FFCP PHASE1:Hg19::chr17:74722645..74722669,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23210 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19355 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000344991_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_JMJD6_5end | |||
|id=chr17:74722645..74722669,- | |||
|ontology_enrichment_celltype=CL:0002057!1.52e-20!42;CL:0000860!3.24e-20!45;CL:0000766!2.10e-18!76;CL:0000557!2.96e-15!71;CL:0000839!2.06e-14!70;CL:0002009!7.02e-14!65;CL:0002194!5.96e-13!63;CL:0000576!5.96e-13!63;CL:0000040!5.96e-13!63;CL:0000559!5.96e-13!63;CL:0000134!6.67e-13!358;CL:0000738!1.75e-11!140;CL:0002320!1.78e-11!365;CL:0000048!2.11e-11!430;CL:0000219!7.85e-11!390;CL:0000723!1.29e-10!436;CL:0000763!1.14e-09!112;CL:0000049!1.14e-09!112;CL:0000034!1.53e-09!444;CL:0002031!8.82e-08!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.30e-19;33!CL:0002057;1.30e-19;33!CL:0000473;1.76e-12;39!CL:0000234;1.76e-12;39!CL:0000576;4.46e-11;48!CL:0000766;3.62e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.50e-20,42;CL:0002057,1.50e-20,42;CL:0000766,2.93e-18,72;CL:0000473,5.00e-16,48;CL:0000234,5.00e-16,48;CL:0000557,4.49e-15,67;CL:0000839,3.20e-14,66;CL:0002009,1.05e-13,61;CL:0002194,9.15e-13,59;CL:0000576,9.15e-13,59;CL:0000040,9.15e-13,59;CL:0000559,9.15e-13,59;CL:0000134,1.90e-12,354;CL:0000738,3.54e-11,136;CL:0000048,4.77e-11,427;CL:0002320,4.77e-11,361;CL:0000219,2.07e-10,386;CL:0000723,2.74e-10,433;CL:0000763,2.33e-09,108;CL:0000049,2.33e-09,108;CL:0000034,3.22e-09,441;CL:0002031,1.69e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;2.07e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.02e-14!80;UBERON:0001474!2.21e-13!86;UBERON:0002405!1.75e-11!115;UBERON:0003081!2.22e-11!216;UBERON:0004765!3.57e-11!101;UBERON:0001434!3.57e-11!101;UBERON:0002384!6.88e-11!375;UBERON:0002390!2.54e-10!102;UBERON:0003061!2.54e-10!102;UBERON:0002204!5.47e-10!167;UBERON:0000926!1.05e-09!448;UBERON:0004120!1.05e-09!448;UBERON:0006603!1.05e-09!448;UBERON:0002193!8.93e-09!112;UBERON:0000479!6.15e-07!787 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.22e-13,76;UBERON:0001474,4.13e-13,82;UBERON:0003081,4.35e-11,203;UBERON:0004765,1.78e-10,90;UBERON:0002384,1.81e-10,371;UBERON:0002405,2.11e-10,93;UBERON:0002390,5.65e-10,98;UBERON:0003061,5.65e-10,98;UBERON:0001434,9.58e-10,100;UBERON:0002204,5.72e-09,167;UBERON:0000926,1.57e-08,315;UBERON:0004120,1.57e-08,315;UBERON:0006603,1.57e-08,315;UBERON:0002193,2.08e-08,108 | |||
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| |||
|short_description=p3@JMJD6 | |||
}} |
Revision as of 17:30, 20 January 2014
Short description: | p3@JMJD6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_JMJD6_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000344991_5end |
EntrezGene: | JMJD6 |
HGNC: | 19355 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.50e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.50e-20 | 42 |
myeloid leukocyte | 2.93e-18 | 72 |
defensive cell | 5.00e-16 | 48 |
phagocyte | 5.00e-16 | 48 |
granulocyte monocyte progenitor cell | 4.49e-15 | 67 |
myeloid lineage restricted progenitor cell | 3.20e-14 | 66 |
macrophage dendritic cell progenitor | 1.05e-13 | 61 |
monopoietic cell | 9.15e-13 | 59 |
monocyte | 9.15e-13 | 59 |
monoblast | 9.15e-13 | 59 |
promonocyte | 9.15e-13 | 59 |
mesenchymal cell | 1.90e-12 | 354 |
leukocyte | 3.54e-11 | 136 |
multi fate stem cell | 4.77e-11 | 427 |
connective tissue cell | 4.77e-11 | 361 |
motile cell | 2.07e-10 | 386 |
somatic stem cell | 2.74e-10 | 433 |
myeloid cell | 2.33e-09 | 108 |
common myeloid progenitor | 2.33e-09 | 108 |
stem cell | 3.22e-09 | 441 |
hematopoietic lineage restricted progenitor cell | 1.69e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.22e-13 | 76 |
bone element | 4.13e-13 | 82 |
lateral plate mesoderm | 4.35e-11 | 203 |
skeletal element | 1.78e-10 | 90 |
connective tissue | 1.81e-10 | 371 |
immune system | 2.11e-10 | 93 |
hematopoietic system | 5.65e-10 | 98 |
blood island | 5.65e-10 | 98 |
skeletal system | 9.58e-10 | 100 |
musculoskeletal system | 5.72e-09 | 167 |
mesoderm | 1.57e-08 | 315 |
mesoderm-derived structure | 1.57e-08 | 315 |
presumptive mesoderm | 1.57e-08 | 315 |
hemolymphoid system | 2.08e-08 | 108 |