FFCP PHASE1:Hg19::chr19:41859761..41859775,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7040 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11766 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=40bp_to_uc002oqh.1_5end | |||
|description=CAGE_peak_5_at_TGFB1_5end | |||
|id=chr19:41859761..41859775,- | |||
|ontology_enrichment_celltype=CL:0002371!1.50e-25!591;CL:0000048!2.90e-23!430;CL:0000723!1.95e-22!436;CL:0000144!7.77e-22!625;CL:0000034!8.66e-22!444;CL:0000003!2.30e-21!722;CL:0002320!9.36e-21!365;CL:0000738!1.15e-20!140;CL:0000134!3.45e-20!358;CL:0000988!1.23e-18!182;CL:0002087!2.02e-18!119;CL:0000037!1.07e-17!172;CL:0000566!1.07e-17!172;CL:0000219!4.73e-17!390;CL:0002057!1.22e-16!42;CL:0002032!2.32e-16!165;CL:0000837!2.32e-16!165;CL:0002031!1.21e-15!124;CL:0000012!1.70e-15!682;CL:0000548!5.67e-15!679;CL:0000004!5.67e-15!679;CL:0000255!5.67e-15!679;CL:0000766!3.01e-14!76;CL:0000860!1.07e-13!45;CL:0002009!1.59e-11!65;CL:0002194!3.44e-11!63;CL:0000576!3.44e-11!63;CL:0000040!3.44e-11!63;CL:0000559!3.44e-11!63;CL:0000557!1.23e-10!71;CL:0000763!3.73e-10!112;CL:0000049!3.73e-10!112;CL:0000839!2.79e-09!70;CL:0000063!5.01e-09!578;CL:0000791!8.95e-09!18;CL:0000789!8.95e-09!18;CL:0002420!8.95e-09!18;CL:0002419!8.95e-09!18;CL:0000790!8.95e-09!18;CL:0000838!9.46e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.30e-12;33!CL:0002057;3.30e-12;33!CL:0000473;8.30e-10;39!CL:0000234;8.30e-10;39!CL:0000791;7.69e-09;18!CL:0000789;7.69e-09;18!CL:0002419;7.69e-09;18!CL:0000576;2.63e-08;48!CL:0000766;8.12e-08;69!CL:0002087;7.07e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.57e-24,427;CL:0000723,1.26e-23,433;CL:0000034,6.52e-23,441;CL:0002320,2.24e-22,361;CL:0000738,4.34e-22,136;CL:0000134,8.59e-22,354;CL:0002087,5.24e-20,115;CL:0000988,6.80e-20,177;CL:0000037,8.53e-19,168;CL:0000219,2.11e-18,386;CL:0002032,2.01e-17,161;CL:0000837,2.01e-17,161;CL:0002031,3.76e-17,120;CL:0000860,8.18e-17,42;CL:0002057,8.18e-17,42;CL:0000766,3.12e-16,72;CL:0000473,6.92e-16,48;CL:0000234,6.92e-16,48;CL:0002009,2.81e-13,61;CL:0002194,6.10e-13,59;CL:0000576,6.10e-13,59;CL:0000040,6.10e-13,59;CL:0000559,6.10e-13,59;CL:0000557,2.71e-12,67;CL:0000763,3.73e-11,108;CL:0000049,3.73e-11,108;CL:0000839,7.86e-11,66;CL:0000791,7.40e-09,18;CL:0000789,7.40e-09,18;CL:0002420,7.40e-09,18;CL:0002419,7.40e-09,18;CL:0000790,7.40e-09,18;CL:0000838,9.92e-07,52 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-12;42!CL:0000790;7.69e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!5.72e-21!375;UBERON:0003081!3.40e-16!216;UBERON:0002390!2.02e-14!102;UBERON:0003061!2.02e-14!102;UBERON:0002204!2.00e-12!167;UBERON:0002193!4.38e-12!112;UBERON:0001474!6.01e-11!86;UBERON:0002371!1.72e-10!80;UBERON:0004765!2.91e-09!101;UBERON:0001434!2.91e-09!101;UBERON:0002405!6.37e-08!115;UBERON:0004535!5.63e-07!110 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.69e-22,371;UBERON:0003081,1.84e-17,203;UBERON:0002390,4.22e-16,98;UBERON:0003061,4.22e-16,98;UBERON:0002193,2.25e-13,108;UBERON:0002204,5.93e-13,167;UBERON:0001474,1.76e-12,82;UBERON:0002371,5.25e-12,76;UBERON:0004765,7.93e-11,90;UBERON:0000926,1.20e-10,315;UBERON:0004120,1.20e-10,315;UBERON:0006603,1.20e-10,315;UBERON:0001434,4.55e-10,100;UBERON:0002405,4.89e-10,93 | |||
|phase1_expression=2.36181893051724,1.49870366723688,1.12763523276777,1.0007329835313,0,0.872338524100369,0,2.52687949370732,2.35067065379855,0.982935746006035,0.697801167972428,3.27662058195258,4.48403862988371,2.35156070624089,3.97676850873499,1.34465029290355,4.82155622419182,2.92124036154949,2.92759679274304,2.70866327768933,5.71201935483908,5.32873026512749,0.85870796139317,1.91624195102038,3.13856598987007,9.398848906998,8.45636071334441,7.79236735005425,19.6682138424452,31.8578400420687,27.4024538269455,6.43594857135249,4.819294700452,4.43704812200145,1.16200800870452,1.84820002233648,1.76160263600908,24.3757979754026,28.6778559882303,21.2670653301535,1.34349284543955,0.971680998056939,1.80302897343931,8.57849608799432,10.2026504795979,10.9162827534517,8.13501629169896,11.1015329765893,8.981484755958,7.76769459269806,13.5765174460423,7.80391358632331,9.3081333798887,5.80936215225443,2.70852973188684,9.03563229804502,10.643339852256,6.51698104890745,7.03992952453076,10.269728866435,13.4260796417799,8.2462825046679,8.17800996248691,11.9342930149154,9.28669563611469,14.1846306172785,8.71951148593805,8.79370328398601,11.4726242052444,9.99068685643537,3.63239701580021,14.362827803515,5.37986058649504,6.12640330304631,9.14198489849687,4.61249020118427,4.83013113929929,2.10247649978109,4.66104201421532,6.84030584978997,8.55341711956087,6.02791707423292,3.51992488922645,2.18455444504853,2.66852776159066,2.13365111283254,3.2031678962881,2.29900975981793,2.64417949113945,2.86216126360609,7.39976859842283,9.39579502993502,12.2327433000073,5.28685314316103,17.3757654524276,0.790152254325231,24.5887212642291,23.1876350022007,17.6817289139578,6.8546463110178,9.12582346574053,9.46895611469466,7.79306913631645,5.12488101671798,5.30290633454707,5.98141515375777,7.04090045789041,6.91693126518646,8.06367954871245,4.60426132890293,3.31620021343018,4.92665245749589,4.15202376853769,7.22360235842225,10.4535523804977,5.77877647757588,11.8798353016596,7.90343124610049,9.36172860472161,7.32700452945422,7.1619179924206,3.8018081777935,11.1425588117552,10.2389288923535,3.74792179657038,9.94464458584871,10.6746639599736,59.0707757648466,59.9066038555056,36.0612765668169,4.87613732627923,6.03630773733273,3.96373941714944,3.61439152384566,7.01873074890245,3.18662341713812,4.7717156823066,3.89307896242109,6.14476311566441,5.76496433402666,7.99296549807447,1.83370705696798,6.19301990097322,3.33705998505986,4.21911611751088,2.61194605948901,4.65352861816028,10.7320780937404,4.57595928624102,7.05769252526173,3.57772333260069,2.58070378531837,3.12426451446835,3.95715559346807,1.67799774483962,3.57653454522088,4.17989933073621,1.55050055501597,1.06729878806013,0.33472061276467,2.81980521976403,2.28081631715554,3.66093086322254,2.20597848207521,0.81014194788176,1.96459402224975,2.46982309888787,4.16662477788292,4.5994991239765,6.6448596169769,5.1296488300514,46.1231461026221,31.022421131866,2.18047026071267,9.44246708221105,5.31848148991235,0.132409180813219,1.14734648299525,4.61068896857864,2.80338800071154,8.5399196583764,11.1000396787722,1.8672662123986,3.3677668017422,3.10577615915572,7.41651395460164,6.91411109375999,3.28050004567315,1.5608003841516,5.13424639390004,2.09228152772521,1.996386476944,2.42809416552197,1.68540968042698,2.24569588380383,1.71968044236475,4.85631171526098,7.12801714369232,2.96720315134268,1.82032272387605,8.62341770179486,2.35670559535693,2.37725187756732,3.60183350129438,9.2185300384976,2.14541457059314,3.45547535485173,3.97012641060074,1.07633781413317,4.48470516518992,3.17897851739343,1.80054657650641,4.32820622801443,0.257640540045629,5.58350568994769,1.18143432568886,9.64626351095866,1.00973509697646,2.94559675655358,6.62748832957129,0.355009592516614,7.15339897416246,5.93462073086707,1.73934767846967,1.63647672354501,3.44165514466805,1.09776335516636,0.265059536642971,1.04574548582567,2.48786532036889,2.01856680700503,0,6.25798129319264,10.2918550110862,12.4321429217232,1.39310378409594,2.16563844500876,0.828147600278907,1.51726221070292,2.41011029883482,0.992645754591546,0.871517776369625,2.37270619111097,1.21348177344148,1.96221465125346,1.92373578473195,2.95262181849859,11.2193419042757,4.115740113314,5.88034845542168,1.26755034821831,0,0,1.7658523976586,0.614942192715568,4.46076306776166,2.85350742062426,2.24803506515239,3.21692711717219,3.14800713539001,2.93227474779292,8.31947828223663,4.3299402607582,4.86907700895323,6.57488687720601,2.45422961193825,0.462985512576611,0.951270761172991,6.3216351836742,2.57545848628462,2.21595305478658,5.38209809820247,6.8370334652815,0,1.17587489739202,2.55195175036296,2.86587272649115,0.871901815541886,5.36735750831296,0,1.67292024625129,4.35389042635621,3.31475892859011,5.0496973370552,0.507983154337352,3.05590740446622,2.34434894420094,3.4214489204541,0.616964956219941,1.20137223137567,0.285826432630578,10.2039286754278,6.97536110133248,8.3605645835883,2.32689088364,28.6125156681506,5.917119267892,3.19125739901845,2.08014873822732,2.57207374262142,2.83698264046557,1.5985330740966,3.71742783511184,4.88359444852299,2.46972101034231,4.88604276440603,3.19852753868291,3.16780749173372,3.91871190177462,5.22920075160176,2.39935178836937,2.43247561282381,1.50677127429638,4.21667878966063,7.18874566474748,8.04033550838797,5.70547620162874,3.18518874668674,5.13690806375959,4.65558504423729,3.47463946379935,48.4695670096741,55.4162867388959,49.0270398588639,2.54094624222463,2.60279707715243,0.773288812777695,0.837581326671744,0.637938751653163,17.9761685747324,11.966458368161,9.53155680902882,3.18997878469764,2.50085260529839,1.08506009479894,4.57535895367776,2.85486382075459,2.68094105557689,5.15422225967938,9.93122129101472,15.9185252839189,4.1389228517002,9.29915837949611,9.21845842708516,2.17209036170207,9.79005787313703,8.23544217146054,17.1617461681997,14.2371372540287,28.4962579335196,2.12189300012382,3.32870879020994,6.95497674658265,3.96972492510043,0.61384789315225,7.57782254969299,1.28139149255701,7.16390148693385,4.50390979202101,4.45254199334973,4.47208112027701,5.50441348470694,2.87445046048332,2.59627214591811,3.37010097533882,1.20859449591622,2.40607764363942,3.86740153530765,3.3296189967736,2.54927635209404,3.2781103739856,2.25599806453706,2.6185214615501,14.1182958451834,4.38417673959782,3.79985864014353,3.4120015221269,2.38131187387122,1.94324324491925,9.25363516141736,6.50271450105247,14.0473136679359,1.52925763827023,3.3243040357149,1.56712328305525,0.657779629937804,0,0.256450125116389,2.29610251989794,0.650756789328606,1.23649213977267,15.2921006246633,10.5612159898353,5.74265537996172,2.60024098414608,1.6068392984416,3.38347514022427,1.84858340537573,3.07007349452259,0.964856007391714,3.00776685631166,2.75531718437034,3.92042486114064,6.85546674479878,0.991709492165869,1.92190067365106,0.255225424989168,3.13589120652205,5.11330104227014,1.25924938732256,6.970372701606,6.46870518369786,7.98459045475533,8.69932992075073,9.63685939340384,2.00374841438788,3.34942532423701,1.2655176988749,2.47819252100972,2.303080121802,1.71175595213568,14.6373494045931,7.06453776179307,1.07923474549989,1.64722217841633,1.7671860351853,9.70475911551917,12.6808256938407,2.94880919367287,6.82687234725426,3.89941583410055,3.16950440270266,4.23149725364756,3.81794666275024,22.6016233240486,13.7841335886531,5.97095077717098,4.82295973779139,3.47265320560013,1.31178950409327,4.05820753925408,6.8161169581945,6.19730325570931,2.29458163526482,3.04572027140676,7.133421029625,2.48332744849418,2.9555068941673,4.28083360847872,5.69209760648573,5.94889024416471,2.11688647996127,6.03272047982209,5.44454924306613,1.60044461320525,6.02707521739722,1.68471475667626,10.6423236848802,6.20253180558791,11.6712950123399,9.1756464857085,11.3929437434833,6.90872148827588,4.93634727703433,7.78167973431261,10.2605973075242,15.8625035258854,2.56377770705936,0.962479855263359,0.980160863924127,2.41544127663434,1.15415370381156,2.20539714380084,0.159426272728822,1.79621434289535,2.10655907145603,3.38677732358213,0.649243880549111,2.24637742490767,3.42352018549788,1.88015874927628,0,1.18504244461122,2.72999727676289,2.62339619348362,0.851692475380653,1.03051603426729,1.22896305723383,0.447352215784832,1.16794399198336,1.9538809540204,7.2385605212763,35.6953456948366,4.32729085561573,1.6653598399891,23.9677908649344,0,1.46508179271894,4.12625773948346,3.00897137549192,3.12549761487054,2.3874448473769,2.96964680832639,2.15012491469462,0.994147647766298,0.281338832821026,2.11486539543521,0.988823245360557,0,4.98119970627674,2.48655523978033,0,8.07922591767023,5.04647702390385,2.48831670129446,1.88723537409386,0,2.04628948090749,2.66337195219721,11.974154617347,10.0023291130173,0.969332746095218,0.556608588971108,0,0.7812832832557,0,2.89999830173917,1.137934482855,2.2882828526349,2.6002644994473,0.344743373241465,0.291604613383254,0.694499979733169,0,0.60298219312704,0,0.442317039724898,0.295547618953547,1.09692698576986,0.10893846351899,2.23077990845765,2.84715956464049,0.569710279235006,3.68902247020896,1.07709173291727,0.108647371922008,3.50901275705111,2.01514705484097,4.79731298416771,1.02193298195737,3.61054589708557,3.15802195610297,3.60953056987489,5.09762589226123,5.37029078322697,3.22581345631115,3.49660473756833,0.210998064528027,0.652931232636591,1.27217764290547,0.216388639742091,0,0.707660516026713,0,0.296521128680622,1.48276726735803,1.56632924258183,0.808813595768125,5.61804353109152,0,1.82454789215666,0.391329237864179,1.45668227720456,1.57833761139756,1.20990716048664,0.91821828489147,4.7389934721366,0.300646838828985,0.933193722575224,5.98188485436467,1.65495977937749,2.5114633472578,7.16834578637753,4.83836228250648,4.02156551738102,0.347119476670262,5.58556665261953,5.92002604746737,1.92199335066233,2.75177651954586,0.483781656445426,0.438535902517113,0.574808199372465,2.42472541221049,0.264768380074501,2.03382666702479,3.83717389010903,3.57686301065381,0.316553979779393,0.782205530939212,3.76746455182208,1.49417096317547,2.99714414373195,1.87317542300338,2.29073192331831,1.20116498503375,0.576219191952599,2.60930324687408,1.64985824231757,3.94122197613481,4.70712808405499,3.05994652908965,4.91216002832582,0,1.36905378891993,2.55493176133945,3.86788897277961,3.94331031418972,2.23425921017803,1.14580212005842,0.717873024576814,1.19807400299395,0.858452096273142,0.446342914883745,1.2764859772478,5.76479813667846,1.16495949527454,5.19969003227676,4.53287221096415,5.99891540302246,2.46068703786872,2.96356662230246,0,0.544813624446302,0.964518890790115,0.412618309791701,0.415440338029185,3.37460837327251,7.7380195455795,0.546746009922222,5.70238968918752,1.33969702408637,1.78345599658994,3.16801009558219,1.07572403599707,4.41404953834724,2.1440859791201,1.32418394073086,6.102444903714,2.17199840701485,1.72844298240254,3.91904832131291,13.1703210718736,12.8064332368969,1.87426823963964,4.19254738624465,1.17241786942466,1.32506888912221,0.387848869084652,0.39669780522807,0.855434189421647,9.86741031243341,1.9221734262185,0.78602152549833,5.79934677486074,1.9846640872478,1.58089305518355,0.487170393523584,1.91502377331055,0,0.5013797880454,0,0,0,0,0.244052529803926,0.250381861413,0.573409195690071,0.554645257684261,1.42821726765182,1.798532254171,6.62396162199165,0.606596470166591,0,2.11739237728355,0,0,8.65677856743869,7.24511260526396,3.88364103051829,5.49268715297758,4.52822223154635,2.66943366478961,0.915360273587694,4.53692771289717,6.372925223894,1.92211694986524,2.38945150745554,0.449803112163605,4.65788870628778,5.39118070193112,6.38020114939188,0.521745061811734,5.86004675089152,1.52322084867518,0.406870733204662,2.72772988803839,2.47044281197723,0.928067519756987,1.59238355479446,0,5.49433128292469,4.71449284272287,26.4988286280167,5.39335525140449,1.28664954824955,2.08795433572169,1.36023555307363,2.77826969188601,1.71315693154527,3.04451029838529,1.23520578864389,0.657852148736121,2.12026975135057,1.92914038270915,0.337884881306145,2.30617366729152,3.79973375904318,0.911579868532147,0.138258436151731,0.779441235357554,0.664324201566815,0.817826971279221,4.91414773269619,4.17813944881323,2.95836972702078,3.79976052124367,1.38699248602383,3.2720846135555,7.37770739636887,2.76158925377761,0.979156554036111,2.48830904013189,0.895260599125562,0.431299245586727,0.471797825567689,0,1.18812770967818,0.850299680406731,5.08136633461909,5.02780426175919,4.77006525980128,1.34064966502131,0.80057074828547,2.82140754952547,1.531227386766,0.578063025868136,0,1.11743701340006,1.43581454968528,0,0.691572524642179,0.807378228159255,1.42769420259154,2.84628383652974,0.589848616738702,1.83428598521679,1.27078232765372,11.0600807685478,7.59395918666111,2.98374333174412,2.18109952212846,7.46308754203024,3.12605604493237,0.261906694481422,1.63771917510097,3.69640215542613,0.607838261565552,0,0,0.570742291745161,0,0,0,0.703484977438482,1.40538670403555,0.535701835878287,0,0.606965604236632,0.455324382702595,3.28198769601764,3.11131766400604,6.17356833974707,0.543757863814654,0.591954962065642,2.2456829767954,3.00324785108587,2.51177897121645,0.157115589916002,0,0,4.10262423315381,3.8220135030964,1.57248397188644,1.10609528212909,0.581207126840626,1.21700790611806,3.20684545892101,4.35153944742377,4.0972434502548,6.91259661814092,0,0.946656005844523,1.19298766662821,0.846774100381858,0,2.79185747097888,2.8666168169323,0,0,1.46301509978723,0,0.718639647993729,1.1598144313382,0.971421986118279,2.57333409808316,2.18845852677505,0,0,0,0,1.389134845943,0,0,3.92237314806249,0.235676547101626,0.392616934229891,1.18818560130834,2.9585900930838,10.5354811106446,5.07513157091209,3.60964172652032,5.69664588772095,1.07132363163395,1.41157948686277,0.722172300202514,2.19100916473955,0.917458566809082,0.860037498908708,1.10440093535229,0.679914901909147,0,0,4.83593523616777,3.23522940041993,2.59575937274273,1.00933139868063,0.327796715891087,9.62908607686921,0.203977659483963,0.26721740526556,0.275684698604535,1.25353769646188,1.66713136080127,0.535928260312357,0.829169439458779,0.413731983447581,1.0661699095049,0.23806443146374,2.32520075409622,2.17261500035503,1.34558235096736,0.572824424503484,0.202117188958219,2.61260097476354,0.684466602170562,3.83906702183149,1.64961072403156,1.66330178273007,2.03508171527436,0.533636729388577,3.8614456457388,5.12003652007545,0,1.95586310692586,1.22068853494722,0.665756774185513,1.61019034872821,6.41136984606466 | |||
|short_description=p5@TGFB1 | |||
}} |
Revision as of 23:28, 20 January 2014
Short description: | p5@TGFB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TGFB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 40bp_to_uc002oqh.1_5end |
EntrezGene: | TGFB1 |
HGNC: | 11766 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.69e-22 | 371 |
lateral plate mesoderm | 1.84e-17 | 203 |
hematopoietic system | 4.22e-16 | 98 |
blood island | 4.22e-16 | 98 |
hemolymphoid system | 2.25e-13 | 108 |
musculoskeletal system | 5.93e-13 | 167 |
bone element | 1.76e-12 | 82 |
bone marrow | 5.25e-12 | 76 |
skeletal element | 7.93e-11 | 90 |
mesoderm | 1.20e-10 | 315 |
mesoderm-derived structure | 1.20e-10 | 315 |
presumptive mesoderm | 1.20e-10 | 315 |
skeletal system | 4.55e-10 | 100 |
immune system | 4.89e-10 | 93 |