FFCP PHASE1:Hg19::chr17:7461486..7461505,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8741 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11928 | |||
|TSSclassifier=strong | |||
|UniProt=Q2QBA2,B4DVT2,A8MYD5,O75888,Q541E1,B3KR02 | |||
|association_with_transcript=-103bp_to_ENST00000483039,NM_001198622,NM_001198623,NM_001198624,NM_003808,NM_172087,NM_172088,uc002ghj.2,uc002ghk.2,uc002ghl.2,uc010cmk.2,uc010vua.1_5end | |||
|description=CAGE_peak_5_at_TNFSF13_5end | |||
|id=chr17:7461486..7461505,+ | |||
|ontology_enrichment_celltype=CL:0000766!6.03e-30!76;CL:0000557!1.19e-29!71;CL:0000839!1.43e-28!70;CL:0002009!6.04e-28!65;CL:0002194!1.77e-27!63;CL:0000576!1.77e-27!63;CL:0000040!1.77e-27!63;CL:0000559!1.77e-27!63;CL:0000860!3.13e-25!45;CL:0000763!6.59e-25!112;CL:0000049!6.59e-25!112;CL:0002057!1.57e-24!42;CL:0002032!6.65e-11!165;CL:0000837!6.65e-11!165;CL:0000988!1.30e-10!182;CL:0000037!1.67e-10!172;CL:0000566!1.67e-10!172;CL:0002031!2.27e-10!124;CL:0000738!2.29e-10!140;CL:0002087!9.47e-09!119;CL:0000012!8.56e-08!682;CL:0000548!1.52e-07!679;CL:0000004!1.52e-07!679;CL:0000255!1.52e-07!679;CL:0000063!1.74e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000473;6.17e-27;39!CL:0000234;6.17e-27;39!CL:0000860;6.23e-27;33!CL:0002057;6.23e-27;33!CL:0000576;8.47e-20;48!CL:0000766;1.51e-18;69!CL:0000763;4.02e-11;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.21e-42,72;CL:0000473,7.74e-42,48;CL:0000234,7.74e-42,48;CL:0000557,1.34e-41,67;CL:0000839,8.47e-41,66;CL:0002194,1.72e-38,59;CL:0000576,1.72e-38,59;CL:0000040,1.72e-38,59;CL:0000559,1.72e-38,59;CL:0002009,2.83e-38,61;CL:0000763,2.03e-37,108;CL:0000049,2.03e-37,108;CL:0000860,3.52e-36,42;CL:0002057,3.52e-36,42;CL:0002032,3.08e-23,161;CL:0000837,3.08e-23,161;CL:0000037,1.06e-21,168;CL:0000988,1.13e-21,177;CL:0002031,4.06e-21,120;CL:0000738,4.87e-20,136;CL:0002087,6.86e-18,115;CL:0002393,1.76e-07,9;CL:0002397,1.76e-07,9;CL:0000235,5.79e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;3.28e-25;42!CL:0000049;9.62e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.02e-25!80;UBERON:0002390!1.91e-21!102;UBERON:0003061!1.91e-21!102;UBERON:0003081!3.23e-21!216;UBERON:0002193!6.40e-21!112;UBERON:0001474!7.56e-20!86;UBERON:0002405!2.45e-17!115;UBERON:0004765!1.35e-14!101;UBERON:0001434!1.35e-14!101;UBERON:0000926!1.51e-12!448;UBERON:0004120!1.51e-12!448;UBERON:0006603!1.51e-12!448;UBERON:0002204!3.66e-12!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.40e-34,76;UBERON:0001474,1.34e-29,82;UBERON:0002390,1.23e-28,98;UBERON:0003061,1.23e-28,98;UBERON:0002193,1.69e-26,108;UBERON:0002405,2.15e-26,93;UBERON:0004765,4.26e-26,90;UBERON:0001434,3.18e-21,100;UBERON:0003081,1.00e-18,203;UBERON:0002204,9.90e-14,167;UBERON:0000926,6.06e-10,315;UBERON:0004120,6.06e-10,315;UBERON:0006603,6.06e-10,315 | |||
|phase1_expression=0.181678379270557,0,0.563817616383885,1.0007329835313,2.23480547213644,0,0,0,0,1.22866968250754,4.88460817580699,1.09220686065086,0.263766978228454,0.37129905888014,0.662794751455832,0.672325146451775,1.20538905604795,2.19093027116212,1.95173119516203,0.369363174230364,0.408001382488506,0.313454721478088,0.286235987131057,0.273748850145768,0.251085279189606,4.43197753338117,3.69452652524756,5.03749000407547,2.36018566109342,0.767658796194425,4.95411594611443,0.919421224478927,1.8072355126695,1.10926203050036,0,0,0.880801318004542,3.32397245119126,2.4065333696417,0.651032612147555,0.671746422719773,0,0.515151135268373,3.05336301437086,4.53451132426571,2.91100873425379,3.95129362739664,5.34518254428373,3.09706370895104,1.43846196161075,4.09857130446561,1.41889337933151,2.41321976515633,2.5819387343353,5.41705946377367,4.32957380947991,3.82068610080984,1.79778787556068,1.83650335422542,2.24650318953266,3.19668562899521,2.96866170168044,6.58230070151385,4.26224750532694,2.03146467040009,2.8369261234557,2.4912889959823,2.51248665256743,2.60741459210101,3.04064382587163,3.63239701580021,6.2607198117886,2.84816148696796,4.85887158517466,1.91343869968539,2.93522103711726,5.27944566388527,4.50530678524519,3.69668849403284,5.13022938734247,3.9783335439818,3.65328307529268,0,1.09227722252426,0,0.426730222566507,1.20118796110804,0.574752439954483,0,0,1.70763890732835,1.76171156811282,0.764546456250458,0,1.12101712596307,1.84368859342554,0,0,0,0,0.651844533267181,0,0,0,0,0,0,0,0,0.164437904603676,0.276350017785848,0.579606171470105,0.14828656316206,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0.144824403882799,0,1.34140171940727,0.12786256184353,0,0,2.02785126545153,1.5905718941022,0.486634870302636,1.79616152611729,1.10864698731282,0.702678285545008,0.392937226493138,0.364295288292542,0.370784442784429,2.27183175558278,1.74129737299267,1.86141144726411,0.953962497221368,0.571994910780128,0,1.59009925893364,0,1.73570250803797,0.56530794192401,0.838998872419812,1.6507082516404,0.417989933073621,0.516833518338658,0.35576626268671,0.33472061276467,1.61131726843659,0.760272105718513,0.732186172644509,0.735326160691737,1.62028389576352,0.982297011124877,0.22452937262617,0.337834441449967,0,3.79706263827252,1.28241220751285,2.63560834872127,0,0.436094052142534,0.496971951695318,0.633152558322899,0.132409180813219,0,0.709336764396714,2.24271040056923,3.20246987189115,0,0,0.404132016209064,0.653847612453835,1.51357427644931,1.15235184896,0.468642863667593,0.312160076830321,0,0.448346041655403,0,0,0.140450806702248,0,0,0.206651562351531,0,0.247266929278557,0.910161361938026,2.15585442544872,0,0,0,0,0,0,0.453728732640084,0,0.640672166455702,0.211931901159562,0,0.515262646192195,0,0.37223371266318,0.168776332241266,0.68205903612839,0.252433774244115,0.644349290496095,1.13152239773168,0,0.302256294682921,0.339121184620975,0.773043412653187,0.272746120590835,1.72082757233402,0.487894824518382,0,0,0.10366105501537,0.504641701751257,0.36497735907583,1.56449532329816,1.92972281457866,0,0.928735856063958,0,1.30137480043828,1.34867752062481,0.482022059766964,1.32352767278873,1.08939722046203,1.42362371466658,0.808987848960987,0.98110732562673,1.15424147083917,1.4763109092493,0,0.8231480226628,1.47008711385542,0,0,0,0,0.491953754172454,1.20097467208968,0.878002283269004,2.24803506515239,1.00528972411631,0.277765335475589,0.977424915930974,0,2.88662684050547,0.811512834825538,0.469634776943287,0.721832238805369,0,0.190254152234598,0.790204397959275,0.858486162094873,1.96973604869918,6.55211942389866,2.97262324577457,0,0.335964256397719,0.141775097242386,0.447792613514241,0.290633938513962,0.766765358330422,2.95597942737566,3.25779205848936,3.10992173311158,2.88239906833923,1.8936365013957,0.507983154337352,3.4378958300245,1.17217447210047,0,0.205654985406647,0.600686115687835,0,1.79409734952577,2.61576041299968,0.4400297149257,0.517086863031111,3.57656445851882,0,1.06375246633948,1.04007436911366,0.257207374262142,0,0.266422179016099,1.00084595560703,0.542621605391443,0,0,1.06617584622764,0.791951872933429,1.50719688529793,0.871533458600294,0.699810938274399,3.64871341923571,2.51128545716063,6.32501818449095,0.718874566474748,2.29723871668228,0,0.289562613335158,1.02738161275192,0.895304816199478,0,0.197030760201927,0,0.385029108839245,0,0,0,0,0,2.24702107184155,0,0.414415513436035,0.613457458595699,2.00068208423871,0.542530047399471,1.66376689224646,1.42743191037729,2.05013139544115,1.05427273493442,1.20378439891088,0,0,0,0.184369168541703,0.695068915744663,1.37060810223918,1.02943027143257,0.413536052245775,1.2942852049117,0.533637789017222,0.909382714338778,0,0.907170879989041,0.496215615637554,0.61384789315225,0.561320188866147,0.384417447767103,1.02341449813341,0.482561763430822,0,0,0.177561725313127,0.410635780069046,0,0.813472649219715,0,1.40354529212299,0.736647911487171,0.229628896329213,0,0.524497659837696,4.96319574198153,1.92538342761037,3.13739907670742,2.92278449306521,1.16106791782163,0,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| |||
|short_description=p5@TNFSF13 | |||
}} |
Revision as of 13:34, 20 January 2014
Short description: | p5@TNFSF13 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TNFSF13_5end |
Coexpression cluster: | NA |
Association with transcript: | -103bp_to_ENST00000483039, NM_001198622, NM_001198623, NM_001198624, NM_003808, NM_172087, NM_172088, uc002ghj.2, uc002ghk.2, uc002ghl.2, uc010cmk.2, uc010vua.1_5end |
EntrezGene: | TNFSF13 |
HGNC: | 11928 |
UniProt: | Q2QBA2B4DVT2A8MYD5O75888Q541E1B3KR02 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.21e-42 | 72 |
defensive cell | 7.74e-42 | 48 |
phagocyte | 7.74e-42 | 48 |
granulocyte monocyte progenitor cell | 1.34e-41 | 67 |
myeloid lineage restricted progenitor cell | 8.47e-41 | 66 |
monopoietic cell | 1.72e-38 | 59 |
monocyte | 1.72e-38 | 59 |
monoblast | 1.72e-38 | 59 |
promonocyte | 1.72e-38 | 59 |
macrophage dendritic cell progenitor | 2.83e-38 | 61 |
myeloid cell | 2.03e-37 | 108 |
common myeloid progenitor | 2.03e-37 | 108 |
classical monocyte | 3.52e-36 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.52e-36 | 42 |
hematopoietic oligopotent progenitor cell | 3.08e-23 | 161 |
hematopoietic multipotent progenitor cell | 3.08e-23 | 161 |
hematopoietic stem cell | 1.06e-21 | 168 |
hematopoietic cell | 1.13e-21 | 177 |
hematopoietic lineage restricted progenitor cell | 4.06e-21 | 120 |
leukocyte | 4.87e-20 | 136 |
nongranular leukocyte | 6.86e-18 | 115 |
intermediate monocyte | 1.76e-07 | 9 |
CD14-positive, CD16-positive monocyte | 1.76e-07 | 9 |
macrophage | 5.79e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.40e-34 | 76 |
bone element | 1.34e-29 | 82 |
hematopoietic system | 1.23e-28 | 98 |
blood island | 1.23e-28 | 98 |
hemolymphoid system | 1.69e-26 | 108 |
immune system | 2.15e-26 | 93 |
skeletal element | 4.26e-26 | 90 |
skeletal system | 3.18e-21 | 100 |
lateral plate mesoderm | 1.00e-18 | 203 |
musculoskeletal system | 9.90e-14 | 167 |
mesoderm | 6.06e-10 | 315 |
mesoderm-derived structure | 6.06e-10 | 315 |
presumptive mesoderm | 6.06e-10 | 315 |