FFCP PHASE1:Hg19::chr17:48275829..48275874,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=188bp_to_ENST00000495677_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_17_at_COL1A1_5end | |||
|id=chr17:48275829..48275874,- | |||
|ontology_enrichment_celltype=CL:0000055!1.02e-39!180;CL:0000057!4.31e-24!75;CL:0000680!3.44e-18!57;CL:0000056!3.44e-18!57;CL:0000355!3.44e-18!57;CL:0000183!3.80e-18!59;CL:0000187!2.60e-17!54;CL:0000393!1.25e-14!60;CL:0000211!1.25e-14!60;CL:0000192!1.72e-13!42;CL:0000514!1.72e-13!42;CL:0000048!4.87e-11!430;CL:0000723!1.61e-10!436;CL:0000359!1.05e-09!32;CL:0000034!1.77e-09!444;CL:0000222!3.21e-08!119;CL:0002334!5.00e-08!12;CL:0002620!1.26e-07!23;CL:0002371!2.37e-07!591;CL:0000144!5.38e-07!625;CL:0002494!6.11e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000187;9.75e-12;55!CL:0000192;1.06e-11;43!CL:0000134;4.65e-11;55!CL:0000359;6.67e-11;32!CL:0000723;3.86e-10;61!CL:0002320;5.71e-10;188!CL:0000048;6.11e-10;58!CL:0000057;2.83e-09;73!CL:0002334;3.36e-09;12!CL:0000393;4.33e-09;61!CL:0000211;4.33e-09;61!CL:0002494;5.42e-08;16!CL:0002620;7.46e-08;23!CL:0000034;1.89e-07;69!CL:0000499;4.03e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.52e-25,76;CL:0000680,7.42e-22,58;CL:0000056,7.42e-22,58;CL:0000355,7.42e-22,58;CL:0000187,8.33e-21,55;CL:0000048,9.68e-19,427;CL:0000723,1.11e-17,433;CL:0000393,5.22e-17,61;CL:0000211,5.22e-17,61;CL:0000034,2.51e-16,441;CL:0000192,3.06e-16,43;CL:0000514,3.06e-16,43;CL:0000359,2.14e-11,32;CL:0002334,2.89e-09,12;CL:0000222,8.42e-09,121;CL:0002320,3.42e-08,361;CL:0002494,5.65e-08,16;CL:0002620,9.39e-08,23;CL:0000499,3.45e-07,28;CL:0000134,6.70e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000355;1.00e-11;58!CL:0000514;1.06e-11;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.68e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.46e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.55e-21!83;UBERON:0002329!5.55e-21!83;UBERON:0003077!5.55e-21!83;UBERON:0003059!5.55e-21!83;UBERON:0007282!5.55e-21!83;UBERON:0009618!5.55e-21!83;UBERON:0007285!5.55e-21!83;UBERON:0004290!4.75e-19!70;UBERON:0001134!1.10e-18!61;UBERON:0002036!1.10e-18!61;UBERON:0003082!1.10e-18!61;UBERON:0002385!1.17e-18!63;UBERON:0001015!1.17e-18!63;UBERON:0000383!1.17e-18!63;UBERON:0000486!3.32e-15!82;UBERON:0005256!4.42e-15!143;UBERON:0002100!5.82e-10!216;UBERON:0004872!6.80e-09!84;UBERON:0003102!7.47e-09!95;UBERON:0000475!1.12e-08!365;UBERON:0002199!6.79e-08!45;UBERON:0002416!6.79e-08!45;UBERON:0001013!1.67e-07!14;UBERON:0003104!4.75e-07!238;UBERON:0009142!4.75e-07!238;UBERON:0000490!4.85e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.71e-09;198!UBERON:0002385;3.57e-08;31!UBERON:0001015;3.57e-08;31!UBERON:0000383;3.57e-08;31!UBERON:0001013;8.61e-08;14!UBERON:0003688;6.10e-07;6!UBERON:0002358;6.10e-07;6!UBERON:0003684;6.10e-07;6!UBERON:0001178;6.10e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.27e-22,73;UBERON:0002329,4.48e-22,71;UBERON:0003059,4.48e-22,71;UBERON:0007282,4.48e-22,71;UBERON:0004290,4.48e-22,71;UBERON:0009618,4.48e-22,71;UBERON:0001134,4.89e-22,62;UBERON:0002036,4.89e-22,62;UBERON:0003082,4.89e-22,62;UBERON:0003077,1.81e-21,72;UBERON:0007285,1.81e-21,72;UBERON:0007503,3.76e-21,78;UBERON:0002385,1.00e-20,64;UBERON:0001015,1.00e-20,64;UBERON:0000383,1.00e-20,64;UBERON:0000486,1.25e-17,83;UBERON:0005256,1.28e-14,122;UBERON:0003104,3.98e-13,160;UBERON:0009142,3.98e-13,160;UBERON:0000926,2.70e-09,315;UBERON:0004120,2.70e-09,315;UBERON:0006603,2.70e-09,315;UBERON:0004872,5.43e-09,83;UBERON:0000490,1.12e-08,148;UBERON:0002384,1.37e-08,371;UBERON:0001013,8.70e-08,14;UBERON:0002199,2.01e-07,46;UBERON:0002416,2.01e-07,46;UBERON:0002100,3.57e-07,199;UBERON:0001637,5.11e-07,42;UBERON:0003509,5.11e-07,42;UBERON:0004572,5.11e-07,42;UBERON:0003688,6.13e-07,6;UBERON:0002358,6.13e-07,6;UBERON:0003684,6.13e-07,6;UBERON:0001178,6.13e-07,6 | |||
|phase1_expression=33.9738569235941,41.5355016348507,44.2596828861349,49.0359161930339,56.3170978978383,32.2765253917136,15.1979926900986,1.89515962028049,0.783556884599516,0.491467873003018,0,0.873765488520689,9.75937819445278,1.73272894144065,6.2965501388304,2.01697543935533,1.80808358407193,3.65155045193687,2.92759679274304,3.32426856807327,9.58803248847989,8.77673220138646,0.572471974262113,1.23186982565596,1.63205431473244,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,5.36560687762909,3.06870148424473,8.67453965722959,27.5735850849739,11.1531819599834,7.95285947051099,29.6847270884608,1.51255707462509,10.4212816807405,6.23626978421195,0.196468613246569,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,56.157830541571,13.9293562831038,3.70745706277013,40.1571269048339,13.4773985235376,10.0921968025615,25.6197589751292,18.500066131287,3.42332138939743,7.40908696383284,4.08654757783647,9.08144565869588,17.86145365888,1.40592859100278,0,0,0.747243402759005,1.29177948508141,2.26622122115384,1.26405726032024,0.408308342509787,1.47401180774122,2.58314452939414,59.4001428641027,91.488763833066,11.8320977051943,16.5282172617735,0.673344455816265,3.25308151667107,0.554128230968366,8.77955241761676,57.9261934060147,47.4752266144846,2.60894021268048,9.32826105582082,18.7930502160339,19.7096668078393,18.3055568611485,11.4388307454667,11.3361837620077,12.6559462305481,15.189869901714,12.0821886399886,8.07788077581166,16.2007821610447,16.1646056818812,14.9104028856978,7.55640736707302,3.05209066158878,0,0.272746120590835,0,0,0,0.232387885739037,0,0,0,7.8224766164908,9.64861407289328,8.28809528114883,2.3218396401599,1.44375896333917,0,0,0,0,0,0,0,0.196221465125346,0,0.738155454624648,11.2193419042757,12.347220339942,29.4017422771084,0,0,0,0,0.122988438543114,0.857839051492628,0.219500570817251,0,0,0,0.651616610620649,5.19967392639789,0,0.231860809950154,2.46558257895225,0.144366447761074,0,0,0,0,0,0,0,0,1.00789276919316,0,0,0,0,0,0,0,0.144119953416961,0.37872730027914,0.063497894292169,0,0,0,0.308482478109971,0,0,2.5790149399433,6.5394010324992,1.9067954313447,11.3759109866844,17.8828222925941,7.607724773004,11.4353390131494,10.4007436911366,1.54324424557285,2.83698264046557,3.72991050622539,7.43485567022367,48.2933228798384,7.40916303102692,3.25736184293735,10.6617584622764,2.37585561880029,0.904318131178758,0.871533458600294,1.49959486773086,0,0,0,21.5662369942424,50.5392517670101,4.27910715122155,5.35690834670043,8.01357657946495,1.79060963239896,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,1.8403723757871,3.00102312635806,2.17012018959788,60.3115498439341,49.603258885611,35.0099361375335,13.9398283841329,70.7223334360139,138.718577474151,9.31257641632544,3.98535359121262,17.6994401800035,3.90976265106373,11.9438706052272,27.4514739048685,0,0,0,1.21251028578504,14.9791895559447,10.8860505598685,51.6064240263056,16.1135071952466,129.945623722513,66.8886359114759,20.9799972117348,74.3145115683467,35.6203359467978,4.31787142647436,10.1210183428482,1.97105174433142,8.82732529612156,7.66988497835731,0,1.40354529212299,0,10.3333003348146,12.7463817604702,12.7190682510641,0.451199612907412,0,0.784349769176855,0,0.211103257785751,0,0,1.0795795805107,1.54227252690289,1.62567862526312,4.51520796469368,0,0,0.223874754722178,0,0,0,0.656029291399411,0.325378394664303,0.309123034943167,2.01452822600355,0.990113999047056,0.574265537996172,2.60024098414608,12.8547143875328,2.70678011217942,4.46740989632469,6.60065801322357,4.82428003695857,4.72649077420404,14.6466860853371,4.09087811597284,14.5122218104182,0.495854746082934,1.34533047155574,0,0.50578890427775,2.78907329578371,26.4442371337738,2.0911118104818,2.15623506123262,2.66153015158511,0,3.52116016297448,3.86437194203376,4.46590043231601,5.06207079549961,16.7754570652966,4.35026245229268,4.2793898803392,4.77304871888905,18.8387673647815,5.93579110024939,34.5916657467429,14.8443626955565,2.22400729730648,4.75530963519025,5.05510147486777,5.36397112998549,2.43713489631284,10.5650146756755,5.05049672209547,31.2506004617705,42.9430843156923,4.41092274836899,3.3171948762061,2.19225442626881,4.05142873986681,7.21484227251296,4.46402829317949,5.26699946769575,8.45086807596724,2.29458163526482,3.92996164052485,7.133421029625,2.48332744849418,7.38876723541824,8.56166721695745,1.89736586882858,2.44954304171488,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0.284136146806413,0.95497793895076,0.296964680832639,0,0,0,0.111308705022906,0,0,0.398495976502139,0.552567831062295,0,0.306806047506464,0,34.8364338181224,0,0,0,0.986434056369336,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0,0,0,0,0.219385397153973,0,0,6.30992119731136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| |||
|short_description=p17@COL1A1 | |||
}} |
Revision as of 16:14, 20 January 2014
Short description: | p17@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 188bp_to_ENST00000495677_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.52e-25 | 76 |
muscle precursor cell | 7.42e-22 | 58 |
myoblast | 7.42e-22 | 58 |
multi-potent skeletal muscle stem cell | 7.42e-22 | 58 |
muscle cell | 8.33e-21 | 55 |
multi fate stem cell | 9.68e-19 | 427 |
somatic stem cell | 1.11e-17 | 433 |
electrically responsive cell | 5.22e-17 | 61 |
electrically active cell | 5.22e-17 | 61 |
stem cell | 2.51e-16 | 441 |
smooth muscle cell | 3.06e-16 | 43 |
smooth muscle myoblast | 3.06e-16 | 43 |
vascular associated smooth muscle cell | 2.14e-11 | 32 |
preadipocyte | 2.89e-09 | 12 |
mesodermal cell | 8.42e-09 | 121 |
connective tissue cell | 3.42e-08 | 361 |
cardiocyte | 5.65e-08 | 16 |
skin fibroblast | 9.39e-08 | 23 |
stromal cell | 3.45e-07 | 28 |
mesenchymal cell | 6.70e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.46e-07 | 14 |