FFCP PHASE1:Hg19::chr15:67418177..67418204,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z9Q2,P84022 | |||
|association_with_transcript=123bp_to_ENST00000540846,NM_001145102,uc010ujr.1_5end | |||
|coexpression_cluster_id=C2343 | |||
|description=CAGE_peak_9_at_SMAD3_5end | |||
|id=chr15:67418177..67418204,+ | |||
|ontology_enrichment_celltype=CL:0000222!5.76e-20!119;CL:0000183!3.20e-18!59;CL:0000192!5.69e-18!42;CL:0000514!5.69e-18!42;CL:0000187!5.35e-17!54;CL:0000680!5.59e-17!57;CL:0000056!5.59e-17!57;CL:0000355!5.59e-17!57;CL:0000055!8.04e-16!180;CL:0000359!2.30e-14!32;CL:0000220!2.25e-13!246;CL:0000393!2.45e-13!60;CL:0000211!2.45e-13!60;CL:0002321!6.38e-13!248;CL:0000548!1.71e-12!679;CL:0000004!1.71e-12!679;CL:0000255!1.71e-12!679;CL:0000012!5.43e-12!682;CL:0000077!8.33e-12!19;CL:0000066!1.05e-11!254;CL:0000057!4.14e-08!75;CL:0002494!4.40e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.52e-19;32!CL:0000192;5.61e-17;43!CL:0000077;1.02e-14;19!CL:0000187;1.30e-09;55!CL:0002539;8.75e-09;10!CL:0000393;1.18e-07;61!CL:0000211;1.18e-07;61!CL:0002494;2.08e-07;16!CL:0002595;6.17e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,3.07e-23,43;CL:0000514,3.07e-23,43;CL:0000359,6.76e-21,32;CL:0000222,1.02e-19,121;CL:0000187,3.74e-17,55;CL:0000680,6.60e-17,58;CL:0000056,6.60e-17,58;CL:0000355,6.60e-17,58;CL:0000077,7.82e-15,19;CL:0000393,2.07e-14,61;CL:0000211,2.07e-14,61;CL:0002321,1.75e-10,250;CL:0002539,4.14e-09,10;CL:0000066,2.02e-08,253;CL:0002494,3.34e-07,16;CL:0002595,4.01e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;5.61e-17;43!CL:0000355;3.35e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.51e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0005256!6.80e-19!143;UBERON:0003104!7.22e-19!238;UBERON:0009142!7.22e-19!238;UBERON:0000481!1.15e-18!347;UBERON:0000486!4.02e-18!82;UBERON:0001134!2.25e-17!61;UBERON:0002036!2.25e-17!61;UBERON:0003082!2.25e-17!61;UBERON:0000914!8.90e-17!83;UBERON:0002329!8.90e-17!83;UBERON:0003077!8.90e-17!83;UBERON:0003059!8.90e-17!83;UBERON:0007282!8.90e-17!83;UBERON:0009618!8.90e-17!83;UBERON:0007285!8.90e-17!83;UBERON:0002385!3.95e-16!63;UBERON:0001015!3.95e-16!63;UBERON:0000383!3.95e-16!63;UBERON:0000490!2.54e-15!138;UBERON:0004290!5.73e-15!70;UBERON:0002100!6.60e-15!216;UBERON:0000477!9.50e-13!286;UBERON:0003914!1.92e-12!118;UBERON:0004573!3.67e-12!33;UBERON:0004571!3.67e-12!33;UBERON:0000119!4.76e-12!312;UBERON:0001637!1.15e-11!42;UBERON:0003509!1.15e-11!42;UBERON:0004572!1.15e-11!42;UBERON:0000483!1.73e-11!309;UBERON:0002049!1.76e-11!79;UBERON:0007798!1.76e-11!79;UBERON:0001048!3.07e-11!168;UBERON:0004119!2.12e-10!169;UBERON:0000925!2.12e-10!169;UBERON:0006595!2.12e-10!169;UBERON:0000475!2.61e-10!365;UBERON:0004872!1.47e-09!84;UBERON:0001007!3.80e-09!155;UBERON:0001555!3.80e-09!155;UBERON:0007026!3.80e-09!155;UBERON:0004535!4.54e-09!110;UBERON:0001981!8.00e-09!60;UBERON:0007500!8.00e-09!60;UBERON:0004537!8.00e-09!60;UBERON:0006965!8.00e-09!60;UBERON:0000055!9.48e-09!69;UBERON:0001004!1.61e-08!72;UBERON:0001009!2.85e-08!113;UBERON:0001444!7.77e-08!48;UBERON:0004111!5.87e-07!241;UBERON:0000926!8.63e-07!448;UBERON:0004120!8.63e-07!448;UBERON:0006603!8.63e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.74e-16;33!UBERON:0004571;7.74e-16;33!UBERON:0001637;6.48e-13;42!UBERON:0003509;6.48e-13;42!UBERON:0004572;6.48e-13;42!UBERON:0004237;8.75e-09;10!UBERON:0004695;8.75e-09;10!UBERON:0002111;8.75e-09;10!UBERON:0004178;8.75e-09;10!UBERON:0000947;3.05e-07;21!UBERON:0010191;3.05e-07;21!UBERON:0007500;3.62e-07;56!UBERON:0001981;3.62e-07;56!UBERON:0004537;3.62e-07;56!UBERON:0003834;6.17e-07;5!UBERON:0001533;6.17e-07;5!UBERON:0003513;8.91e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.10e-19,42;UBERON:0003509,2.10e-19,42;UBERON:0004572,2.10e-19,42;UBERON:0004573,1.14e-18,33;UBERON:0004571,1.14e-18,33;UBERON:0001134,2.72e-17,62;UBERON:0002036,2.72e-17,62;UBERON:0003082,2.72e-17,62;UBERON:0002385,2.19e-16,64;UBERON:0001015,2.19e-16,64;UBERON:0000383,2.19e-16,64;UBERON:0000486,3.40e-16,83;UBERON:0007524,9.26e-14,73;UBERON:0002329,1.20e-13,71;UBERON:0003059,1.20e-13,71;UBERON:0007282,1.20e-13,71;UBERON:0004290,1.20e-13,71;UBERON:0009618,1.20e-13,71;UBERON:0003077,2.65e-13,72;UBERON:0007285,2.65e-13,72;UBERON:0005256,1.23e-12,122;UBERON:0004872,1.42e-12,83;UBERON:0000490,3.01e-12,148;UBERON:0007500,3.50e-12,59;UBERON:0001981,3.50e-12,59;UBERON:0004537,3.50e-12,59;UBERON:0006965,3.50e-12,59;UBERON:0007503,1.92e-11,78;UBERON:0002049,4.97e-11,78;UBERON:0007798,4.97e-11,78;UBERON:0000055,3.96e-10,68;UBERON:0003914,6.18e-10,117;UBERON:0004535,1.08e-09,109;UBERON:0002100,2.64e-09,199;UBERON:0001009,4.03e-09,112;UBERON:0004237,4.14e-09,10;UBERON:0004695,4.14e-09,10;UBERON:0002111,4.14e-09,10;UBERON:0004178,4.14e-09,10;UBERON:0003104,4.15e-09,160;UBERON:0009142,4.15e-09,160;UBERON:0000119,1.08e-07,309;UBERON:0000483,1.47e-07,306;UBERON:0000947,1.86e-07,21;UBERON:0010191,1.86e-07,21;UBERON:0003834,4.01e-07,5;UBERON:0001533,4.01e-07,5;UBERON:0003513,6.40e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,0.697801167972428,0,0,0.866364470720326,0.331397375727916,1.34465029290355,1.80808358407193,1.46062018077475,2.92759679274304,1.10808952269109,0.408001382488506,0,0,0,0.251085279189606,0,0,0,0,0,0,0,1.8072355126695,0,0,0,0,0,0,0.434021741431704,0,0,0,0.290796477559129,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0.376484679085209,0,0,0.306083892370903,0,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,0.383587685530591,3.61439152384566,1.00267582127178,0.289693037921647,0,0,0.567208902984407,0.221729397462564,0.351339142772504,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0.258416759169329,1.42306505074684,0,0,0,0,0.367663080345869,0,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0,0,3.92554586160197,8.474187572046,1.43418310374407,2.12801029319014,0.560677600142307,1.06748995729705,3.45334567784024,0.311211035399766,1.0776853765575,0.817309515567294,0.302714855289863,0.576175924479999,1.17160715916898,0.624320153660641,0,0.448346041655403,0.117434498643765,0,0.421352420106746,2.24569588380383,0.859840221182376,0.516628905878827,3.56400857184616,0.741800787835671,0,0.718618141816238,0.673344455816265,0.250237039743928,1.6623846929051,0.438977620880838,0.919463387397059,2.25357088359895,1.02088964844019,0.358779271377724,0.213557388818567,0.211931901159562,0.300091096084402,0.309157587715317,0,0,0,0.0974370051611986,0,0.0920498986422993,7.11242650002772,0,0.10075209822764,0.339121184620975,0.193260853163297,0.818238361772504,2.00763216772303,0,0,0,0,0,0,0,0,0,0.464367928031979,0,1.30137480043828,1.85443159085912,1.20505514941741,2.09558548191549,1.30727666455444,2.37270619111097,1.34831308160164,1.37355025587742,0.38474715694639,0,4.20725321410337,0.8231480226628,1.47008711385542,0,0,0,0,0,3.08822058537346,0.109750285408626,0,0.100528972411631,0,0.651616610620649,5.19967392639789,4.3299402607582,0,0.469634776943287,0.288732895522148,0.462985512576611,0.380508304469197,5.53143078571493,8.58486162094873,0,0,0,0,0.16798212819886,1.41775097242386,0.0895585227028483,0.581267877027924,0,0,0,0.207328115540772,0,0,0,0,0,1.71072446022705,0.102827492703324,0,0,0.672786506072164,2.1798003441664,0.1466765716419,1.29271715757778,0,0.845302752556,0,0,1.28603687131071,4.25547396069835,1.5985330740966,0.57191197463259,0.542621605391443,0,0.325736184293735,1.06617584622764,0,4.52159065589379,3.48613383440118,5.09862255028491,0,0,0,0.718874566474748,0,0,0.434343920002738,2.26023954805422,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34960640891054,1.50051156317903,1.08506009479894,2.28767947683888,1.42743191037729,0.473107245101804,1.17141414992713,0.300946099727719,0,1.03473071292505,0,0,0.260650843404249,0.979005787313703,1.37257369524342,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0.710246901252508,0.657017248110473,2.07701771673448,0.813472649219715,0,3.60911646545913,0.0920809889358963,0.918515585316854,1.82091168006717,5.90059867317409,0,0.15403067420883,0.784349769176855,0,0.316654886678627,0,0.680374821106063,0.215915916102139,0,0.270946437543853,0.501689773854853,0.254876273045038,0.831076008928724,1.11937377361089,0,0,0.512900250232778,0.656029291399411,0,0,0,0,0.574265537996172,0,1.6068392984416,0.096670718292122,0.308097234229289,0.15350367472613,0.689182862422653,0.107420244868274,0.290033387828457,0.340906509664404,0.0890320356467374,0.165284915360978,0.384380134730212,1.65896526242959,0.2023155617111,4.64845549297286,1.88887408098384,0,4.00443654228915,10.1138145760234,5.21959795245044,1.8532421910392,3.14874750832381,0,2.84741482246853,0.571890581771475,1.79128453917934,0.855877976067841,5.40945521474092,2.35484592059769,0.179872457583315,0.54907405947211,0.353437207037059,8.08729926293264,9.5106192703805,2.52755073743389,3.41343617362713,1.94970791705028,3.16950440270266,1.36499911407986,1.1312434556297,0,5.51365343546124,9.28814565337708,3.5076070820301,4.05142873986681,4.59126326432643,1.21746226177622,3.40805847909725,2.53526042279017,0.573645408816206,0.392996164052485,1.78335525740625,1.06428319221179,0.211107635297664,1.31717957183961,4.17420491142287,5.59895552391973,0.48111056362756,0.670302275535787,0,0,3.44404298136984,1.68471475667626,1.33029046061003,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0.568272293612826,0,0.296964680832639,0,0,0.140669416410513,1.66963057534359,0.16480387422676,0,0.19924798825107,0,0,0.102268682502155,0,1.86623752597084,6.0211795268709,0.716084698702437,0,0.197286811273867,0,2.22273980289274,0,0,0,2.86470537193757,0,0,0.455173793141999,7.37335585849022,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44849212238722,0,0,0,0,0,0,0,0,0,2.40773294189637,0,0,0.19566461893209,0.242780379534093,0,0,0.61214552326098,0.126373159256976,0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| |||
|short_description=p9@SMAD3 | |||
}} |
Revision as of 00:12, 12 January 2014
Short description: | p9@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SMAD3_5end |
Coexpression cluster: | C2343_squamous_malignant_meningioma_embryonic_mesothelioma_bile_papillotubular |
Association with transcript: | 123bp_to_ENST00000540846, NM_001145102, uc010ujr.1_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | B7Z9Q2P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 3.07e-23 | 43 |
smooth muscle myoblast | 3.07e-23 | 43 |
vascular associated smooth muscle cell | 6.76e-21 | 32 |
mesodermal cell | 1.02e-19 | 121 |
muscle cell | 3.74e-17 | 55 |
muscle precursor cell | 6.60e-17 | 58 |
myoblast | 6.60e-17 | 58 |
multi-potent skeletal muscle stem cell | 6.60e-17 | 58 |
mesothelial cell | 7.82e-15 | 19 |
electrically responsive cell | 2.07e-14 | 61 |
electrically active cell | 2.07e-14 | 61 |
embryonic cell | 1.75e-10 | 250 |
aortic smooth muscle cell | 4.14e-09 | 10 |
epithelial cell | 2.02e-08 | 253 |
cardiocyte | 3.34e-07 | 16 |
smooth muscle cell of the subclavian artery | 4.01e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.51e-07 | 106 |