FFCP PHASE1:Hg19::chr19:36246080..36246107,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C339 | |||
|description=CAGE_peak_at_chr19:36246080..36246107,+ | |||
|id=chr19:36246080..36246107,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.90e-26!180;CL:0000680!4.56e-19!57;CL:0000056!4.56e-19!57;CL:0000355!4.56e-19!57;CL:0000187!1.56e-18!54;CL:0000183!3.51e-18!59;CL:0000393!1.81e-15!60;CL:0000211!1.81e-15!60;CL:0000192!2.48e-14!42;CL:0000514!2.48e-14!42;CL:0000057!2.79e-13!75;CL:0000136!2.54e-09!15;CL:0000359!7.21e-09!32;CL:0002334!2.98e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000192;9.70e-13;43!CL:0000136;3.33e-11;13!CL:0000187;5.79e-11;55!CL:0000393;3.38e-09;61!CL:0000211;3.38e-09;61!CL:0002334;1.13e-08;12!CL:0000359;7.36e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,7.50e-19,55;CL:0000680,3.31e-18,58;CL:0000056,3.31e-18,58;CL:0000355,3.31e-18,58;CL:0000192,2.23e-16,43;CL:0000514,2.23e-16,43;CL:0000393,1.05e-15,61;CL:0000211,1.05e-15,61;CL:0000136,5.98e-13,15;CL:0000057,1.58e-09,76;CL:0002334,9.60e-09,12;CL:0000359,2.09e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000514;9.70e-13;43!CL:0000355;1.06e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!4.35e-23!63;UBERON:0001015!4.35e-23!63;UBERON:0000383!4.35e-23!63;UBERON:0004290!1.75e-22!70;UBERON:0001134!6.00e-22!61;UBERON:0002036!6.00e-22!61;UBERON:0003082!6.00e-22!61;UBERON:0000914!9.98e-22!83;UBERON:0002329!9.98e-22!83;UBERON:0003077!9.98e-22!83;UBERON:0003059!9.98e-22!83;UBERON:0007282!9.98e-22!83;UBERON:0009618!9.98e-22!83;UBERON:0007285!9.98e-22!83;UBERON:0000486!1.42e-17!82;UBERON:0000475!2.39e-16!365;UBERON:0005256!8.60e-15!143;UBERON:0000481!1.31e-12!347;UBERON:0007023!1.36e-11!115;UBERON:0000119!2.40e-10!312;UBERON:0002100!3.27e-10!216;UBERON:0000483!6.65e-10!309;UBERON:0000468!1.46e-09!659;UBERON:0004872!5.53e-09!84;UBERON:0000479!8.16e-09!787;UBERON:0001013!1.37e-08!14;UBERON:0000490!2.82e-08!138;UBERON:0001009!1.16e-07!113;UBERON:0007100!1.26e-07!27;UBERON:0001135!1.26e-07!15;UBERON:0002049!1.47e-07!79;UBERON:0007798!1.47e-07!79;UBERON:0003104!6.62e-07!238;UBERON:0009142!6.62e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;6.89e-12;31!UBERON:0001015;6.89e-12;31!UBERON:0000383;6.89e-12;31!UBERON:0001013;4.42e-09;14!UBERON:0001135;5.07e-09;15!UBERON:0004457;8.92e-08;9!UBERON:0000042;8.92e-08;9!UBERON:0007100;1.15e-07;25!UBERON:0003688;2.42e-07;6!UBERON:0002358;2.42e-07;6!UBERON:0003684;2.42e-07;6!UBERON:0001178;2.42e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002385,2.55e-23,64;UBERON:0001015,2.55e-23,64;UBERON:0000383,2.55e-23,64;UBERON:0001134,7.75e-22,62;UBERON:0002036,7.75e-22,62;UBERON:0003082,7.75e-22,62;UBERON:0002329,2.77e-21,71;UBERON:0003059,2.77e-21,71;UBERON:0007282,2.77e-21,71;UBERON:0004290,2.77e-21,71;UBERON:0009618,2.77e-21,71;UBERON:0007524,3.39e-21,73;UBERON:0003077,9.26e-21,72;UBERON:0007285,9.26e-21,72;UBERON:0000486,5.40e-18,83;UBERON:0007503,6.40e-18,78;UBERON:0005256,1.91e-16,122;UBERON:0003104,3.48e-16,160;UBERON:0009142,3.48e-16,160;UBERON:0000926,5.18e-11,315;UBERON:0004120,5.18e-11,315;UBERON:0006603,5.18e-11,315;UBERON:0002100,2.12e-10,199;UBERON:0000490,2.37e-09,148;UBERON:0001013,3.42e-09,14;UBERON:0001135,3.93e-09,15;UBERON:0004872,2.28e-08,83;UBERON:0000479,5.45e-08,773;UBERON:0007100,7.61e-08,27;UBERON:0003688,2.44e-07,6;UBERON:0002358,2.44e-07,6;UBERON:0003684,2.44e-07,6;UBERON:0001178,2.44e-07,6;UBERON:0001009,2.61e-07,112 | |||
|phase1_expression=7.99384868790449,6.85121676451146,19.451707765244,5.00366491765652,20.113249249228,5.23403114460221,5.06599756336621,10.1075179748293,30.0363472429814,0,0,0.655324116390517,0,1.60896258848061,2.65117900582333,1.34465029290355,1.20538905604795,1.46062018077475,1.46379839637152,0.123121058076788,0.816002764977012,0.313454721478088,0.572471974262113,0.547497700291537,0.376627918784408,0.0764134057479513,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.68280343881454,2.55725123687061,1.80719576192283,1.50401373190767,3.47631645505977,0,0.486634870302636,0.0945348171640679,0.221729397462564,0.175669571386252,1.37528029272598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,6.95760732373446,2.78587125662075,2.64818361626438,3.15520282823695,3.90135220418193,1.12135520028461,0,0,1.24484414159907,0.134710672069688,0.163461903113459,0.756787138224657,0.576175924479999,0.468642863667593,3.43376084513353,0.570471821544449,3.28787097213962,0.352303495931295,0,0.421352420106746,1.22492502752936,0.737005903870608,1.65321249881225,0,0,1.82032272387605,5.74894513452991,0.168336113954066,0.750711119231785,0,0.438977620880838,0.30648779579902,1.20190447125277,0.567160915800105,0,0.85422955527427,1.90738711043606,0.300091096084402,1.33968288009971,0.257640540045629,1.48893485065272,0.168776332241266,1.46155507741798,0.757301322732344,1.74894807420369,1.93975268182574,1.06502877754984,2.21654616100809,1.52604533079439,0,0,0,0,0,0.232387885739037,0.10366105501537,0.252320850875628,0,1.56449532329816,1.28648187638577,0,8.8229906326076,19.4907460050788,0,0,0,0,0,0,0,0,0,0.738155454624648,2.80483547606892,2.057870056657,8.82052268313252,0,0,0,0,0,1.3725424823882,0,0,0,0.0925884451585296,0.977424915930974,1.03993478527958,0,0.115930404975077,0.587043471179108,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0.126995788584338,0,0,1.71072446022705,0.205654985406647,0.300343057843917,0,0.672786506072164,0.87192013766656,0.51336800074665,0.387815147273333,78.6844180874141,0.845302752556,6.38251479803689,7.28052058379563,0.514414748524284,0,0.266422179016099,20.1598971057988,38.5261339827925,4.93944202068461,0.65147236858747,12.7941101547316,0.791951872933429,0,0,0.099972991182057,0,0,0,0.958499421966331,1.14861935834114,1.42636905040718,0.868687840005475,1.64381058040307,0.179060963239896,0,0,0,0,0,1.30139853857622,0.773288812777695,0,0,0,0,0,6.01188309423785,7.50255781589516,3.25518028439683,0.415941723061614,0.713715955188647,0,0.117141414992713,0,0,4.1389228517002,1.32845119707087,0.921845842708516,2.5196248195744,1.56640925970192,0.343143423810856,0,0,0,0,0,1.20956117331872,6.20269519546942,0.306923946576125,3.64858122762996,14.2234455673828,1.53512174720011,13.3508754549194,1.48418066444991,2.31314540703983,4.79416658345443,2.87445046048332,2.59627214591811,3.48631135379878,0,0,0,0.918515585316854,2.73136752010076,7.6052160676466,0,0,0,0,0,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0.976135183992909,0.412164046590889,0,0,0,0,6.42735719376638,4.44685304143761,0.616194468458578,0.767518373630648,0.275673144969061,2.36324538710202,3.33538396002726,0.93749290157711,2.22580089116843,0,0,0,0,22.3125863662697,1.88887408098384,0.6970372701606,2.7723022215848,1.06461206063404,1.73986598415015,0.55597265731176,0.143124886741991,0.744316738719335,1.58189712359363,4.76575484809562,13.3066851481894,10.698474700848,6.36406495851874,0,2.51821440616641,5.4907405947211,2.94531005864216,0.808729926293264,4.75530963519025,0,2.43816869544795,1.21856744815642,0,2.45699840534374,6.6460553018245,5.65040583101214,3.85955740482287,1.99031692572366,3.06915619677634,18.520817096534,7.87073702455959,0.811641507850816,1.239293992399,1.97186921772569,3.72869515730534,5.79669341977415,0,6.03093808920016,12.6664581178598,2.63435914367922,1.13841952129715,1.74967360122491,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,2.93016358543788,0,0,0,0,0,0,0,0.422008249231538,0,0,0,6.77443160053637,1.65770349318689,0,0,0,0.311039587661807,0,0,0,11.5412784595212,0,0,0,0.74214478529481,0,0,0,3.62499787717397,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,5.1556673197544,0,0,0,0,0,0.824378340616761,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,3.98104772431402,0.796118080530053,3.05515072466813,0,0,0,0.404406797884062,9.63093176758547,0.702793337176017,0,0,0,2.36750641709634,3.62972148145992,0,1.13735843331278,0,0,0,0,0,0,0,0,0,0,0,3.84398670132466,3.26773461696071,0,0,0,2.13375836274523,0.0882561266915003,5.87549926029384,0,0,0.0633107959558787,0,0.240476460754601,7.04394882639863,0,0,0,0.171594997861965,0,0,0,0,0,0,1.15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| |||
|short_description=p@chr19:36246080..36246107,+ | |||
}} |
Revision as of 22:52, 20 January 2014
Short description: | p@chr19:36246080..36246107, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr19:36246080..36246107, + |
Coexpression cluster: | C339_Mesenchymal_heart_leiomyoma_Adipocyte_Smooth_skeletal_tongue |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 7.50e-19 | 55 |
muscle precursor cell | 3.31e-18 | 58 |
myoblast | 3.31e-18 | 58 |
multi-potent skeletal muscle stem cell | 3.31e-18 | 58 |
smooth muscle cell | 2.23e-16 | 43 |
smooth muscle myoblast | 2.23e-16 | 43 |
electrically responsive cell | 1.05e-15 | 61 |
electrically active cell | 1.05e-15 | 61 |
fat cell | 5.98e-13 | 15 |
fibroblast | 1.58e-09 | 76 |
preadipocyte | 9.60e-09 | 12 |
vascular associated smooth muscle cell | 2.09e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
muscle tissue | 2.55e-23 | 64 |
musculature | 2.55e-23 | 64 |
musculature of body | 2.55e-23 | 64 |
skeletal muscle tissue | 7.75e-22 | 62 |
striated muscle tissue | 7.75e-22 | 62 |
myotome | 7.75e-22 | 62 |
somite | 2.77e-21 | 71 |
presomitic mesoderm | 2.77e-21 | 71 |
presumptive segmental plate | 2.77e-21 | 71 |
dermomyotome | 2.77e-21 | 71 |
trunk paraxial mesoderm | 2.77e-21 | 71 |
dense mesenchyme tissue | 3.39e-21 | 73 |
paraxial mesoderm | 9.26e-21 | 72 |
presumptive paraxial mesoderm | 9.26e-21 | 72 |
multilaminar epithelium | 5.40e-18 | 83 |
epithelial vesicle | 6.40e-18 | 78 |
trunk mesenchyme | 1.91e-16 | 122 |
mesenchyme | 3.48e-16 | 160 |
entire embryonic mesenchyme | 3.48e-16 | 160 |
mesoderm | 5.18e-11 | 315 |
mesoderm-derived structure | 5.18e-11 | 315 |
presumptive mesoderm | 5.18e-11 | 315 |
trunk | 2.12e-10 | 199 |
unilaminar epithelium | 2.37e-09 | 148 |
adipose tissue | 3.42e-09 | 14 |
smooth muscle tissue | 3.93e-09 | 15 |
splanchnic layer of lateral plate mesoderm | 2.28e-08 | 83 |
tissue | 5.45e-08 | 773 |
primary circulatory organ | 7.61e-08 | 27 |
omentum | 2.44e-07 | 6 |
peritoneum | 2.44e-07 | 6 |
abdominal cavity | 2.44e-07 | 6 |
visceral peritoneum | 2.44e-07 | 6 |
circulatory system | 2.61e-07 | 112 |