FFCP PHASE1:Hg19::chr15:45879636..45879649,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26258 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8549 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-139bp_to_uc001zvs.2_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_5_at_PLDN_5end | |||
|id=chr15:45879636..45879649,+ | |||
|ontology_enrichment_celltype=CL:0000766!5.12e-38!76;CL:0000557!7.33e-35!71;CL:0002009!4.80e-34!65;CL:0000763!2.82e-33!112;CL:0000049!2.82e-33!112;CL:0002194!8.84e-33!63;CL:0000576!8.84e-33!63;CL:0000040!8.84e-33!63;CL:0000559!8.84e-33!63;CL:0000839!4.04e-32!70;CL:0000860!1.83e-26!45;CL:0002057!3.56e-26!42;CL:0000738!1.08e-22!140;CL:0002032!2.77e-22!165;CL:0000837!2.77e-22!165;CL:0000037!4.55e-22!172;CL:0000566!4.55e-22!172;CL:0000988!6.34e-21!182;CL:0002031!7.14e-19!124;CL:0002087!2.53e-18!119;CL:0000134!4.07e-08!358;CL:0000219!2.21e-07!390;CL:0002320!4.72e-07!365;CL:0000048!8.74e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.23e-27;33!CL:0002057;1.23e-27;33!CL:0000473;5.32e-26;39!CL:0000234;5.32e-26;39!CL:0000576;1.36e-24;48!CL:0000766;5.70e-21;69!CL:0000763;8.11e-12;100!CL:0000094;8.67e-08;8!CL:0000081;1.92e-07;11!CL:0000738;3.54e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.71e-49,72;CL:0000557,7.47e-45,67;CL:0002009,3.40e-44,61;CL:0002194,1.82e-42,59;CL:0000576,1.82e-42,59;CL:0000040,1.82e-42,59;CL:0000559,1.82e-42,59;CL:0000839,7.69e-42,66;CL:0000763,7.72e-40,108;CL:0000049,7.72e-40,108;CL:0000473,3.10e-38,48;CL:0000234,3.10e-38,48;CL:0000860,2.85e-35,42;CL:0002057,2.85e-35,42;CL:0000738,4.27e-26,136;CL:0000037,1.18e-24,168;CL:0002032,2.66e-24,161;CL:0000837,2.66e-24,161;CL:0000988,3.75e-24,177;CL:0002031,3.33e-22,120;CL:0002087,6.24e-21,115;CL:0000134,3.49e-09,354;CL:0002320,2.75e-08,361;CL:0000094,9.20e-08,8;CL:0000219,1.33e-07,386;CL:0000081,2.98e-07,11;CL:0000048,3.54e-07,427;CL:0002393,7.24e-07,9;CL:0002397,7.24e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-25;42!CL:0000049;6.98e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.95e-32!102;UBERON:0003061!6.95e-32!102;UBERON:0002371!6.59e-31!80;UBERON:0002193!3.09e-30!112;UBERON:0001474!6.37e-29!86;UBERON:0004765!1.39e-26!101;UBERON:0001434!1.39e-26!101;UBERON:0002405!1.45e-22!115;UBERON:0002204!4.12e-14!167;UBERON:0003081!7.11e-10!216;UBERON:0002384!2.90e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.92e-08;15!UBERON:0000179;4.92e-08;15!UBERON:0000463;4.92e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.02e-40,98;UBERON:0003061,2.02e-40,98;UBERON:0002193,3.23e-39,108;UBERON:0002371,3.98e-39,76;UBERON:0001474,7.06e-37,82;UBERON:0004765,3.77e-33,90;UBERON:0002405,4.28e-32,93;UBERON:0001434,2.02e-31,100;UBERON:0003081,3.91e-17,203;UBERON:0002204,2.98e-15,167;UBERON:0002384,2.52e-08,371;UBERON:0000926,3.61e-08,315;UBERON:0004120,3.61e-08,315;UBERON:0006603,3.61e-08,315;UBERON:0000178,9.20e-08,15;UBERON:0000179,9.20e-08,15;UBERON:0000463,9.20e-08,15 | |||
|phase1_expression=1.09007027562334,0.642301571672949,1.69145284915165,0,1.34088328328186,1.74467704820074,0,1.26343974685366,0.522371256399677,0.982935746006035,0,0.218441372130172,0.527533956456907,0.866364470720326,0,0.672325146451775,1.80808358407193,0.730310090387373,1.95173119516203,0.123121058076788,0.408001382488506,0,0.85870796139317,0.684372125364421,0.376627918784408,0.382067028739756,0.656804715599566,0.472264687882075,3.54027849164014,2.68680578668049,5.10893206943051,0.919421224478927,0,0.369754010166788,1.78174561334694,0.995184627411951,0.293600439334847,6.09394949385065,7.42014455639524,6.2933152507597,2.91090116511902,3.2389366601898,3.34848237924443,5.96132778996215,9.06902264853143,9.94594650870046,6.97287110717054,9.04569353648017,13.6270803193846,23.3030837780942,28.6899991312593,31.2156543452932,10.3423704220986,9.68227025375739,10.8341189275473,7.9061782607894,9.00590295190891,9.66310983113864,9.18251677112708,12.5162320559677,7.03270838378945,30.3463196171779,24.7334935450824,28.9832830362232,6.96502172708602,12.4824749432051,6.22822248995575,21.6073852120799,21.3807996552283,30.8408159481266,6.65939452896706,11.7848843516021,10.7597211729901,2.74631872205524,1.70083439972035,3.98351426465914,2.58355851636939,3.15371474967163,4.8217676009124,1.14005097496499,2.58591680358817,1.64397738388171,0,0,1.77901850772711,1.28019066769952,0.400395987036012,0.574752439954483,1.32208974556972,0,0,1.17447437874188,1.14681968437569,0,2.24203425192614,0.790152254325231,0.590129310341499,0.393010762749165,1.02800749499755,0,0.32592226663359,0,0,0.222820913770347,1.17842362989935,0.221533894583621,0.541607727530031,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0,0,0.453237370790265,0.766440987203842,0.34362744548263,0.506039384039006,0,0.651083453856419,0.950452044448374,0.301150238155546,0.255973222308837,0,0.473554504088034,0,0.80642697289893,0.534880391567015,0.579297615531196,0,0,0.639312809217652,0.722878304769133,0.50133791063589,0.724232594804119,1.5905718941022,3.40644409211845,0.567208902984407,0.221729397462564,0.790513071238134,0.654895377488563,0,0.741568885568859,28.8847180352668,24.7264226964959,16.6197450648581,0.715471872916026,1.14398982156026,0.371457501329565,0.79504962946682,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0.208994966536811,0.258416759169329,0.71153252537342,1.33888245105868,0.402829317109147,0,0,1.83831540172934,0,0.625098097988558,0.22452937262617,1.0135033243499,0,0.949265659568129,0.732806975721629,17.1314542666882,7.75560528296651,0,1.49091585508596,2.40597972162702,1.32409180813219,0,1.06400514659507,0,1.06748995729705,1.2333377420858,0.622422070799533,0.942974704487816,0.163461903113459,0.302714855289863,0,0,0,0.570471821544449,0.747243402759005,0.469737994575059,0.647491777472526,0.140450806702248,0.61246251376468,0.245668634623536,0.723280468230358,0,0.741800787835671,0,0,0.168336113954066,0.750711119231785,1.10825646193673,1.75591048352335,1.83892677479412,1.05166641234618,1.02088964844019,0.538168907066586,0.427114777637135,1.27159140695737,0,0.824420233907511,1.03056216018252,1.11670113798954,0.337552664482532,1.26668106709558,0.504867548488229,0.368199594569197,0.484938170456436,0,0.806016785821122,0.67824236924195,0.966304265816484,0.272746120590835,1.14721838155602,0.121973706129595,0.530119073285941,0.464775771478074,1.14027160516907,0.504641701751257,1.09493207722749,1.56449532329816,1.28648187638577,0,0.928735856063958,0,0.591534000199219,0.168584690078102,0.482022059766964,0.882351781859152,0.435758888184812,0.949082476444386,0.404493924480493,0.98110732562673,0.769494313892781,0,0,0.4115740113314,0,1.26755034821831,5.89696330006576,0,0,1.22988438543114,0.686271241194102,0.329250856225877,0,0.502644862058154,0.648119116109707,0,0,1.44331342025273,0.927443239800615,1.05667824812239,1.58803092537181,1.85194205030644,1.71228737011138,0.790204397959275,0,2.70838706696137,2.34004265139238,2.22946743433092,0,2.01578553838631,1.27597587518148,0.806026704325635,0,0.383382679165211,3.4486426652716,1.14462964217194,1.4512968087854,1.00883967391873,0.6312121671319,0.761974731506028,0.381988425558278,1.17217447210047,0,0.205654985406647,0.300343057843917,0,0.224262168690721,0.43596006883328,0.95339771567235,0.646358578788889,0,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0.57191197463259,0.542621605391443,0,0.65147236858747,0.355391948742546,0.791951872933429,0.301439377059586,0.871533458600294,0.099972991182057,2.43247561282381,1.00451418286425,2.10833939483032,1.19812427745791,0,2.85273810081437,1.73737568001095,0.205476322550383,0.895304816199478,0.336255431980582,0.788123040807709,0.431255149719035,0.513372145118994,1.27047312111232,0,0,1.50764638800914,0.637938751653163,3.74503511973591,5.9832291840805,4.55857064779639,0.12269149171914,0,0.271265023699736,0.415941723061614,1.60586089917446,0.473107245101804,0.468565659970853,0.300946099727719,0,0,1.32845119707087,0.921845842708516,0.868836144680828,0.195801157462741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| |||
|short_description=p5@PLDN | |||
}} |
Revision as of 23:21, 11 January 2014
Short description: | p5@PLDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PLDN_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -139bp_to_uc001zvs.2_5end |
EntrezGene: | PLDN |
HGNC: | 8549 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.71e-49 | 72 |
granulocyte monocyte progenitor cell | 7.47e-45 | 67 |
macrophage dendritic cell progenitor | 3.40e-44 | 61 |
monopoietic cell | 1.82e-42 | 59 |
monocyte | 1.82e-42 | 59 |
monoblast | 1.82e-42 | 59 |
promonocyte | 1.82e-42 | 59 |
myeloid lineage restricted progenitor cell | 7.69e-42 | 66 |
myeloid cell | 7.72e-40 | 108 |
common myeloid progenitor | 7.72e-40 | 108 |
defensive cell | 3.10e-38 | 48 |
phagocyte | 3.10e-38 | 48 |
classical monocyte | 2.85e-35 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.85e-35 | 42 |
leukocyte | 4.27e-26 | 136 |
hematopoietic stem cell | 1.18e-24 | 168 |
hematopoietic oligopotent progenitor cell | 2.66e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.66e-24 | 161 |
hematopoietic cell | 3.75e-24 | 177 |
hematopoietic lineage restricted progenitor cell | 3.33e-22 | 120 |
nongranular leukocyte | 6.24e-21 | 115 |
mesenchymal cell | 3.49e-09 | 354 |
connective tissue cell | 2.75e-08 | 361 |
granulocyte | 9.20e-08 | 8 |
motile cell | 1.33e-07 | 386 |
blood cell | 2.98e-07 | 11 |
multi fate stem cell | 3.54e-07 | 427 |
intermediate monocyte | 7.24e-07 | 9 |
CD14-positive, CD16-positive monocyte | 7.24e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.02e-40 | 98 |
blood island | 2.02e-40 | 98 |
hemolymphoid system | 3.23e-39 | 108 |
bone marrow | 3.98e-39 | 76 |
bone element | 7.06e-37 | 82 |
skeletal element | 3.77e-33 | 90 |
immune system | 4.28e-32 | 93 |
skeletal system | 2.02e-31 | 100 |
lateral plate mesoderm | 3.91e-17 | 203 |
musculoskeletal system | 2.98e-15 | 167 |
connective tissue | 2.52e-08 | 371 |
mesoderm | 3.61e-08 | 315 |
mesoderm-derived structure | 3.61e-08 | 315 |
presumptive mesoderm | 3.61e-08 | 315 |
blood | 9.20e-08 | 15 |
haemolymphatic fluid | 9.20e-08 | 15 |
organism substance | 9.20e-08 | 15 |