FFCP PHASE1:Hg19::chr15:90777308..90777347,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10519 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16920 | |||
|TSSclassifier=strong | |||
|UniProt=Q99828 | |||
|association_with_transcript=-29bp_to_ENST00000328649,NM_006384,uc002bpb.3_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_CIB1_5end | |||
|id=chr15:90777308..90777347,- | |||
|ontology_enrichment_celltype=CL:0000838!3.86e-13!52;CL:0000542!4.35e-13!53;CL:0000051!4.35e-13!53;CL:0000791!1.38e-10!18;CL:0000789!1.38e-10!18;CL:0002420!1.38e-10!18;CL:0002419!1.38e-10!18;CL:0000790!1.38e-10!18;CL:0000084!1.43e-09!25;CL:0000827!1.43e-09!25;CL:0000625!1.39e-08!11;CL:0000236!5.61e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.03e-18;18!CL:0000789;7.03e-18;18!CL:0002419;7.03e-18;18!CL:0000084;1.66e-15;25!CL:0000625;1.69e-13;11!CL:0000542;5.23e-12;53!CL:0000236;3.33e-11;13!CL:0000624;1.82e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.87e-19,52;CL:0000542,1.19e-18,53;CL:0000051,1.19e-18,53;CL:0000791,7.19e-18,18;CL:0000789,7.19e-18,18;CL:0002420,7.19e-18,18;CL:0002419,7.19e-18,18;CL:0000790,7.19e-18,18;CL:0000084,2.00e-15,25;CL:0000827,2.00e-15,25;CL:0000625,1.84e-13,11;CL:0000236,5.60e-10,14;CL:0000738,5.36e-08,136;CL:0000624,1.72e-07,6;CL:0002087,3.76e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;7.03e-18;18!CL:0000051;5.23e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.43e-12!115;UBERON:0001049!1.21e-10!57;UBERON:0005068!1.21e-10!57;UBERON:0006241!1.21e-10!57;UBERON:0007135!1.21e-10!57;UBERON:0003075!3.50e-08!86;UBERON:0007284!3.50e-08!86;UBERON:0001017!3.92e-08!82;UBERON:0005743!9.03e-08!86;UBERON:0000955!9.63e-08!69;UBERON:0006238!9.63e-08!69;UBERON:0002780!1.28e-07!41;UBERON:0001890!1.28e-07!41;UBERON:0006240!1.28e-07!41;UBERON:0002616!1.53e-07!59;UBERON:0002346!1.91e-07!90;UBERON:0003080!5.05e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,9.92e-13,56;UBERON:0005068,9.92e-13,56;UBERON:0006241,9.92e-13,56;UBERON:0007135,9.92e-13,56;UBERON:0000073,4.98e-12,53;UBERON:0002616,4.98e-12,53;UBERON:0007023,1.19e-10,114;UBERON:0000955,7.64e-10,68;UBERON:0006238,7.64e-10,68;UBERON:0001017,7.94e-10,81;UBERON:0003075,2.72e-09,82;UBERON:0007284,2.72e-09,82;UBERON:0002780,3.81e-09,41;UBERON:0001890,3.81e-09,41;UBERON:0003080,3.81e-09,41;UBERON:0006240,3.81e-09,41;UBERON:0002346,2.44e-08,86;UBERON:0001016,2.88e-08,89;UBERON:0003528,3.42e-07,34;UBERON:0002020,3.42e-07,34;UBERON:0001869,4.68e-07,32;UBERON:0003056,5.05e-07,61;UBERON:0000178,9.12e-07,15;UBERON:0000179,9.12e-07,15;UBERON:0000463,9.12e-07,15 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,1.0007329835313,0.893922188854576,0,0,0.631719873426831,0,0.245733936501509,2.79120467188971,0.655324116390517,1.05506791291381,0.618831764800233,1.32558950291166,0,0,0,0.487932798790507,1.10808952269109,0.612002073732759,1.56727360739044,0.572471974262113,0.136874425072884,0.125542639594803,0.61130724598361,0.328402357799783,0.865818594450472,3.54027849164014,5.75744097145819,3.09632246632152,2.75826367343678,0.90361775633475,0.739508020333575,0.309868802321207,0.142169232487422,1.17440175733939,3.87796785972314,2.00544447470142,1.73608696572681,0,1.29557466407592,0,0.145398238779565,0.755751887377619,0.485168122375632,0.232429036905685,0.822335776043652,0,0.575384784644301,0.256160706529101,0.945928919554341,0.689491361473237,1.29096936716765,0,0.752969358170419,0.818718450173537,0,1.53041946185451,0.320929027076094,0,0.329851300186716,0.598390972864896,0.426224750532694,0,0.56738522469114,0,0.75374599577023,0,0.434377689410233,0,0,0,0.211255286311942,0,0.419317291016752,1.01095768031846,0,0.16072558669708,0.570025487482497,0.79566670879636,0.730656615058536,7.03984977845291,2.18455444504853,3.55803701545422,5.54749289336459,3.2031678962881,5.17277195959035,4.62731410949403,7.63243003628291,3.41527781465669,2.93618594685469,3.05818582500183,0,3.92355994087075,0.263384084775077,1.37696839079683,9.43225830597995,3.90642848099067,5.85152733867373,9.12582346574053,4.73447805734733,3.89653456815823,4.45641827540694,13.2572658363677,5.75988125917415,18.4146627360211,1.92136979588513,7.28332346335318,0.822189523018381,3.31620021343018,2.31842468588042,8.45233410023744,5.88589821797369,10.4535523804977,2.94604291013672,7.2811893784365,3.4362744548263,6.07247260846807,7.64556994377832,11.0684187155591,11.4054245333805,4.9689789295665,3.07167866770604,9.99445812418767,8.05042656949657,4.92676798152628,5.84659555351724,9.62784704820626,5.50332734754636,0,0.670700859703636,0.12786256184353,0,0,0,0,0.486634870302636,0.378139268656271,0.665188192387692,0.87834785693126,2.42311289670768,1.09288586487763,0.370784442784429,0,0,0,0.476981248610684,0.571994910780128,0.371457501329565,0.198762407366705,0,0.694281003215189,1.69592382577203,0.419499436209906,0.550236083880135,0,0,0,0,0.402829317109147,0,0.976248230192678,0.735326160691737,1.62028389576352,0,0.22452937262617,1.0135033243499,0,1.89853131913626,0.183201743930407,3.9534125230819,3.87780264148325,0,0,0.12663051166458,0.397227542439656,0,0,0,0,0.49333509683432,0,0.404132016209064,0,0.151357427644931,0,0.234321431833797,0,0.570471821544449,0.149448680551801,0.23486899728753,0.647491777472526,0.421352420106746,0,0.368502951935304,0.103325781175765,0,0,0,0,0.336672227908132,0.125118519871964,0.277064115484183,0,0,0.150238058906597,0.113432183160021,0,0.213557388818567,0.211931901159562,0,0.103052529238439,0.257640540045629,0.37223371266318,0.168776332241266,0.194874010322397,0,0.0920498986422993,0.161646056818812,0.710019185033229,0.302256294682921,0.339121184620975,0.966304265816484,0,0,0.121973706129595,0.265059536642971,0.580969714347592,0.414644220061482,0.504641701751257,0,0,0,0,0,0,0.118306800039844,0.674338760312407,0.241011029883482,0.330881918197182,0.435758888184812,0.71181185733329,0.674156540800822,0.196221465125346,1.15424147083917,0,1.40241773803446,0.8231480226628,0,0,0,1.18157981336281,1.7658523976586,0.245976877086227,0.514703430895577,0.109750285408626,1.1240175325762,0.301586917234893,0.462942225792648,0,1.03993478527958,1.44331342025273,0.927443239800615,0,0.144366447761074,2.31492756288305,0.190254152234598,0,1.71697232418975,0.738651018262192,0.702012795417713,0.148631162288728,1.87467667973554,0.335964256397719,0.567100388969546,0.626909658919938,0.581267877027924,0.383382679165211,0,0.44024217006613,0.414656231081544,0,0.25248486685276,0.380987365753014,0.763976851116555,0,0,0.205654985406647,0.300343057843917,0,0.448524337381443,0,0.2933531432838,0.129271715757778,0,0,0,0,0.257207374262142,0,0.266422179016099,0.285955987316295,0.542621605391443,0.823240336780769,0,0,0,0.602878754119172,0,0.399891964728228,0,0,0,0.239624855491583,1.14861935834114,0,0.144781306667579,0.205476322550383,0.537182889719687,0,7.09310736726938,9.27198571895924,5.77543663258868,0,1.30139853857622,0.773288812777695,1.34013012267479,0,2.24702107184155,0,0.828831026872071,0,0.500170521059677,0.271265023699736,0.415941723061614,0,0.157702415033935,0.234282829985426,0.300946099727719,0,1.03473071292505,0,0.184369168541703,0.0868836144680828,0,0,2.48121631347465,1.94142780736755,2.66818894508611,1.5156378572313,1.66435439510497,0.604780586659361,0.248107807818777,0.306923946576125,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0.462629081407967,0,0.492762936082855,0,0.232420756919918,0.241718899183244,0.802025881213139,0.368323955743585,0.114814448164607,0.364182336013434,0,2.25599806453706,1.84836809050595,0.784349769176855,2.92278449306521,1.68882606228601,0,0.170093705276516,1.7273273288171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| |||
|short_description=p3@CIB1 | |||
}} |
Revision as of 01:13, 12 January 2014
Short description: | p3@CIB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CIB1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -29bp_to_ENST00000328649, NM_006384, uc002bpb.3_5end |
EntrezGene: | CIB1 |
HGNC: | 16920 |
UniProt: | Q99828 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.87e-19 | 52 |
lymphocyte | 1.19e-18 | 53 |
common lymphoid progenitor | 1.19e-18 | 53 |
mature alpha-beta T cell | 7.19e-18 | 18 |
alpha-beta T cell | 7.19e-18 | 18 |
immature T cell | 7.19e-18 | 18 |
mature T cell | 7.19e-18 | 18 |
immature alpha-beta T cell | 7.19e-18 | 18 |
T cell | 2.00e-15 | 25 |
pro-T cell | 2.00e-15 | 25 |
CD8-positive, alpha-beta T cell | 1.84e-13 | 11 |
B cell | 5.60e-10 | 14 |
leukocyte | 5.36e-08 | 136 |
CD4-positive, alpha-beta T cell | 1.72e-07 | 6 |
nongranular leukocyte | 3.76e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
neural tube | 9.92e-13 | 56 |
neural rod | 9.92e-13 | 56 |
future spinal cord | 9.92e-13 | 56 |
neural keel | 9.92e-13 | 56 |
regional part of nervous system | 4.98e-12 | 53 |
regional part of brain | 4.98e-12 | 53 |
adult organism | 1.19e-10 | 114 |
brain | 7.64e-10 | 68 |
future brain | 7.64e-10 | 68 |
central nervous system | 7.94e-10 | 81 |
neural plate | 2.72e-09 | 82 |
presumptive neural plate | 2.72e-09 | 82 |
regional part of forebrain | 3.81e-09 | 41 |
forebrain | 3.81e-09 | 41 |
anterior neural tube | 3.81e-09 | 41 |
future forebrain | 3.81e-09 | 41 |
neurectoderm | 2.44e-08 | 86 |
nervous system | 2.88e-08 | 89 |
brain grey matter | 3.42e-07 | 34 |
gray matter | 3.42e-07 | 34 |
cerebral hemisphere | 4.68e-07 | 32 |
pre-chordal neural plate | 5.05e-07 | 61 |
blood | 9.12e-07 | 15 |
haemolymphatic fluid | 9.12e-07 | 15 |
organism substance | 9.12e-07 | 15 |