FFCP PHASE1:Hg19::chr16:87425914..87425959,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81631 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13352 | |||
|TSSclassifier=strong | |||
|UniProt=Q658J6,Q9GZQ8 | |||
|association_with_transcript=113bp_to_NM_022818,uc002fjx.2,uc010chs.2_5end | |||
|description=CAGE_peak_1_at_MAP1LC3B_5end | |||
|id=chr16:87425914..87425959,+ | |||
|ontology_enrichment_celltype=CL:0002057!8.12e-20!42;CL:0000860!9.85e-18!45;CL:0000766!7.53e-15!76;CL:0002009!8.07e-14!65;CL:0002194!1.15e-13!63;CL:0000576!1.15e-13!63;CL:0000040!1.15e-13!63;CL:0000559!1.15e-13!63;CL:0000839!9.34e-12!70;CL:0000557!1.26e-10!71;CL:0000359!2.44e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.34e-16;33!CL:0002057;1.34e-16;33!CL:0000473;3.70e-14;39!CL:0000234;3.70e-14;39!CL:0000576;1.23e-09;48!CL:0000766;7.08e-08;69!CL:0000359;4.45e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.62e-20,48;CL:0000234,4.62e-20,48;CL:0000860,8.12e-20,42;CL:0002057,8.12e-20,42;CL:0000766,1.04e-15,72;CL:0002009,9.34e-15,61;CL:0002194,1.27e-14,59;CL:0000576,1.27e-14,59;CL:0000040,1.27e-14,59;CL:0000559,1.27e-14,59;CL:0000839,1.70e-12,66;CL:0000557,2.74e-11,67;CL:0000359,2.44e-07,32;CL:0000192,7.17e-07,43;CL:0000514,7.17e-07,43 | |||
|ontology_enrichment_development_v019=CL:0002057;8.63e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.03e-17!216;UBERON:0002204!2.01e-12!167;UBERON:0001009!4.60e-11!113;UBERON:0004535!1.45e-10!110;UBERON:0002193!1.65e-09!112;UBERON:0002371!2.83e-09!80;UBERON:0002390!3.08e-09!102;UBERON:0003061!3.08e-09!102;UBERON:0000468!1.19e-08!659;UBERON:0004765!3.13e-08!101;UBERON:0001434!3.13e-08!101;UBERON:0000467!3.37e-08!625;UBERON:0000480!5.99e-08!626;UBERON:0000025!1.38e-07!194;UBERON:0001474!1.43e-07!86;UBERON:0000923!2.95e-07!604;UBERON:0005291!2.95e-07!604;UBERON:0006598!2.95e-07!604;UBERON:0002532!2.95e-07!604;UBERON:0001637!3.13e-07!42;UBERON:0003509!3.13e-07!42;UBERON:0004572!3.13e-07!42;UBERON:0002050!4.25e-07!605;UBERON:0005423!4.25e-07!605 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,3.55e-16,203;UBERON:0002204,2.28e-13,167;UBERON:0000926,6.95e-12,315;UBERON:0004120,6.95e-12,315;UBERON:0006603,6.95e-12,315;UBERON:0001009,8.28e-11,112;UBERON:0004535,2.59e-10,109;UBERON:0002193,6.82e-10,108;UBERON:0002371,8.65e-10,76;UBERON:0002390,1.21e-09,98;UBERON:0003061,1.21e-09,98;UBERON:0004765,2.80e-09,90;UBERON:0001434,8.13e-09,100;UBERON:0001474,5.79e-08,82;UBERON:0002405,6.75e-08,93;UBERON:0001637,3.13e-07,42;UBERON:0003509,3.13e-07,42;UBERON:0004572,3.13e-07,42;UBERON:0000025,3.51e-07,192;UBERON:0002050,7.52e-07,564 | |||
|phase1_expression=195.122579336578,209.818513413163,194.094214440152,187.137067920354,180.572282148624,246.871802320404,164.644920809402,149.717610002159,167.419987676096,130.730454218803,139.560233594486,124.293140742068,148.500808742619,151.490016023097,194.861656928014,274.308659752324,307.374209292228,276.787524256814,267.875106535988,92.4639146156677,109.752371889408,154.846632410175,83.8671442293996,90.8846182483951,90.0140725894736,34.2332057750822,31.2803245804293,35.2624300285283,342.226920858546,292.478001350076,256.530316334738,98.3780710192452,109.337748516505,447.77210631198,67.3964645048624,40.5182312589151,60.4816905029785,204.978301156795,328.090716061152,212.887664172251,115.540384707801,107.85659078432,123.63627246441,248.776386551835,261.868028976345,227.058681271796,355.383997428792,364.294748787338,357.710858383845,658.815578417725,582.253285940646,518.369047915779,421.279221860148,426.019891165325,407.633724648969,332.247729292697,367.33167797786,290.118018418604,424.232274826071,333.445259132061,368.897521586047,454.864942957482,376.587385589641,365.700835957052,422.544651443218,363.693929027021,341.929414698571,544.707106276619,526.697747604403,467.607582650116,348.71011351682,344.707867284361,302.538042393486,213.579094461373,171.99687867172,205.884789889225,191.183330211335,170.600950267951,159.600507590201,218.034748962055,161.321425208462,184.49079530228,112.637596455247,106.497029196116,92.5089624018097,108.389476531893,97.696620836787,120.123259950487,109.072404009502,92.5432141899303,139.457177431815,155.617855183299,150.61565188134,157.283881009041,230.929527948393,49.5162079377145,98.3548850569165,129.300540944475,122.744094902707,89.7791480247941,93.865612790474,95.6364567584161,62.3445530905316,130.573055469423,159.381795943887,147.098506003524,122.132542558022,114.897913793931,112.891513681974,102.115938758883,111.369057167697,113.892612693876,79.0367381653782,81.8674933954522,89.90055047228,109.116897017756,131.827849799061,115.802449127646,108.545447876367,93.0211009826363,114.59068787873,93.1443003559407,92.3025479946747,87.9268018630854,84.9528940555952,92.1063510451226,124.811455531999,160.478967606887,193.894141943043,117.307767145067,468.109183322806,165.663112346798,210.461776794451,80.6009309817583,149.398697369495,181.637534776873,94.6390276990808,113.385924780514,80.2600597722936,128.82477992575,113.219038758439,67.912650645564,129.689122632145,137.190243830239,132.739884004765,119.278870049998,232.01164110542,137.847580848488,174.458447787939,159.355268070383,150.463142376596,162.584338475058,121.846316064266,171.288306402975,173.253267154691,122.42752866333,118.500146026372,141.870800783962,161.873649522453,170.707512509982,228.001393483777,144.451700086517,201.595259534788,153.683167584573,213.067332292903,78.315861705138,81.0551035180473,102.138612798373,113.454311724754,92.0787689781085,126.04279982412,596.965290985367,802.705146787034,115.564923817772,227.116181924761,231.353944811187,179.679258363538,126.494949750227,156.408756549475,188.387673647815,157.988513679963,252.094234482337,128.530157620103,223.350294291543,116.875260726123,170.882535811128,179.19071251328,443.570470461377,175.12180310181,111.812477022712,163.197959162567,97.4706338743248,107.159889171703,91.7143767765683,108.814173278858,105.760347205432,160.671589728315,121.176291442769,196.824475705731,126.512429309386,192.589662006752,91.2381737631039,81.0768008770328,112.488030886578,130.81533102249,171.326677851652,178.33257592213,177.861663194913,68.885620104523,164.225632001478,137.967667654875,70.8214986759189,135.720181007024,108.46666735921,182.394519204958,58.0590582909956,153.755594144371,98.7016057294488,139.363546544441,167.465314864289,87.6873693516037,138.33263086655,129.883413709834,193.647374869623,166.102387439818,158.029332059341,94.4076485443068,85.216641030715,94.0008997814404,108.636785656108,84.0228433415843,39.7825321392655,106.385681984275,117.069850751105,87.0250004520627,225.21844509551,293.083069557852,110.143630837095,113.457496422562,116.167316403838,102.352806695662,118.090658698084,113.889897173326,129.842549758238,129.506166982728,116.19364139781,144.678469106431,172.497381778238,132.938405660042,182.290802118072,78.5881215895351,213.273506019045,109.886922642741,48.5609409356116,86.5838607343519,172.425649350018,146.95563216215,197.82708573341,98.9205088530448,108.32848083548,461.34456031942,137.271391656904,150.104595706284,142.826258929295,194.076571571813,192.440474865511,230.566785263152,199.386351541859,114.579637704095,96.1504501546257,170.382168212479,134.318448189922,162.305229219291,390.87008772486,267.931494477181,205.857441195945,227.299530619829,165.370711014444,77.8266838705379,179.822081832019,84.8786903887499,60.1251535068239,65.1422189444666,46.7097003677606,169.094892500046,202.453865545887,143.005285596257,232.658526590879,177.377424913233,200.629162639737,155.775405783665,111.682560007979,174.819987602145,101.280172718732,160.038384108129,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| |||
|short_description=p1@MAP1LC3B | |||
}} |
Revision as of 12:41, 20 January 2014
Short description: | p1@MAP1LC3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MAP1LC3B_5end |
Coexpression cluster: | NA |
Association with transcript: | 113bp_to_NM_022818, uc002fjx.2, uc010chs.2_5end |
EntrezGene: | MAP1LC3B |
HGNC: | 13352 |
UniProt: | Q658J6Q9GZQ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.62e-20 | 48 |
phagocyte | 4.62e-20 | 48 |
classical monocyte | 8.12e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.12e-20 | 42 |
myeloid leukocyte | 1.04e-15 | 72 |
macrophage dendritic cell progenitor | 9.34e-15 | 61 |
monopoietic cell | 1.27e-14 | 59 |
monocyte | 1.27e-14 | 59 |
monoblast | 1.27e-14 | 59 |
promonocyte | 1.27e-14 | 59 |
myeloid lineage restricted progenitor cell | 1.70e-12 | 66 |
granulocyte monocyte progenitor cell | 2.74e-11 | 67 |
vascular associated smooth muscle cell | 2.44e-07 | 32 |
smooth muscle cell | 7.17e-07 | 43 |
smooth muscle myoblast | 7.17e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 3.55e-16 | 203 |
musculoskeletal system | 2.28e-13 | 167 |
mesoderm | 6.95e-12 | 315 |
mesoderm-derived structure | 6.95e-12 | 315 |
presumptive mesoderm | 6.95e-12 | 315 |
circulatory system | 8.28e-11 | 112 |
cardiovascular system | 2.59e-10 | 109 |
hemolymphoid system | 6.82e-10 | 108 |
bone marrow | 8.65e-10 | 76 |
hematopoietic system | 1.21e-09 | 98 |
blood island | 1.21e-09 | 98 |
skeletal element | 2.80e-09 | 90 |
skeletal system | 8.13e-09 | 100 |
bone element | 5.79e-08 | 82 |
immune system | 6.75e-08 | 93 |
artery | 3.13e-07 | 42 |
arterial blood vessel | 3.13e-07 | 42 |
arterial system | 3.13e-07 | 42 |
tube | 3.51e-07 | 192 |
embryonic structure | 7.52e-07 | 564 |