FFCP PHASE1:Hg19::chr17:46048376..46048431,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80279 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18673 | |||
|TSSclassifier=strong | |||
|UniProt=Q96JB5 | |||
|association_with_transcript=0bp_to_ENST00000338399,NM_176096,uc002imq.1,uc002imr.2,uc002ims.2,uc002imu.2_5end | |||
|description=CAGE_peak_3_at_CDK5RAP3_5end | |||
|id=chr17:46048376..46048431,+ | |||
|ontology_enrichment_celltype=CL:0000542!2.30e-16!53;CL:0000051!2.30e-16!53;CL:0000838!2.86e-16!52;CL:0000791!2.88e-12!18;CL:0000789!2.88e-12!18;CL:0002420!2.88e-12!18;CL:0002419!2.88e-12!18;CL:0000790!2.88e-12!18;CL:0000084!1.85e-10!25;CL:0000827!1.85e-10!25;CL:0000625!5.43e-08!11;CL:0000236!3.59e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.12e-12;18!CL:0000789;1.12e-12;18!CL:0002419;1.12e-12;18!CL:0000084;3.07e-10;25!CL:0000542;3.37e-10;53!CL:0000625;3.11e-08;11!CL:0000236;2.14e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,2.12e-16,53;CL:0000051,2.12e-16,53;CL:0000838,2.64e-16,52;CL:0000791,2.73e-12,18;CL:0000789,2.73e-12,18;CL:0002420,2.73e-12,18;CL:0002419,2.73e-12,18;CL:0000790,2.73e-12,18;CL:0000084,1.75e-10,25;CL:0000827,1.75e-10,25;CL:0000625,5.26e-08,11;CL:0000236,3.49e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;1.12e-12;18!CL:0000051;3.37e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.12e-15!94;UBERON:0001016!1.12e-15!94;UBERON:0005743!1.97e-14!86;UBERON:0001017!5.98e-14!82;UBERON:0001049!6.69e-14!57;UBERON:0005068!6.69e-14!57;UBERON:0006241!6.69e-14!57;UBERON:0007135!6.69e-14!57;UBERON:0007023!9.63e-14!115;UBERON:0002780!1.16e-12!41;UBERON:0001890!1.16e-12!41;UBERON:0006240!1.16e-12!41;UBERON:0002346!1.21e-12!90;UBERON:0000955!6.93e-12!69;UBERON:0006238!6.93e-12!69;UBERON:0003080!1.01e-11!42;UBERON:0002616!1.15e-11!59;UBERON:0003075!1.92e-11!86;UBERON:0007284!1.92e-11!86;UBERON:0002020!2.39e-11!34;UBERON:0003528!2.39e-11!34;UBERON:0001893!3.64e-11!34;UBERON:0002791!4.51e-11!33;UBERON:0003056!5.11e-11!61;UBERON:0001869!1.15e-10!32;UBERON:0000153!1.59e-08!129;UBERON:0007811!1.59e-08!129;UBERON:0000956!8.48e-08!25;UBERON:0000203!8.48e-08!25;UBERON:0000924!1.07e-07!173;UBERON:0006601!1.07e-07!173;UBERON:0000033!6.89e-07!123;UBERON:0004121!6.96e-07!169;UBERON:0002619!9.99e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;6.21e-10;34!UBERON:0002020;6.21e-10;34!UBERON:0002791;6.52e-10;32!UBERON:0001869;1.14e-09;32!UBERON:0002780;1.50e-09;41!UBERON:0001890;1.50e-09;41!UBERON:0001893;1.80e-09;34!UBERON:0000073;4.37e-09;53!UBERON:0002616;4.37e-09;53!UBERON:0000956;1.47e-07;25!UBERON:0000203;1.47e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.50e-16,89;UBERON:0002346,8.48e-16,86;UBERON:0000073,3.80e-15,53;UBERON:0002616,3.80e-15,53;UBERON:0001049,8.36e-15,56;UBERON:0005068,8.36e-15,56;UBERON:0006241,8.36e-15,56;UBERON:0007135,8.36e-15,56;UBERON:0001017,1.09e-14,81;UBERON:0003075,1.73e-14,82;UBERON:0007284,1.73e-14,82;UBERON:0007023,1.66e-13,114;UBERON:0002780,1.10e-12,41;UBERON:0001890,1.10e-12,41;UBERON:0003080,1.10e-12,41;UBERON:0006240,1.10e-12,41;UBERON:0000955,1.29e-12,68;UBERON:0006238,1.29e-12,68;UBERON:0003056,2.72e-12,61;UBERON:0003528,2.27e-11,34;UBERON:0002020,2.27e-11,34;UBERON:0001893,3.47e-11,34;UBERON:0002791,6.33e-11,32;UBERON:0001869,1.10e-10,32;UBERON:0010371,1.03e-09,104;UBERON:0004121,8.54e-09,171;UBERON:0000924,8.54e-09,171;UBERON:0006601,8.54e-09,171;UBERON:0000956,8.22e-08,25;UBERON:0000203,8.22e-08,25;UBERON:0002619,9.74e-07,22 | |||
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| |||
|short_description=p3@CDK5RAP3 | |||
}} |
Revision as of 15:57, 20 January 2014
Short description: | p3@CDK5RAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDK5RAP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000338399, NM_176096, uc002imq.1, uc002imr.2, uc002ims.2, uc002imu.2_5end |
EntrezGene: | CDK5RAP3 |
HGNC: | 18673 |
UniProt: | Q96JB5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 2.12e-16 | 53 |
common lymphoid progenitor | 2.12e-16 | 53 |
lymphoid lineage restricted progenitor cell | 2.64e-16 | 52 |
mature alpha-beta T cell | 2.73e-12 | 18 |
alpha-beta T cell | 2.73e-12 | 18 |
immature T cell | 2.73e-12 | 18 |
mature T cell | 2.73e-12 | 18 |
immature alpha-beta T cell | 2.73e-12 | 18 |
T cell | 1.75e-10 | 25 |
pro-T cell | 1.75e-10 | 25 |
CD8-positive, alpha-beta T cell | 5.26e-08 | 11 |
B cell | 3.49e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.50e-16 | 89 |
neurectoderm | 8.48e-16 | 86 |
regional part of nervous system | 3.80e-15 | 53 |
regional part of brain | 3.80e-15 | 53 |
neural tube | 8.36e-15 | 56 |
neural rod | 8.36e-15 | 56 |
future spinal cord | 8.36e-15 | 56 |
neural keel | 8.36e-15 | 56 |
central nervous system | 1.09e-14 | 81 |
neural plate | 1.73e-14 | 82 |
presumptive neural plate | 1.73e-14 | 82 |
adult organism | 1.66e-13 | 114 |
regional part of forebrain | 1.10e-12 | 41 |
forebrain | 1.10e-12 | 41 |
anterior neural tube | 1.10e-12 | 41 |
future forebrain | 1.10e-12 | 41 |
brain | 1.29e-12 | 68 |
future brain | 1.29e-12 | 68 |
pre-chordal neural plate | 2.72e-12 | 61 |
brain grey matter | 2.27e-11 | 34 |
gray matter | 2.27e-11 | 34 |
telencephalon | 3.47e-11 | 34 |
regional part of telencephalon | 6.33e-11 | 32 |
cerebral hemisphere | 1.10e-10 | 32 |
ecto-epithelium | 1.03e-09 | 104 |
ectoderm-derived structure | 8.54e-09 | 171 |
ectoderm | 8.54e-09 | 171 |
presumptive ectoderm | 8.54e-09 | 171 |
cerebral cortex | 8.22e-08 | 25 |
pallium | 8.22e-08 | 25 |
regional part of cerebral cortex | 9.74e-07 | 22 |