FFCP PHASE1:Hg19::chr19:5622779..5622813,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9667 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21605 | |||
|TSSclassifier=strong | |||
|UniProt=B4DU53 | |||
|association_with_transcript=0bp_to_ENST00000536849_5end | |||
|coexpression_cluster_id=C3547 | |||
|description=CAGE_peak_1_at_SAFB2_5end | |||
|id=chr19:5622779..5622813,- | |||
|ontology_enrichment_celltype=CL:0000037!3.70e-34!172;CL:0000566!3.70e-34!172;CL:0002032!2.21e-32!165;CL:0000837!2.21e-32!165;CL:0000988!1.13e-31!182;CL:0000738!2.35e-27!140;CL:0002031!4.59e-22!124;CL:0000763!2.91e-21!112;CL:0000049!2.91e-21!112;CL:0002087!1.41e-20!119;CL:0002057!2.31e-16!42;CL:0000860!4.12e-15!45;CL:0000766!2.01e-14!76;CL:0000557!3.16e-12!71;CL:0000839!1.90e-11!70;CL:0002009!1.82e-10!65;CL:0000838!2.36e-10!52;CL:0000542!3.03e-10!53;CL:0000051!3.03e-10!53;CL:0002194!6.97e-10!63;CL:0000576!6.97e-10!63;CL:0000040!6.97e-10!63;CL:0000559!6.97e-10!63;CL:0000791!2.92e-07!18;CL:0000789!2.92e-07!18;CL:0002420!2.92e-07!18;CL:0002419!2.92e-07!18;CL:0000790!2.92e-07!18;CL:0000084!3.88e-07!25;CL:0000827!3.88e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.76e-15;33!CL:0002057;5.76e-15;33!CL:0000576;4.63e-10;48!CL:0000473;3.39e-09;39!CL:0000234;3.39e-09;39!CL:0002087;2.13e-08;104!CL:0000766;8.89e-08;69!CL:0000763;1.06e-07;100!CL:0000791;2.99e-07;18!CL:0000789;2.99e-07;18!CL:0002419;2.99e-07;18!CL:0000084;3.90e-07;25!CL:0000988;6.33e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.06e-35,168;CL:0002032,1.25e-33,161;CL:0000837,1.25e-33,161;CL:0000988,3.57e-33,177;CL:0000738,1.29e-28,136;CL:0002031,3.05e-23,120;CL:0000763,1.66e-22,108;CL:0000049,1.66e-22,108;CL:0002087,9.94e-22,115;CL:0000860,2.31e-16,42;CL:0002057,2.31e-16,42;CL:0000766,1.14e-15,72;CL:0000557,2.24e-13,67;CL:0000839,1.51e-12,66;CL:0000473,1.92e-12,48;CL:0000234,1.92e-12,48;CL:0002009,1.50e-11,61;CL:0002194,6.11e-11,59;CL:0000576,6.11e-11,59;CL:0000040,6.11e-11,59;CL:0000559,6.11e-11,59;CL:0000838,2.36e-10,52;CL:0000542,3.03e-10,53;CL:0000051,3.03e-10,53;CL:0000791,2.92e-07,18;CL:0000789,2.92e-07,18;CL:0002420,2.92e-07,18;CL:0002419,2.92e-07,18;CL:0000790,2.92e-07,18;CL:0000084,3.88e-07,25;CL:0000827,3.88e-07,25 | |||
|ontology_enrichment_development_v019=CL:0002057;2.66e-12;42!CL:0000790;2.99e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.04e-26!115;UBERON:0001049!6.56e-17!57;UBERON:0005068!6.56e-17!57;UBERON:0006241!6.56e-17!57;UBERON:0007135!6.56e-17!57;UBERON:0002390!2.27e-14!102;UBERON:0003061!2.27e-14!102;UBERON:0002780!3.30e-14!41;UBERON:0001890!3.30e-14!41;UBERON:0006240!3.30e-14!41;UBERON:0003080!9.10e-14!42;UBERON:0001017!1.19e-13!82;UBERON:0000955!1.77e-13!69;UBERON:0006238!1.77e-13!69;UBERON:0000073!2.82e-13!94;UBERON:0001016!2.82e-13!94;UBERON:0002616!2.84e-13!59;UBERON:0005743!3.90e-13!86;UBERON:0002193!1.70e-12!112;UBERON:0002346!1.97e-11!90;UBERON:0002020!2.94e-11!34;UBERON:0003528!2.94e-11!34;UBERON:0001893!4.92e-11!34;UBERON:0003075!7.96e-11!86;UBERON:0007284!7.96e-11!86;UBERON:0002791!8.76e-11!33;UBERON:0002371!2.05e-10!80;UBERON:0001869!2.73e-10!32;UBERON:0001474!2.84e-10!86;UBERON:0002619!1.82e-08!22;UBERON:0003056!3.62e-08!61;UBERON:0002405!5.79e-08!115;UBERON:0001950!1.60e-07!20;UBERON:0000956!1.80e-07!25;UBERON:0000203!1.80e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.12e-10;41!UBERON:0001890;2.12e-10;41!UBERON:0000073;4.31e-10;53!UBERON:0002616;4.31e-10;53!UBERON:0001893;1.06e-09;34!UBERON:0003528;1.12e-09;34!UBERON:0002020;1.12e-09;34!UBERON:0002791;2.21e-09;32!UBERON:0001869;2.71e-09;32!UBERON:0002619;1.76e-08;22!UBERON:0007023;2.52e-08;114!UBERON:0001017;1.41e-07;75!UBERON:0001950;1.55e-07;20!UBERON:0000956;1.77e-07;25!UBERON:0000203;1.77e-07;25!UBERON:0001016;5.30e-07;83!UBERON:0000955;6.63e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.92e-26,114;UBERON:0001049,2.55e-17,56;UBERON:0005068,2.55e-17,56;UBERON:0006241,2.55e-17,56;UBERON:0007135,2.55e-17,56;UBERON:0000073,2.20e-16,53;UBERON:0002616,2.20e-16,53;UBERON:0002390,2.39e-15,98;UBERON:0003061,2.39e-15,98;UBERON:0002780,3.30e-14,41;UBERON:0001890,3.30e-14,41;UBERON:0003080,3.30e-14,41;UBERON:0006240,3.30e-14,41;UBERON:0001016,5.65e-14,89;UBERON:0001017,6.69e-14,81;UBERON:0000955,9.16e-14,68;UBERON:0006238,9.16e-14,68;UBERON:0002193,2.62e-13,108;UBERON:0002346,1.60e-11,86;UBERON:0002371,2.52e-11,76;UBERON:0003528,2.94e-11,34;UBERON:0002020,2.94e-11,34;UBERON:0001474,4.00e-11,82;UBERON:0001893,4.92e-11,34;UBERON:0003075,6.48e-11,82;UBERON:0007284,6.48e-11,82;UBERON:0002405,1.25e-10,93;UBERON:0002791,1.97e-10,32;UBERON:0001869,2.73e-10,32;UBERON:0003056,9.00e-09,61;UBERON:0002619,1.82e-08,22;UBERON:0004765,1.32e-07,90;UBERON:0001950,1.60e-07,20;UBERON:0000956,1.80e-07,25;UBERON:0000203,1.80e-07,25 | |||
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| |||
|short_description=p1@SAFB2 | |||
}} |
Revision as of 20:45, 20 January 2014
Short description: | p1@SAFB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAFB2_5end |
Coexpression cluster: | C3547_granulocyte_acute_Eosinophils_salivary_hepatoblastoma_cerebellum_tridermal |
Association with transcript: | 0bp_to_ENST00000536849_5end |
EntrezGene: | SAFB2 |
HGNC: | 21605 |
UniProt: | B4DU53 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.92e-26 | 114 |
neural tube | 2.55e-17 | 56 |
neural rod | 2.55e-17 | 56 |
future spinal cord | 2.55e-17 | 56 |
neural keel | 2.55e-17 | 56 |
regional part of nervous system | 2.20e-16 | 53 |
regional part of brain | 2.20e-16 | 53 |
hematopoietic system | 2.39e-15 | 98 |
blood island | 2.39e-15 | 98 |
regional part of forebrain | 3.30e-14 | 41 |
forebrain | 3.30e-14 | 41 |
anterior neural tube | 3.30e-14 | 41 |
future forebrain | 3.30e-14 | 41 |
nervous system | 5.65e-14 | 89 |
central nervous system | 6.69e-14 | 81 |
brain | 9.16e-14 | 68 |
future brain | 9.16e-14 | 68 |
hemolymphoid system | 2.62e-13 | 108 |
neurectoderm | 1.60e-11 | 86 |
bone marrow | 2.52e-11 | 76 |
brain grey matter | 2.94e-11 | 34 |
gray matter | 2.94e-11 | 34 |
bone element | 4.00e-11 | 82 |
telencephalon | 4.92e-11 | 34 |
neural plate | 6.48e-11 | 82 |
presumptive neural plate | 6.48e-11 | 82 |
immune system | 1.25e-10 | 93 |
regional part of telencephalon | 1.97e-10 | 32 |
cerebral hemisphere | 2.73e-10 | 32 |
pre-chordal neural plate | 9.00e-09 | 61 |
regional part of cerebral cortex | 1.82e-08 | 22 |
skeletal element | 1.32e-07 | 90 |
neocortex | 1.60e-07 | 20 |
cerebral cortex | 1.80e-07 | 25 |
pallium | 1.80e-07 | 25 |