Revision as of 01:01, 21 January 2014
Short description: | p2@VSTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VSTM1_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 49bp_to_ENST00000338372, ENST00000376626, ENST00000447872, NM_198481, uc002qcw.3, uc002qcx.3, uc010erb.2_5end |
EntrezGene: | VSTM1 |
HGNC: | 29455 |
UniProt: | Q6UX27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.50e-74 | 98 |
blood island | 5.50e-74 | 98 |
hemolymphoid system | 7.19e-66 | 108 |
bone marrow | 2.01e-59 | 76 |
bone element | 3.12e-54 | 82 |
immune system | 1.05e-48 | 93 |
skeletal element | 2.22e-48 | 90 |
skeletal system | 2.25e-42 | 100 |
lateral plate mesoderm | 9.01e-30 | 203 |
musculoskeletal system | 7.64e-22 | 167 |
blood | 2.70e-18 | 15 |
haemolymphatic fluid | 2.70e-18 | 15 |
organism substance | 2.70e-18 | 15 |
mesoderm | 5.84e-15 | 315 |
mesoderm-derived structure | 5.84e-15 | 315 |
presumptive mesoderm | 5.84e-15 | 315 |
connective tissue | 5.36e-13 | 371 |