FFCP PHASE1:Hg19::chr15:55790788..55790791,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=100533483,9236,161582 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=43019,24227,21493 | |||
|TSSclassifier=strong | |||
|UniProt=A8K9T0 | |||
|association_with_transcript=-6bp_to_NR_037923,uc002acy.2,uc010ugh.1,uc010ugi.1_5end | |||
|description=CAGE_peak_28_at_CCPG1_5end,CAGE_peak_5_at_DYX1C1-CCPG1_5end,CAGE_peak_5_at_DYX1C1_5end | |||
|id=chr15:55790788..55790791,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000222;3.10e-50;1!CL:0000322;8.69e-18;3!CL:0002202;8.14e-07;9!CL:0002632;8.14e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.12e-17,3;CL:0002202,8.85e-07,9;CL:0002632,8.85e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.10e-50;1!UBERON:0003056;8.69e-18;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3910;6.30e-26;2!DOID:3908;3.10e-11;5!DOID:1325;2.11e-08;7!DOID:3904;2.11e-08;7!DOID:3905;8.14e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,9.18e-26,2;DOID:3908,3.60e-11,5;DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7;DOID:3905,8.85e-07,9 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.10e-50;1!UBERON:0001785;3.10e-50;1!UBERON:0002464;3.10e-50;1!UBERON:0004904;3.10e-50;1!UBERON:0001021;3.10e-50;1!UBERON:0004903;6.30e-26;2!UBERON:0003714;6.30e-26;2!UBERON:0005162;6.30e-26;2!UBERON:0000122;6.30e-26;2!UBERON:0002173;6.30e-26;2!UBERON:0002186;6.30e-26;2!UBERON:0004821;8.69e-18;3!UBERON:0007499;8.69e-18;3!UBERON:0003215;8.69e-18;3!UBERON:0010368;8.69e-18;3!UBERON:0009911;8.69e-18;3!UBERON:0002299;8.69e-18;3!UBERON:0006524;8.69e-18;3!UBERON:0008874;8.69e-18;3!UBERON:0002169;8.69e-18;3!UBERON:0004894;8.69e-18;3!UBERON:0009856;1.06e-13;4!UBERON:0000010;8.14e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.42e-50,1;UBERON:0001785,2.42e-50,1;UBERON:0002464,2.42e-50,1;UBERON:0004904,2.42e-50,1;UBERON:0001021,2.42e-50,1;UBERON:0003902,2.42e-50,1;UBERON:0005425,2.42e-50,1;UBERON:0003714,5.56e-26,2;UBERON:0005162,5.56e-26,2;UBERON:0000122,5.56e-26,2;UBERON:0004903,9.18e-26,2;UBERON:0002173,9.18e-26,2;UBERON:0002186,9.18e-26,2;UBERON:0004821,1.12e-17,3;UBERON:0003215,1.12e-17,3;UBERON:0010368,1.12e-17,3;UBERON:0009911,1.12e-17,3;UBERON:0002299,1.12e-17,3;UBERON:0006524,1.12e-17,3;UBERON:0008874,1.12e-17,3;UBERON:0002169,1.12e-17,3;UBERON:0004894,1.12e-17,3;UBERON:0001781,1.00e-13,4;UBERON:0000966,1.32e-09,6;UBERON:0005388,1.32e-09,6;UBERON:0001802,1.32e-09,6;UBERON:0000010,7.91e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0,0,0,0,0,0.364909578431332,0,0,0,0,0,0.126373159256976,0.300646838828985,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288109595976299,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0.717873024576814,0.199679000498991,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,1.70509637733254,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371807292777007,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0.101988829741982,0,0.0918948995348449,0,0,0.803892390468535,0,0.103432995861895,0,0.476128862927481,0,0,0,0.190941474834495,0.404234377916439,0,0,0,0,0,0.162806537221949,0,0,0,0,0,0,0,0,0 | |||
|short_description=p28@CCPG1,p5@DYX1C1-CCPG1,p5@DYX1C1 | |||
}} |
Revision as of 23:41, 11 January 2014
Short description: | p28@CCPG1, p5@DYX1C1-CCPG1, p5@DYX1C1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_28_at_CCPG1_5end, CAGE_peak_5_at_DYX1C1-CCPG1_5end, CAGE_peak_5_at_DYX1C1_5end |
Coexpression cluster: | NA |
Association with transcript: | -6bp_to_NR_037923, uc002acy.2, uc010ugh.1, uc010ugi.1_5end |
EntrezGene: | 100533483,9236,161582 |
HGNC: | 24227, 21493&submit=Submit 43019, 24227, 21493 |
UniProt: | A8K9T0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.12e-17 | 3 |
epithelial cell of tracheobronchial tree | 8.85e-07 | 9 |
epithelial cell of lower respiratory tract | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.42e-50 | 1 |
cranial nerve | 2.42e-50 | 1 |
nerve trunk | 2.42e-50 | 1 |
nerve connecting eye with brain | 2.42e-50 | 1 |
nerve | 2.42e-50 | 1 |
retinal neural layer | 2.42e-50 | 1 |
presumptive neural retina | 2.42e-50 | 1 |
neural tissue | 5.56e-26 | 2 |
multi cell component structure | 5.56e-26 | 2 |
neuron projection bundle | 5.56e-26 | 2 |
bronchoalveolar duct junction | 9.18e-26 | 2 |
alveolar duct | 9.18e-26 | 2 |
bronchiole | 9.18e-26 | 2 |
pulmonary alveolus epithelium | 1.12e-17 | 3 |
alveolus | 1.12e-17 | 3 |
pulmonary lobule | 1.12e-17 | 3 |
lobule | 1.12e-17 | 3 |
alveolus of lung | 1.12e-17 | 3 |
alveolar system | 1.12e-17 | 3 |
pulmonary acinus | 1.12e-17 | 3 |
alveolar sac | 1.12e-17 | 3 |
alveolar wall | 1.12e-17 | 3 |
layer of retina | 1.00e-13 | 4 |
retina | 1.32e-09 | 6 |
photoreceptor array | 1.32e-09 | 6 |
posterior segment of eyeball | 1.32e-09 | 6 |
peripheral nervous system | 7.91e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 9.18e-26 | 2 |
non-small cell lung carcinoma | 3.60e-11 | 5 |
bronchus cancer | 2.35e-08 | 7 |
bronchogenic carcinoma | 2.35e-08 | 7 |
lung carcinoma | 8.85e-07 | 9 |