FFCP PHASE1:Hg19::chr15:101459519..101459585,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79705 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18608 | |||
|TSSclassifier=strong | |||
|UniProt=E9PLF8 | |||
|association_with_transcript=0bp_to_ENST00000527698,ENST00000532029,ENST00000534045_5end | |||
|description=CAGE_peak_1_at_LRRK1_5end | |||
|id=chr15:101459519..101459585,+ | |||
|ontology_enrichment_celltype=CL:0000766!5.99e-26!76;CL:0000557!1.55e-24!71;CL:0002009!1.20e-23!65;CL:0000763!2.66e-23!112;CL:0000049!2.66e-23!112;CL:0002194!2.15e-22!63;CL:0000576!2.15e-22!63;CL:0000040!2.15e-22!63;CL:0000559!2.15e-22!63;CL:0000839!1.44e-20!70;CL:0000738!1.76e-17!140;CL:0000860!2.63e-16!45;CL:0002057!6.10e-16!42;CL:0000037!7.21e-16!172;CL:0000566!7.21e-16!172;CL:0002032!1.21e-14!165;CL:0000837!1.21e-14!165;CL:0000134!1.26e-14!358;CL:0002320!1.37e-14!365;CL:0000988!4.89e-14!182;CL:0000048!4.98e-12!430;CL:0002087!1.09e-11!119;CL:0000723!1.46e-11!436;CL:0002031!5.49e-11!124;CL:0000219!6.43e-11!390;CL:0000034!2.05e-10!444;CL:0000451!8.50e-09!10;CL:0000945!1.97e-08!24;CL:0000826!1.97e-08!24;CL:0002371!2.43e-08!591;CL:0000990!1.85e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000576;5.11e-12;48!CL:0000766;1.96e-11;69!CL:0000473;4.63e-11;39!CL:0000234;4.63e-11;39!CL:0000860;1.98e-10;33!CL:0002057;1.98e-10;33!CL:0000451;5.00e-09;10!CL:0000945;6.19e-08;24!CL:0000763;1.07e-07;100!CL:0000990;1.21e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.96e-26,72;CL:0000557,7.83e-25,67;CL:0000763,1.72e-24,108;CL:0000049,1.72e-24,108;CL:0002009,4.48e-24,61;CL:0002194,8.73e-23,59;CL:0000576,8.73e-23,59;CL:0000040,8.73e-23,59;CL:0000559,8.73e-23,59;CL:0000839,5.85e-21,66;CL:0000738,1.37e-18,136;CL:0000473,1.56e-18,48;CL:0000234,1.56e-18,48;CL:0000037,1.37e-17,168;CL:0002032,3.12e-16,161;CL:0000837,3.12e-16,161;CL:0000860,3.39e-16,42;CL:0002057,3.39e-16,42;CL:0000988,1.13e-15,177;CL:0000134,2.29e-15,354;CL:0002320,3.74e-15,361;CL:0002087,1.57e-12,115;CL:0000048,3.61e-12,427;CL:0002031,7.49e-12,120;CL:0000723,1.15e-11,433;CL:0000219,1.64e-11,386;CL:0000034,1.65e-10,441;CL:0000451,6.33e-09,10;CL:0000945,2.50e-08,24;CL:0000826,2.50e-08,24;CL:0000990,1.45e-07,8;CL:0002393,9.41e-07,9;CL:0002397,9.41e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.38e-12;42!CL:0000049;6.87e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.11e-22!80;UBERON:0002193!1.82e-20!112;UBERON:0001474!3.42e-20!86;UBERON:0002390!1.62e-19!102;UBERON:0003061!1.62e-19!102;UBERON:0004765!1.67e-18!101;UBERON:0001434!1.67e-18!101;UBERON:0002405!4.57e-16!115;UBERON:0003081!4.54e-15!216;UBERON:0002204!1.07e-14!167;UBERON:0002384!1.44e-13!375;UBERON:0000926!2.14e-07!448;UBERON:0004120!2.14e-07!448;UBERON:0006603!2.14e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.47e-23,76;UBERON:0002405,1.48e-22,93;UBERON:0002193,7.21e-21,108;UBERON:0001474,2.21e-20,82;UBERON:0002390,4.72e-20,98;UBERON:0003061,4.72e-20,98;UBERON:0004765,1.69e-18,90;UBERON:0001434,2.32e-18,100;UBERON:0003081,1.02e-14,203;UBERON:0002384,3.51e-14,371;UBERON:0002204,1.19e-13,167;UBERON:0000926,1.61e-09,315;UBERON:0004120,1.61e-09,315;UBERON:0006603,1.61e-09,315 | |||
|phase1_expression=2.54349730978779,2.5692062866918,1.12763523276777,1.0007329835313,2.68176656656373,0.872338524100369,5.06599756336621,1.89515962028049,4.96252693579693,0.491467873003018,0.697801167972428,1.74753097704138,3.9565046734268,1.48519623552056,3.97676850873499,3.36162573225888,1.20538905604795,2.92124036154949,1.95173119516203,0.492484232307152,2.24400760368678,1.88072832886853,0.286235987131057,0.410623275218653,0,9.55167571849391,8.04585776609468,7.47752422479953,5.11373559903575,3.0706351847777,11.1467608787575,1.83884244895785,4.2168828628955,1.47901604066715,9.29606406963619,6.96629239188365,2.93600439334847,9.41792194504192,10.2277668209772,9.11445657006578,6.94137970143765,5.83008598834163,7.7272670290256,7.4153101777578,7.17964293008738,9.70336244751265,4.41615170120801,3.70051099219643,6.50383378879718,5.17846306179871,5.89169625016932,3.31075121844019,4.48169384957604,3.22742341791913,9.47985406160392,4.51781614902251,4.09359225086769,2.47195832889593,1.83650335422542,2.88836124368484,3.83602275479425,4.61791820261403,6.38283704389222,5.54092175692502,4.35313857942876,7.94339314567596,3.73693349397345,2.00998932205395,4.69334626578181,3.04064382587163,6.65939452896706,5.89244217580104,4.74693581161327,5.0701268714866,6.37812899895131,9.22498040236854,7.18903239337569,6.15725260650176,5.94684670779196,8.55038231223746,9.94583385995451,6.94123784305609,1.75996244461323,4.91524750135918,5.33705552318133,6.40095333849761,5.20514783146816,3.4485146397269,3.96626923670917,0.954053754535364,9.10740750575117,6.45960908308033,2.6759125968766,1.32171328579026,2.24203425192614,3.68737718685108,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.383959833463255,2.49861453104692,0.236777252044017,0,0,0.267440195783507,0,7.31420598941885,3.35350429851818,2.55725123687061,3.61439152384566,3.00802746381534,3.0417768981773,1.5905718941022,2.91980922181582,0.189069634328136,0.665188192387692,1.40535657109002,2.81605012320082,5.10013403609559,2.59549109949101,11.3591587779139,13.059730297445,10.5036788809903,18.6022686958167,11.4398982156026,15.2297575545122,2.18638648103376,1.72046919021225,2.08284300964557,1.13061588384802,1.67799774483962,1.6507082516404,0.835979866147242,2.32575083252396,4.26919515224052,3.68192674041137,2.41697590265488,0,3.66093086322254,2.57364156242108,2.43042584364528,3.30408994651095,4.04152870727106,3.37834441449967,3.06633274931766,0.949265659568129,3.48083313467774,2.63560834872127,7.75560528296651,2.61656431285521,1.49091585508596,2.27934920996244,5.69359477496841,6.02356903572509,2.4826786753885,2.24271040056923,1.06748995729705,0.49333509683432,3.7345324247972,2.2900814251847,3.59616186849609,1.21085942115945,1.72852777344,5.85803579584492,1.87296046098192,1.71141546463335,2.09228152772521,2.93586246609412,3.39933183173076,2.94946694074722,2.24569588380383,3.31652656741774,4.02970546585485,5.94001428641027,3.70900393917835,1.82032272387605,7.18618141816238,1.85169725349473,2.87772595705518,2.49357703935765,2.19488810440419,3.37136575378922,2.85452311922534,1.13432183160021,4.66413052791041,5.12537733164562,2.11931901159562,3.90118424909723,2.57631323096097,6.95629458123199,3.16398655763703,6.07594796068558,2.53336213419116,5.80597680761463,2.48534726334208,4.68773564774555,5.32514388774922,2.21654616100809,3.05209066158878,1.54608682530637,2.18196896472668,1.43402297694502,0.487894824518382,0.132529768321485,0.116193942869518,0.10366105501537,0,0,1.56449532329816,2.57296375277154,2.76269842704961,3.71494342425583,5.0531563716871,1.77460200059766,1.18009283054671,1.44606617930089,2.09558548191549,1.52515610864684,1.89816495288877,1.07865046528132,1.17732879075208,1.53898862778556,3.69077727312324,4.20725321410337,2.057870056657,2.94017422771084,0,0,1.77236972004421,0,0.614942192715568,1.02940686179115,2.30475599358114,2.24803506515239,2.21163739305588,1.75918045801206,5.2129328849652,2.07986957055916,0,0.695582429850461,0.352226082707465,0.721832238805369,2.31492756288305,2.28304982681518,2.37061319387782,0,7.14029317653452,4.91408956792399,7.8774516013026,0.93733833986777,1.51183915378974,0.992425680696705,1.61205340865127,1.16253575405585,5.36735750831296,0.492663237895943,1.93706554829097,4.97587477297853,5.33243827642757,10.2256371075368,2.47641787739459,4.58386110669933,3.51652341630141,5.13217338068116,3.39330725920968,3.90445975197093,3.42991719156694,2.13049060256185,2.1798003441664,1.1734125731352,1.29271715757778,3.57656445851882,1.690605505112,0.797814349754612,1.04007436911366,2.05765899409714,0,1.8649552531127,1.28680194292333,5.42621605391443,4.11620168390384,2.28015329005615,2.84313558994037,0.791951872933429,0,0.871533458600294,0.399891964728228,7.29742683847143,3.01354254859276,4.21667878966063,2.39624855491583,2.29723871668228,1.42636905040718,1.30303176000821,1.02738161275192,1.25342674267927,0,0.197030760201927,0,0.513372145118994,0,0,0,0.167516265334349,0,6.74106321552464,11.966458368161,7.0450637284126,3.6807447515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| |||
|short_description=p1@LRRK1 | |||
}} |
Revision as of 01:33, 12 January 2014
Short description: | p1@LRRK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRK1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000527698, ENST00000532029, ENST00000534045_5end |
EntrezGene: | LRRK1 |
HGNC: | 18608 |
UniProt: | E9PLF8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.47e-23 | 76 |
immune system | 1.48e-22 | 93 |
hemolymphoid system | 7.21e-21 | 108 |
bone element | 2.21e-20 | 82 |
hematopoietic system | 4.72e-20 | 98 |
blood island | 4.72e-20 | 98 |
skeletal element | 1.69e-18 | 90 |
skeletal system | 2.32e-18 | 100 |
lateral plate mesoderm | 1.02e-14 | 203 |
connective tissue | 3.51e-14 | 371 |
musculoskeletal system | 1.19e-13 | 167 |
mesoderm | 1.61e-09 | 315 |
mesoderm-derived structure | 1.61e-09 | 315 |
presumptive mesoderm | 1.61e-09 | 315 |