FFCP PHASE1:Hg19::chr15:90809210..90809234,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51335 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18077 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=315bp_to_NR_028052,uc002bpg.1_5end | |||
|description=CAGE_peak_3_at_NGRN_5end | |||
|id=chr15:90809210..90809234,+ | |||
|ontology_enrichment_celltype=CL:0000076!7.51e-07!62 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000076,5.17e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.79e-13!57;UBERON:0005068!1.79e-13!57;UBERON:0006241!1.79e-13!57;UBERON:0007135!1.79e-13!57;UBERON:0003080!4.29e-13!42;UBERON:0002780!5.05e-13!41;UBERON:0001890!5.05e-13!41;UBERON:0006240!5.05e-13!41;UBERON:0002616!3.24e-11!59;UBERON:0000025!3.83e-11!194;UBERON:0001893!4.33e-11!34;UBERON:0002020!4.37e-11!34;UBERON:0003528!4.37e-11!34;UBERON:0001869!4.70e-11!32;UBERON:0002791!1.50e-10!33;UBERON:0004111!1.98e-10!241;UBERON:0001017!4.98e-10!82;UBERON:0005743!6.80e-10!86;UBERON:0000955!1.37e-09!69;UBERON:0006238!1.37e-09!69;UBERON:0003075!3.00e-09!86;UBERON:0007284!3.00e-09!86;UBERON:0001950!3.93e-09!20;UBERON:0002619!4.03e-09!22;UBERON:0002346!6.18e-09!90;UBERON:0000477!1.16e-08!286;UBERON:0000073!1.82e-08!94;UBERON:0001016!1.82e-08!94;UBERON:0000483!2.11e-08!309;UBERON:0000956!2.43e-08!25;UBERON:0000203!2.43e-08!25;UBERON:0003056!2.66e-08!61;UBERON:0000119!3.08e-08!312;UBERON:0007023!2.40e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.84e-10;32!UBERON:0001950;4.52e-10;20!UBERON:0002619;8.81e-10;22!UBERON:0001893;9.53e-10;34!UBERON:0002791;9.69e-10;32!UBERON:0002780;1.29e-09;41!UBERON:0001890;1.29e-09;41!UBERON:0003528;2.11e-09;34!UBERON:0002020;2.11e-09;34!UBERON:0000956;3.18e-08;25!UBERON:0000203;3.18e-08;25!UBERON:0000073;5.42e-08;53!UBERON:0002616;5.42e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,9.39e-14,56;UBERON:0005068,9.39e-14,56;UBERON:0006241,9.39e-14,56;UBERON:0007135,9.39e-14,56;UBERON:0002780,1.58e-13,41;UBERON:0001890,1.58e-13,41;UBERON:0003080,1.58e-13,41;UBERON:0006240,1.58e-13,41;UBERON:0000073,2.47e-13,53;UBERON:0002616,2.47e-13,53;UBERON:0001893,2.36e-11,34;UBERON:0003528,2.38e-11,34;UBERON:0002020,2.38e-11,34;UBERON:0001869,2.75e-11,32;UBERON:0002791,6.45e-11,32;UBERON:0001017,8.22e-11,81;UBERON:0010371,1.92e-10,104;UBERON:0000025,2.13e-10,192;UBERON:0004111,6.46e-10,240;UBERON:0001950,8.25e-10,20;UBERON:0000955,1.00e-09,68;UBERON:0006238,1.00e-09,68;UBERON:0002619,1.64e-09,22;UBERON:0001016,4.33e-09,89;UBERON:0003075,5.84e-09,82;UBERON:0007284,5.84e-09,82;UBERON:0002346,1.43e-08,86;UBERON:0000956,2.79e-08,25;UBERON:0000203,2.79e-08,25;UBERON:0003056,4.50e-08,61;UBERON:0007023,5.90e-08,114;UBERON:0001637,7.01e-07,42;UBERON:0003509,7.01e-07,42;UBERON:0004572,7.01e-07,42 | |||
|phase1_expression=1.2717486548939,3.63970890614671,1.55049844505568,2.00146596706261,2.23480547213644,3.48935409640147,0,0.631719873426831,0.261185628199839,1.22866968250754,1.39560233594486,0.873765488520689,1.84636884759917,0.866364470720326,1.32558950291166,1.34465029290355,4.21886169616784,2.92124036154949,2.92759679274304,1.35433163884467,0.816002764977012,0.940364164434263,0.85870796139317,1.91624195102038,0.627713197974014,0.229240217243854,0.410502947249729,0.0787107813136792,1.18009283054671,1.53531759238885,0.928896739896456,0.919421224478927,1.8072355126695,0.739508020333575,0.92960640696362,0.568676929949686,0.587200878669695,1.10799081706375,0.401088894940283,1.08505435357926,0.671746422719773,1.29557466407592,0.515151135268373,1.16318591023652,0.755751887377619,1.21292030593908,1.39457422143411,0,0.619412741790207,0.863077176966451,1.0246428261164,1.89185783910868,0.689491361473237,0.645484683583826,1.35426486594342,0.376484679085209,0.545812300115692,2.02251136000576,0.918251677112708,0,1.91801137739712,0.989553900560148,0.997318288108159,0.426224750532694,0.290209238628584,0.56738522469114,2.4912889959823,0.251248665256743,1.0429658368404,0.434377689410233,1.21079900526674,0.736555271975129,0.316462387440884,0.633765858935825,0.425208599930087,0.419317291016752,0.44931452458598,0,0.48217676009124,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0,0,0,1.14950487990897,1.32208974556972,0,1.1384259382189,0,1.14681968437569,1.32171328579026,1.12101712596307,0.526768169550154,1.96709770113833,3.14408610199332,5.14003747498773,0.167186495390678,1.95553359980154,0.473447805734733,0,0.891283655081389,4.41908861212256,1.55073726208535,2.16643091012012,0.512365278902701,0.520237390239513,0.164437904603676,0.276350017785848,1.15921234294021,1.77943875794473,0.535081656179426,1.04535523804977,0.113309342697566,3.06576394881537,1.71813722741315,2.53019692019503,1.27426165729639,0,0.950452044448374,0.602300476311091,0.511946444617674,0,0.947109008176067,0.821127996921047,2.82249440514625,2.67440195783507,1.88271725047639,0,0.670700859703636,0.511450247374121,1.0843174571537,1.50401373190767,0.724232594804119,1.5905718941022,0,0.378139268656271,1.55210578223795,0.43917392846563,1.24430121722827,1.82147644146271,1.48313777113772,0.649094787309367,0.348259474598534,0.398873881556595,0.953962497221368,0,0,1.59009925893364,0.860234595106124,2.08284300964557,1.13061588384802,2.93649605346934,1.92582629358047,1.8809546988313,1.03366703667732,4.26919515224052,2.00832367658802,4.02829317109147,0.760272105718513,1.70843440283719,2.94130464276695,1.62028389576352,2.05389375053383,0.898117490504679,1.91439516821648,0,0.949265659568129,3.48083313467774,0,0,1.3082821564276,0,1.51956613997496,1.19168262731897,0.573673241497627,2.4826786753885,1.12135520028461,0,0.98667019366864,0.933633106199299,1.88594940897563,1.63461903113459,1.66493170409425,0.576175924479999,0,0.936480230490962,0.570471821544449,0.747243402759005,2.11382097558777,0.809364721840658,1.12360645361799,0.61246251376468,0.491337269247072,0.516628905878827,1.18800285728205,0.741800787835671,0,1.43723628363248,0.336672227908132,0.375355559615893,0.277064115484183,1.31693286264251,0.30648779579902,0.300476117813194,1.36118619792025,0.89694817844431,1.06778694409284,1.48352330811693,1.50045548042201,1.54578793857658,0.515281080091258,1.11670113798954,0.337552664482532,2.04617710838517,0.252433774244115,0.736399189138395,1.45481451136931,0.710019185033229,1.61203357164224,0.169560592310488,4.05847791642923,1.63647672354501,1.43402297694502,1.34171076742555,1.98794652482228,1.39432731443422,0.725627385107593,1.00928340350251,0.36497735907583,1.56449532329816,0.643240938192885,2.76269842704961,0.928735856063958,1.44375896333917,0.828147600278907,1.85443159085912,2.16909926895134,1.98529150918309,0.871517776369625,1.42362371466658,1.8876383142423,1.76599318612811,2.69323009862473,0.738155454624648,1.40241773803446,0.4115740113314,0,0,1.96565443335525,1.18157981336281,2.20731549707325,0.983907508344908,1.02940686179115,1.31700342490351,3.37205259772859,1.10581869652794,0.277765335475589,0.651616610620649,0,1.44331342025273,0.811512834825538,1.17408694235822,1.73239737313289,0,1.71228737011138,1.58040879591855,1.71697232418975,1.23108503043699,0.234004265139238,0.594524649154913,0.93733833986777,2.51973192298289,2.97727704209012,1.97028749946266,1.16253575405585,0.383382679165211,2.95597942737566,0.176096868026452,0.621984346622316,0.576479813667846,1.00993946741104,0.761974731506028,1.52795370223311,1.17217447210047,0,0.616964956219941,0.300343057843917,1.42913216315289,1.34557301214433,0.43596006883328,0.8800594298514,1.29271715757778,0,0.845302752556,0.531876233169741,0,0.514414748524284,0,0.532844358032199,0.714889968290738,0.542621605391443,1.64648067356154,0.65147236858747,0.355391948742546,1.58390374586686,3.31583314765545,3.48613383440118,1.99945982364114,1.2162378064119,0.502257091432126,0,0.958499421966331,0,0,1.59259437334337,0.410952645100767,0.358121926479791,0.896681151948218,3.34952292343276,3.66566877261179,2.43851768931522,1.77866236955724,1.30139853857622,0,1.00509759200609,0,0,0,1.65766205374414,0.613457458595699,1.00034104211935,1.08506009479894,1.03985430765404,1.42743191037729,1.10391690523754,1.28855556491985,0.300946099727719,4.5481500811197,1.03473071292505,0.664225598535437,0.368738337083406,1.21637060255316,0,0.343143423810856,0.82707210449155,1.72571360654893,1.38745825144478,3.33440328590885,0,1.5119514666484,1.48864684691266,0.153461973288062,2.80660094433074,1.15325234330131,1.02341449813341,0.804269605718038,2.96836132889982,1.69630663182921,0.887808626565635,1.14978018419333,1.55776328755086,0.813472649219715,0.966875596732978,2.00506470303285,0.920809889358963,1.14814448164607,0.546273504020151,0.655622074797121,0.902399225814824,1.00119938235739,0,0,0.949964660035881,2.27466768141793,2.55140557914773,0.647747748306418,1.54227252690289,0.812839312631559,1.00337954770971,0.764628819135115,0,1.11937377361089,0,0.261435451024901,1.02580050046556,0.984043937099117,1.95227036798582,1.23649213977267,0.915694648183434,0.577566499444116,2.29706215198469,1.30012049207304,6.42735719376638,0.773365746336976,1.23238893691716,0.767518373630648,0.964856007391714,0.429680979473094,0.145016693914229,0.681813019328807,1.06838442776085,1.98341898433174,0.384380134730212,0.638063562472921,1.31505115112215,4.18360994367557,0.62962469366128,1.3940745403212,1.54016790088044,2.66153015158511,1.73986598415015,0.37064843820784,1.86062352764589,0.372158369359667,0.632758849437452,0.571890581771475,1.02359116524534,0,0.636406495851874,0.78494864019923,0.539617372749944,2.19629623788844,1.17812402345686,2.42618977887979,3.17020642346017,0.842516912477962,1.46290121726877,2.68084838594413,4.22600587027022,0.818999468447914,0.424216295861138,0,1.10273068709225,3.3171948762061,3.5076070820301,0.578775534266688,0,1.42037263873893,3.0982349809975,1.12678241012897,0.860468113224309,0.589494246078727,2.1400263088875,0,0.633322905892992,1.97576935775941,0,1.04980416073495,1.63577591633371,2.01090682660736,3.26672954583968,1.41215701165169,1.72202149068492,1.68471475667626,0,0.459446800413919,0,0,0.569647187174163,0.476463550915578,0.411362273086194,0,0.540031437238115,1.58625035258854,0.854592569019785,0.962479855263359,0.490080431962063,0.743212700502875,0.865615277858669,0.782560276832555,1.11598390910176,0.997896857164083,0.766021480529467,0.635020748171649,1.29848776109822,0.842391534340376,0.912938716132769,0.47003968731907,0,0.50787533340481,0.481764225311099,0,0,0,0,0.223676107892416,0.667396566847634,0.19538809540204,0.556812347790485,0,0.270455678475983,0.33307196799782,1.4098700508785,1.68426486367398,1.31857361344705,0.849523652246594,0.780103689942349,0.568272293612826,1.67121139316383,1.48482340416319,2.45728561679386,0.994147647766298,2.53204949538923,0.779160935160341,0.494411622680279,1.90012867315194,1.39473591775749,0.552567831062295,1.25966373927138,0.715880777515084,0.369254416383208,2.48831670129446,0.808815160325942,3.58042349351218,0,0.591860433821602,2.3948309234694,0,4.84666373047609,2.13366625772258,0,0.260427761085233,0.437299999980979,1.44999915086959,0.568967241427498,0.508507300585533,1.65471377237555,1.03423011972439,0.583209226766509,0.868124974666461,4.42870692906919,3.73848959738765,0,2.54332297841817,3.25102380848902,3.29078095730959,1.19832309870889,2.50962739701486,1.15425387755696,0.569710279235006,0,0.448788222048861,0.651884231532048,1.91400695839152,0.824378340616761,0.533034776018635,0,0.31396051279005,0,0.225595660617181,0.392125068635479,0.503464760927528,0.948768663620925,0.476809736941136,0.843992258112108,2.28525931422807,0.565412285735763,0.649165919226273,0,1.85760885457012,1.22206028986725,1.48260564340311,0.617819694732514,0.313265848516366,1.14581926067151,1.60515529459758,2.10838001152805,0.182454789215666,0.978323094660449,1.21390189767046,1.97292201424695,1.20990716048664,0.30607276163049,0.379119477770928,1.35291077473043,0.829505531177977,0.664653872707185,1.323967823502,0.313932918407225,0,0.284609546029793,1.24807205711825,1.90915712168644,1.66587075604442,1.30588809870604,0.52418000472609,0.859930162358083,3.19295893253981,1.5348756588099,2.54557916864949,0.678923115418936,0.794305140223502,1.58186518546373,1.37041924646751,1.78843150532691,3.16553979779394,1.75996244461323,0.561111741760736,1.28071796843612,1.39866726707491,1.44090417154106,1.71804894248874,0.857974989309823,4.75380833360894,1.11827282008889,0.942776138467182,0.543616824294456,0.523014231561666,1.4279750469085,2.02265412931063,1.20084057741958,1.77976992559591,0,0.429765441419957,0.525774708558629,1.39641200636127,0.916641696046735,1.43574604915363,1.39775300349294,2.14613024068285,1.56220020209311,0.470284307407084,0,0,0.86661500537946,0.659326867049332,0.876246070104404,1.37798474120648,0.254019996197353,0.795229689809303,3.26888174667781,2.08979093004525,3.16340704173638,4.98528405635022,1.1248694577575,0.77380195455795,3.34122561619136,1.0063040627978,0.945668487590378,0.629455057619977,1.16160370171347,0.717149357331379,1.15149118391667,3.57347663186684,0.662091970365432,0.76280561296425,2.71499800876856,5.18532894720761,0.326587360109409,0,0.738832686744051,1.36310417428337,0.113312091520126,1.31897010310274,2.65013777824443,1.80996138906171,1.58679122091228,0.855434189421647,0,0.747511887973863,1.10043013569766,0.414239055347196,0.992332043623902,0.395223263795889,0.487170393523584,1.91502377331055,0.544017803369474,1.7548292581589,0.919036730290385,0.655745261419609,0.471162288750703,4.43034089983493,6.10131324509816,2.754200475543,1.14681839138014,1.44207766997908,1.30402446176905,1.10678907948985,0.37494122388632,1.36484205787483,1.14186133417987,5.17584803335978,1.87333962322753,1.01444720027578,0.895528817321244,1.63599316893057,2.21922344601045,2.08343305802598,1.50940741051545,1.77962244319307,3.20376095755693,2.41969478021182,1.24349760466224,1.92211694986524,2.38945150745554,1.34940933649081,1.55262956876259,1.65882483136342,1.32920857278997,1.04349012362347,1.80309130796662,0.761610424337591,1.22061219961398,1.27294061441792,1.71856891267982,1.39210127963548,1.99047944349308,1.60011105865261,2.40376993627955,0.673498977531838,0,1.54095864325843,3.85994864474866,2.60994291965212,0,1.15761237161917,1.22368352253234,1.61179956973339,1.85280868296583,1.53498834705095,0.706756583783524,5.40159307158561,1.01365464391844,1.79369063011563,2.07258205038719,2.43087964941906,2.35039341457942,0.389720617678777,0.398594520940089,0.654261577023377,1.63804924423206,2.21195617878347,0.633936370075881,0.59996218756479,0.106691729694141,0.688859918643263,0,1.10463570151104,1.39879507719444,0.622077260032973,0.895260599125562,0.431299245586727,0.786329709279482,1.20130602011215,1.01839517972415,0.637724760305049,1.36329340684902,0,1.90802610392051,0.315446980005013,1.60114149657094,2.1160556621441,1.531227386766,2.0553352030867,4.25089728976755,3.35231104020018,5.74325819874114,2.52071696221718,3.31954811828246,3.55246420390072,0,1.96295437002051,0.707818340086442,1.28400018965175,0.462102664601353,0.381382095467167,0.690359926060101,1.19349733269765,1.35378591028663,0.60511520611056,0,1.04762677792569,0.49131575253029,2.06998520703863,3.51195440015652,2.34323429584154,3.51367554052013,2.72687983833799,2.18789923607288,0,0.496211178389294,1.05522746615772,0.255524855279191,1.60710550763486,3.02655349996942,1.21393120847326,2.50428410486427,0.975726071789027,0.115233987555779,0.342976018874837,2.03909198930495,2.76245648963966,2.00929529502746,0.667388411352415,1.25588948560822,5.65616123697607,0.840816489941367,0,1.07963795609311,1.43325506366115,0.78624198594322,0.632054446930906,0.464965701472501,0.521574816907738,0.801711364730253,0.414432328326074,1.0243108625637,1.38251932362818,1.72090943528111,1.77498001095848,0.852134047591577,1.27016115057279,2.06196181689645,0.93061915699296,1.91107787795487,0.671132590786754,0.588901401691458,0.731507549893617,0.647428837187895,2.46390736454993,5.799072156691,1.45713297917742,0.935757853848423,2.78531085225916,0.713520544665411,2.48481380485712,1.09940516745429,1.20770274853339,1.08043821351123,0.437119121007915,1.88126918544609,0.490296643507811,0.942706188406504,1.17785080268967,1.78227840196252,1.6906229103336,0.679708458751268,0.751871343838829,0.773494655682926,0.199882311849858,1.07132363163395,1.76447435857846,1.28386186702669,0,0.458729283404541,1.72007499781742,1.10440093535229,2.65166811744567,2.61810414204226,0,2.60396512716726,2.31087814315709,2.16313281061895,1.13549782351571,2.29457701123761,0.380095503034311,1.01988829741982,0.801652215796681,1.8378979906969,1.50424523575425,1.66713136080127,2.14371304124943,2.48750831837634,1.65492793379032,1.91910583710883,0.952257725854961,0.581300188524055,0.869046000142011,0.897054900644907,1.40023748211963,0.808468755832877,1.95945073107265,1.02669990325584,0.404112318087525,1.79305513481691,0.665320713092027,1.05824249194267,0.533636729388577,0,0.538951212639521,2.34640942403454,1.34465588601153,0,4.66029741929859,1.40891655513718,0.320568492303233 | |||
|short_description=p3@NGRN | |||
}} |
Revision as of 01:14, 12 January 2014
Short description: | p3@NGRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NGRN_5end |
Coexpression cluster: | NA |
Association with transcript: | 315bp_to_NR_028052, uc002bpg.1_5end |
EntrezGene: | NGRN |
HGNC: | 18077 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
squamous epithelial cell | 5.17e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
neural tube | 9.39e-14 | 56 |
neural rod | 9.39e-14 | 56 |
future spinal cord | 9.39e-14 | 56 |
neural keel | 9.39e-14 | 56 |
regional part of forebrain | 1.58e-13 | 41 |
forebrain | 1.58e-13 | 41 |
anterior neural tube | 1.58e-13 | 41 |
future forebrain | 1.58e-13 | 41 |
regional part of nervous system | 2.47e-13 | 53 |
regional part of brain | 2.47e-13 | 53 |
telencephalon | 2.36e-11 | 34 |
brain grey matter | 2.38e-11 | 34 |
gray matter | 2.38e-11 | 34 |
cerebral hemisphere | 2.75e-11 | 32 |
regional part of telencephalon | 6.45e-11 | 32 |
central nervous system | 8.22e-11 | 81 |
ecto-epithelium | 1.92e-10 | 104 |
tube | 2.13e-10 | 192 |
anatomical conduit | 6.46e-10 | 240 |
neocortex | 8.25e-10 | 20 |
brain | 1.00e-09 | 68 |
future brain | 1.00e-09 | 68 |
regional part of cerebral cortex | 1.64e-09 | 22 |
nervous system | 4.33e-09 | 89 |
neural plate | 5.84e-09 | 82 |
presumptive neural plate | 5.84e-09 | 82 |
neurectoderm | 1.43e-08 | 86 |
cerebral cortex | 2.79e-08 | 25 |
pallium | 2.79e-08 | 25 |
pre-chordal neural plate | 4.50e-08 | 61 |
adult organism | 5.90e-08 | 114 |
artery | 7.01e-07 | 42 |
arterial blood vessel | 7.01e-07 | 42 |
arterial system | 7.01e-07 | 42 |