FFCP PHASE1:Hg19::chr17:29298033..29298090,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84282 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21158 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IUD6,F5GX60,B3KV69 | |||
|association_with_transcript=0bp_to_ENST00000324689,ENST00000328381,ENST00000535306,ENST00000535605_5end | |||
|description=CAGE_peak_1_at_RNF135_5end | |||
|id=chr17:29298033..29298090,+ | |||
|ontology_enrichment_celltype=CL:0002194!1.47e-11!63;CL:0000576!1.47e-11!63;CL:0000040!1.47e-11!63;CL:0000559!1.47e-11!63;CL:0002009!1.69e-10!65;CL:0000557!3.88e-10!71;CL:0000766!4.53e-10!76;CL:0000839!2.03e-09!70;CL:0002057!9.65e-09!42;CL:0000860!6.19e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.38e-07;39!CL:0000234;4.38e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,1.55e-12,59;CL:0000576,1.55e-12,59;CL:0000040,1.55e-12,59;CL:0000559,1.55e-12,59;CL:0000473,6.65e-12,48;CL:0000234,6.65e-12,48;CL:0002009,2.28e-11,61;CL:0000557,6.80e-11,67;CL:0000766,8.87e-11,72;CL:0000839,3.90e-10,66;CL:0000860,9.64e-09,42;CL:0002057,9.64e-09,42 | |||
|ontology_enrichment_development_v019=CL:0002057;7.66e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.69e-11!102;UBERON:0003061!1.69e-11!102;UBERON:0002193!9.89e-11!112;UBERON:0002371!1.62e-10!80;UBERON:0001474!3.69e-09!86;UBERON:0000926!4.57e-09!448;UBERON:0004120!4.57e-09!448;UBERON:0006603!4.57e-09!448;UBERON:0003081!6.60e-09!216;UBERON:0004765!6.01e-08!101;UBERON:0001434!6.01e-08!101;UBERON:0002204!2.77e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.08e-12,98;UBERON:0003061,4.08e-12,98;UBERON:0002193,2.89e-11,108;UBERON:0002371,3.19e-11,76;UBERON:0000926,3.27e-10,315;UBERON:0004120,3.27e-10,315;UBERON:0006603,3.27e-10,315;UBERON:0003081,3.51e-10,203;UBERON:0004765,8.77e-10,90;UBERON:0001474,9.66e-10,82;UBERON:0002405,2.31e-09,93;UBERON:0001434,8.04e-09,100;UBERON:0002204,7.29e-08,167 | |||
|phase1_expression=23.2548325466312,20.3395497696434,19.451707765244,24.0175916047513,23.6889380046463,23.55314015071,27.8629865985142,17.6881564559513,28.4692334737824,8.10921990454979,15.3516256953934,8.08233076881637,15.0347177590219,12.9954670608049,13.9186897805725,12.101852636132,16.2727522566474,15.3365118981348,13.6621183661342,11.9427426334484,15.9120539170517,11.2843699732112,10.5907315238491,7.93871665422728,7.53255837568817,8.25264782077874,7.14275128214528,6.29686250509434,9.8341069212226,8.44424675813868,19.0423831678773,13.7913183671839,12.6506485886865,31.7988448743437,6.89458085164684,0,19.0840285567651,18.8358438900838,21.4582558793052,21.2670653301535,43.4396020025453,38.5433462562586,45.590875471251,33.8777896356386,23.0504325650174,34.6895207498577,25.1023359858139,13.1573724166984,12.6979612066992,14.0969272237854,15.8819638048042,12.0605937243178,24.8216890130365,16.1371170895957,21.6682378550947,23.9067771219108,11.7349644524874,10.7867272533641,14.9981107261742,6.73950956859797,16.6227652707751,24.0791449136303,17.9517291859469,21.3112375266347,15.0908804086864,9.07816359505824,11.8336227309159,18.8436498942557,10.9511412868242,14.3344637505377,19.9781835869012,6.2607198117886,9.81033401066742,29.153229511048,37.8435653937778,31.8681141172731,38.6410491143943,43.2509451383538,28.6091544320803,38.1917076613273,41.5735855346098,30.5049136786939,12.3197371122926,15.2918811153397,18.6796943311347,15.7890182349608,16.4162354684765,13.7940585589076,20.4923910563307,17.1729675816366,13.0918982895173,9.98303221930596,8.79228424688026,9.25199300053181,7.28661131875997,15.5396610017295,1.37696839079683,1.57204305099666,3.08402248499264,8.3593247695339,3.2592226663359,6.15482147455153,1.94826728407911,10.918224774747,7.65975359434577,8.19675409959398,4.87446954777028,13.5776798909216,12.7458160608681,9.86627427622057,10.5013006758622,11.302320343667,2.22429844743091,1.60524496853828,1.04535523804977,9.06474741580529,6.51474839123266,4.81078423675682,3.28925599625354,2.86708872891687,3.90650072313851,4.75226022224187,4.9689789295665,4.60751800155906,7.49584359314075,3.55165878066025,5.74789597844733,3.83052812126992,3.4767225451856,1.73789284659359,12.1903433156981,14.0847180537764,12.4026684988224,21.686349143074,15.5414752297126,20.7130522113978,4.7717156823066,14.1124112387764,9.45348171640679,10.6430110782031,11.5941917114926,18.4025601074286,32.7865759463288,25.5841265521256,22.0692227685185,19.6766603148172,20.741441840943,6.20075623193889,5.71994910780128,2.22874500797739,7.55297147993479,7.74211135595512,13.5384795626962,14.1326985481002,18.4579751932359,8.80377734208216,11.076733226451,9.30300333009584,9.24992282985447,9.37217715741077,8.05658634218294,3.80136052859256,4.39311703586705,9.92690316933846,13.7724131139899,11.2517657637941,15.2679973385795,13.0629317360654,7.66583187329416,9.49265659568129,11.9081133554765,9.22462922052443,11.6334079244498,19.1881382942715,21.866765874594,9.3706578631789,9.26864265692532,13.1944845544454,16.6694139633228,8.97084160227691,9.60740961567345,11.1000396787722,12.1372303805909,15.8958593042232,13.2404141521902,13.168096205109,17.2852777344,18.0427502512023,14.9836836878554,13.1208518955223,17.1865982634571,11.508580867089,15.3779297149725,11.5169661495844,12.0450961040387,10.3180826541885,19.9418757669227,16.6320400019487,24.4794259985771,18.2032272387605,41.6798522253418,6.90178067211671,11.5109038282207,8.31192346452549,13.608306247306,11.3400484445637,19.380709598951,8.50741373700158,7.35497506324334,13.4541154955697,13.563641674212,9.00273288253207,11.6449358039436,8.75977836155139,17.3088676388379,6.75105328965065,10.5231965574095,5.80597680761463,14.9120835800525,16.1646056818812,7.10019185033229,8.56392834934942,8.47802961552438,12.5619554556143,10.9098448236334,13.4798159832832,8.90408054746046,10.7349112340403,11.2708124583433,8.50020651126038,9.84051318414951,14.2341170039574,9.38697193978896,12.2215778256648,12.4321429217232,12.5379340568634,19.4907460050788,14.3151228048211,13.31819051617,15.1836948826594,14.2279224824788,13.2906460896368,16.1344020995546,15.1011065139384,11.7732879075208,10.3881732375525,22.1446636387394,21.0362660705169,10.7009242946164,17.641045366265,2.53510069643662,1.96565443335525,8.27105869353966,7.06340959063441,0,5.66173773985134,16.5722930967025,23.6043681841001,13.5714112755702,12.2216747609259,11.077482380551,23.9185000614303,5.77325368101093,5.56465943880369,7.39674773685676,4.76409277611544,7.40776820122577,3.80508304469197,14.223679163267,7.72637545885385,31.5157767791869,33.462609914911,36.7118970853159,18.7467667973554,9.74296343553385,7.08875486211932,13.2546613600215,16.8567684338098,12.2682457332868,0.492663237895943,12.3267807618516,13.2689993946094,10.9531164596891,17.5476982462668,9.46118624953319,19.0994212779139,23.4434894420094,17.1072446022705,7.81488944545259,13.5154376029763,13.1480159010066,11.4373706032268,16.5664826156646,7.7738582970207,10.8588241236533,42.9187735022259,10.988935783228,13.2969058292435,10.4007436911366,16.204064578515,9.92943924162948,20.2480856052236,12.1531294609425,20.6196210048748,17.2880470723961,9.44634934451832,15.2818537959295,15.8390374586686,11.1532569512047,8.71533458600294,11.3969209947545,46.2170366436524,43.696366954595,33.7334303172851,12.7001173410539,13.7834323000937,7.13184525203592,9.70034754672781,11.0957214177207,13.2505112797523,15.9160904470809,6.89607660706745,3.66566877261179,5.64709359630893,3.81141936333695,2.60279707715243,1.54657762555539,2.34522771468088,2.55175500661265,14.2311334549965,11.966458368161,21.5496066986738,11.41030872988,21.5073324055661,19.2598166826812,18.5094066762418,10.8841683166269,15.4548366733256,16.3997980989798,14.1444666872028,25.0148254461583,18.6251528326509,7.3064815838898,15.6713793260448,9.81784843489336,25.649951627619,31.2260515667879,12.6128495934961,19.4142780736755,13.3409447254305,11.8219752864041,11.6504807657348,14.5147340798247,21.5853792802336,8.5938705041315,20.7688469880474,23.9620209108161,20.4682899626681,17.8547852469404,16.325987308949,12.4909851980151,17.7561725313127,13.9616165223476,9.8658341544888,20.5692369874128,0,11.228362336984,28.2688636033202,9.18515585316854,9.28664956834257,15.0793077203338,17.1455852904816,8.08661039596355,10.1965469992991,10.2297457257282,6.64975262025117,22.7466768141793,13.6074964221213,8.85255256018771,21.5918153766405,15.1730005024558,18.5625216326296,10.1950509218015,6.64860807142979,11.8653620002755,1.97333888981341,2.87578996127391,8.20640400372445,13.1205858279882,5.53143270929315,15.6622337704538,5.40259842428226,4.20798449594999,6.89118645595407,14.3013254128035,17.6752322828576,16.627363546245,11.3995976664837,13.6618270506255,12.9566378135459,13.9646318328756,15.5167862488225,9.289702388355,11.4851325984291,11.5699440752685,18.06586633232,13.3993348119313,20.6361872945322,12.5508298310267,10.7036197922418,13.2437081330514,12.9374103673957,12.7753447276085,11.3091288969759,10.0075078316117,13.5968642404892,8.55964249527235,8.85862389212432,10.2940304718865,18.1687431831047,11.1264136888819,18.4557883797043,14.9140241637854,10.7923474549989,13.1777774273306,10.7209286134575,14.1527737101321,14.2659289055707,11.7952367746915,9.75267478179181,26.56477036981,19.017026416216,10.9199929126389,14.1405431953713,18.0812986592388,15.9895949628376,17.2494133562717,17.5380354101505,12.1542862196004,12.462000288886,10.7542499790233,8.675057946793,13.2396933190153,7.88762437122283,9.62840601928587,7.133421029625,8.15950447362375,22.1663017062547,26.3435914367921,7.96893664908002,19.2464096134741,13.9522063451992,16.0872546128589,20.6892871236513,14.7805767219543,10.3321289441095,13.47771805341,22.6149378303705,11.486170010348,21.8202471969833,22.9391162142713,29.6216537330565,19.0585420366231,19.7453891081373,24.6419858253233,16.2009431171434,22.2075049362396,0.747768497892312,13.474717973687,6.86112604746889,11.1481905075431,14.4269212976445,15.295496319909,0,11.7751829145362,22.2146229353545,4.86849240264931,25.9697552219644,26.3949347426651,32.6375591017465,6.42387572669395,10.0253790836027,21.8386393364068,7.54763952987388,2.01799707191048,20.866465646826,14.7707298244979,8.60274140063682,9.17072042358905,10.1777976444264,21.6880785896265,16.9827766076098,7.38524393686274,4.32729085561573,18.3189582398801,22.5579208140559,28.6325026824576,19.4855878431619,13.471017914196,17.0508377944542,20.4578025700617,15.2796470232122,15.4421634032972,13.8222315944654,3.97659059106519,7.17414023693615,12.5778836675884,15.8211719257689,9.50064336575971,17.7330709543452,16.8533188474,2.26739473068848,2.65898574505602,11.5699717133405,13.6857418571195,11.2335438934159,19.692329214317,0.511572370226872,13.7114333835338,23.948309234694,6.66821940867821,8.72399471485697,4.73117300625441,1.99613798001194,5.98983850496036,17.2296199992506,30.4499821682613,12.1758989665485,17.7977555204936,22.220442086186,3.44743373241465,0,3.64612489359914,2.65722415744152,6.27101480852121,6.10326945268333,6.63475559587348,7.68423809279223,2.85201016300164,6.86312320169638,16.5914255691538,18.0833107483923,6.83652335082007,31.1261270923881,17.2334677266762,22.8159481036217,19.4590707436471,14.3808221640924,20.2553214887081,0,13.5003020499721,8.97543082260845,0,0,0,0,6.51639973819553,0.210998064528027,6.20284671004761,0,1.29833183845255,26.8720721391196,23.7950848513982,19.552964637876,6.22694370229306,9.39085935993422,6.16089502082187,7.68372915979718,19.2618635351709,3.98249557733077,18.6103884999979,5.86993856796269,19.1796499831933,18.150882531072,16.9387002468129,2.44858209304392,29.2553863679899,7.21552413189564,4.14752765588989,5.98188485436467,12.9086862791445,9.73192047062398,9.55779438183671,17.6457918538472,5.13096290148613,10.7607037767781,13.1309812535266,9.48945351726388,18.6957535018972,20.638323896594,10.1594147853539,11.4019334654449,10.2644321316512,18.3309241163113,19.3280917454386,11.2990370390266,17.4043244301374,8.34601369152557,3.8619585533086,13.4930454087014,10.5008054529509,16.2224276001908,9.19124204077799,13.6885896296401,13.2862451552462,0,12.9649318189335,17.3953549791606,11.0776196269894,19.9779182928213,22.3850091108393,15.7077255159936,12.7138259556668,9.00630433064684,8.48813349130357,34.4915787780825,15.0417904496985,13.407255068245,12.2884256559792,15.5829088327945,12.9217144423827,12.9791350324344,9.01374701086799,8.9268582976749,6.24806294126554,12.6104959239841,0,0,0,0,0,11.3462264968151,0.795229689809303,8.85322139725241,7.23389168092586,10.1779183081953,5.40072439437941,3.37460837327251,8.51182150013745,3.15897694621728,35.2206421979229,18.2041183861148,18.9361063167343,30.0960959080309,27.9688249359238,16.5047069694723,7.14695326373367,3.97255182219259,13.7305010333565,17.9189868578725,7.77799342081141,15.3496059251422,7.18381149374925,8.94808476167795,20.9577266796069,14.0506993484956,4.68967147769864,9.27548222385549,4.39562051629272,7.40502569759064,16.9375969505486,14.0963004463334,15.4841748223157,8.96064539068096,26.5112995422205,28.2814632432812,12.4495328095705,9.98699306723347,4.46838880439127,21.760712134779,20.055191521816,17.7680434522808,17.0493767969098,0,0.886068179966986,2.80660409274515,6.13435560461849,8.60113793535107,7.76503360757966,8.38301439708677,17.4319280019651,15.247609771377,10.4637891103737,25.1209493519571,22.5855186910245,4.21501415226193,1.59413131471908,15.6717543031218,16.3599316893057,10.5413113685497,10.7959713006801,14.8425062034019,14.2369795455446,14.1880842406093,14.0644759099812,11.1914784419602,9.6105847493262,7.16835452236661,13.4940933649081,8.53946262819427,7.87941794897625,9.83614343864581,12.0001364216699,10.9688054567969,9.90093551638868,4.47557806525128,7.27394636810238,9.98918180495143,11.6008439969623,9.55430132876678,7.60052752859992,16.8263895539569,13.4699795506368,7.57109389371906,12.5202889764747,21.4441591374926,19.8355661893561,19.7234155195677,19.9109327918497,14.1947288613751,25.7887931157342,35.8209678706728,18.4198601646114,7.77432242161877,15.2402090234023,21.4556899629402,16.6556987082165,27.9798576802271,23.3972166256584,5.11556213761404,8.3789932800937,13.552213711963,12.2674045691883,13.7596136515493,5.89854981008926,6.12805157740018,8.79944541761692,9.81563913186096,80.9410404405834,11.3503190713367,9.0211915623402,22.3807212351111,21.1506268411211,0,14.1250502929653,0,0,20.198171064529,0,10.4106041977562,0,14.6282001300573,22.5544590703585,2.40171224485641,10.9329542544112,10.4123462300088,3.78952428069111,4.25089728976755,7.02388979851466,3.48697819209284,3.02486035466062,2.97376185596137,2.42213468447777,2.85538840518309,16.2925212711703,14.7462154184675,10.0885729186923,7.27811696747131,21.7387794416285,11.0457588169616,8.35448132888354,16.0950102667411,18.9602764581309,10.9411961572633,23.571602503328,5.076929442813,23.6569737947272,2.4988906308806,3.12431239445539,4.13373593002368,3.80494861163441,1.64092442705466,13.7064441714296,13.3977018165109,0,7.15469594781734,8.57122937405259,10.0885116665647,1.21393120847326,5.69155478378244,17.917878772853,9.79488894224124,7.37398440580899,4.0781839786099,3.09132035745391,14.4196485878441,11.4568343948831,19.7802593983295,3.29942738823604,12.0517030224929,13.6973808076424,15.1149313853035,35.3536249036417,16.010745895571,0,16.5062824022738,8.86677188743155,13.6290932004143,21.1360487446298,25.9492085182804,20.7377898544228,12.4765934057881,18.6964561154293,19.8547233088837,16.0887079072553,10.3098090844823,13.6490809692301,7.64431151181946,9.50771170281235,3.92600934460972,14.7520689228546,3.23714418593947,8.21302454849976,17.397216470073,14.085618798715,0,0,15.6974519826391,0,2.96839395212659,0,17.4413597323955,13.5506927512454,0.470317296361523,13.4831576964648,0,5.30032861210352,8.02025280883132,8.0304588240846,10.8753353400203,20.8644297915275,17.532545528813,9.79423328064303,25.7117671592147,8.4694769211766,7.70317120216015,10.9550458236978,11.4682320851135,7.16697915757257,0,4.28346388202763,1.30905207102113,12.6966441723696,13.0198256358363,21.7222545456767,20.3334484198181,7.31765264043458,25.13108155165,7.09511605664047,18.0520228643308,14.4297398843403,9.55706955162387,9.52688649311025,12.5792639042277,7.23503151421682,1.65833887891756,5.48194878068045,15.3528466968706,15.4741880451431,5.10252387704448,6.95236800113608,6.61577989225619,24.4405087788153,17.5841954393651,12.6275713780238,11.6359322368996,18.0503502079095,16.4961072403156,13.6390746183865,9.11716608442914,15.4754651522687,17.3765054058246,16.3481867833988,11.7320471201727,16.9915607414184,17.089639489261,21.3042167739364,16.7057248680552,13.4638766767358 | |||
|short_description=p1@RNF135 | |||
}} |
Revision as of 14:34, 20 January 2014
Short description: | p1@RNF135 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF135_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000324689, ENST00000328381, ENST00000535306, ENST00000535605_5end |
EntrezGene: | RNF135 |
HGNC: | 21158 |
UniProt: | Q8IUD6F5GX60B3KV69 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 1.55e-12 | 59 |
monocyte | 1.55e-12 | 59 |
monoblast | 1.55e-12 | 59 |
promonocyte | 1.55e-12 | 59 |
defensive cell | 6.65e-12 | 48 |
phagocyte | 6.65e-12 | 48 |
macrophage dendritic cell progenitor | 2.28e-11 | 61 |
granulocyte monocyte progenitor cell | 6.80e-11 | 67 |
myeloid leukocyte | 8.87e-11 | 72 |
myeloid lineage restricted progenitor cell | 3.90e-10 | 66 |
classical monocyte | 9.64e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.64e-09 | 42 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.08e-12 | 98 |
blood island | 4.08e-12 | 98 |
hemolymphoid system | 2.89e-11 | 108 |
bone marrow | 3.19e-11 | 76 |
mesoderm | 3.27e-10 | 315 |
mesoderm-derived structure | 3.27e-10 | 315 |
presumptive mesoderm | 3.27e-10 | 315 |
lateral plate mesoderm | 3.51e-10 | 203 |
skeletal element | 8.77e-10 | 90 |
bone element | 9.66e-10 | 82 |
immune system | 2.31e-09 | 93 |
skeletal system | 8.04e-09 | 100 |
musculoskeletal system | 7.29e-08 | 167 |