FFCP PHASE1:Hg19::chr14:52326800..52326810,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54331 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4404 | |||
|TSSclassifier=weak | |||
|UniProt=P59768 | |||
|association_with_transcript=-211bp_to_NM_001243773,NM_001243774,NM_053064_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_25_at_GNG2_5end | |||
|id=chr14:52326800..52326810,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;1.27e-17;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.81e-99;3!UBERON:0006241;2.89e-12;3!UBERON:0003057;2.89e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.90e-52!57;UBERON:0005068!3.90e-52!57;UBERON:0006241!3.90e-52!57;UBERON:0007135!3.90e-52!57;UBERON:0001017!3.00e-50!82;UBERON:0005743!1.15e-47!86;UBERON:0003076!5.42e-47!15;UBERON:0003057!5.42e-47!15;UBERON:0000073!1.25e-42!94;UBERON:0001016!1.25e-42!94;UBERON:0002616!2.44e-38!59;UBERON:0003075!1.19e-35!86;UBERON:0007284!1.19e-35!86;UBERON:0000955!1.50e-34!69;UBERON:0006238!1.50e-34!69;UBERON:0002346!8.11e-34!90;UBERON:0004733!3.35e-33!12;UBERON:0002028!3.35e-33!12;UBERON:0007277!3.35e-33!12;UBERON:0004732!1.59e-30!13;UBERON:0002298!7.84e-30!8;UBERON:0007023!3.86e-25!115;UBERON:0002020!2.98e-24!34;UBERON:0003528!2.98e-24!34;UBERON:0004121!7.97e-23!169;UBERON:0000924!3.76e-22!173;UBERON:0006601!3.76e-22!173;UBERON:0001893!1.72e-20!34;UBERON:0002680!3.54e-20!9;UBERON:0001895!3.54e-20!9;UBERON:0010092!3.54e-20!9;UBERON:0002780!1.69e-19!41;UBERON:0001890!1.69e-19!41;UBERON:0006240!1.69e-19!41;UBERON:0000033!5.28e-19!123;UBERON:0003080!5.64e-19!42;UBERON:0001869!1.46e-18!32;UBERON:0002791!5.15e-18!33;UBERON:0000153!7.08e-18!129;UBERON:0007811!7.08e-18!129;UBERON:0001950!2.37e-17!20;UBERON:0002240!2.97e-16!3;UBERON:0001896!5.45e-16!3;UBERON:0005290!5.45e-16!3;UBERON:0010096!5.45e-16!3;UBERON:0006331!9.00e-16!3;UBERON:0002619!1.04e-15!22;UBERON:0000988!1.41e-15!3;UBERON:0001871!3.99e-15!7;UBERON:0000025!8.73e-14!194;UBERON:0000956!1.02e-13!25;UBERON:0000203!1.02e-13!25;UBERON:0002308!2.25e-13!9;UBERON:0000125!2.25e-13!9;UBERON:0000200!7.77e-13!6;UBERON:0003056!2.97e-12!61;UBERON:0002148!2.46e-11!2;UBERON:0009662!2.46e-11!2;UBERON:0004111!6.45e-11!241;UBERON:0005174!6.12e-10!5;UBERON:0001137!6.12e-10!5;UBERON:0002037!1.34e-08!6;UBERON:0006215!1.34e-08!6;UBERON:0002420!1.45e-08!9;UBERON:0007245!1.45e-08!9;UBERON:0010009!1.45e-08!9;UBERON:0010011!1.45e-08!9;UBERON:0000454!1.45e-08!9;UBERON:0000477!3.14e-08!286;UBERON:0002771!1.99e-07!3;UBERON:0000483!3.65e-07!309;UBERON:0000119!4.89e-07!312;UBERON:0000064!9.78e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.18e-50;6!UBERON:0002680;9.38e-34;9!UBERON:0001895;9.38e-34;9!UBERON:0004733;1.47e-25;12!UBERON:0002028;1.47e-25;12!UBERON:0004732;1.15e-23;13!UBERON:0001016;2.21e-12;83!UBERON:0002240;2.89e-12;3!UBERON:0005174;2.89e-12;3!UBERON:0001137;2.89e-12;3!UBERON:0000073;1.10e-08;53!UBERON:0002616;1.10e-08;53!UBERON:0001017;1.89e-08;75!UBERON:0001872;6.34e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.84e-50,6;UBERON:0006215,3.84e-50,6;UBERON:0003076,1.14e-35,15;UBERON:0003057,1.14e-35,15;UBERON:0002680,8.87e-34,9;UBERON:0001895,8.87e-34,9;UBERON:0010092,8.87e-34,9;UBERON:0004733,1.41e-25,12;UBERON:0002028,1.41e-25,12;UBERON:0007277,1.41e-25,12;UBERON:0004732,1.11e-23,13;UBERON:0001049,5.77e-15,56;UBERON:0005068,5.77e-15,56;UBERON:0006241,5.77e-15,56;UBERON:0007135,5.77e-15,56;UBERON:0001017,9.81e-15,81;UBERON:0001016,2.44e-13,89;UBERON:0002240,2.89e-12,3;UBERON:0005174,2.89e-12,3;UBERON:0001137,2.89e-12,3;UBERON:0003075,2.00e-10,82;UBERON:0007284,2.00e-10,82;UBERON:0000073,2.12e-10,53;UBERON:0002616,2.12e-10,53;UBERON:0002346,5.77e-10,86;UBERON:0010371,2.53e-08,104;UBERON:0000955,3.85e-08,68;UBERON:0006238,3.85e-08,68;UBERON:0001872,6.55e-08,5;UBERON:0004121,3.21e-07,171;UBERON:0000924,3.21e-07,171;UBERON:0006601,3.21e-07,171 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0.254094624222463,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,4.5774520895125,5.41838373663001,3.54657142744257,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468528891450678,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0.5013797880454,0,0,0,0,0.244052529803926,0,0.573409195690071,0.776503360757966,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.504143392443436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,3.28184885410932,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.981542335574726,0.297046400327086,2.9585900930838,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p25@GNG2 | |||
}} |
Revision as of 20:05, 11 January 2014
Short description: | p25@GNG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_GNG2_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -211bp_to_NM_001243773, NM_001243774, NM_053064_5end |
EntrezGene: | GNG2 |
HGNC: | 4404 |
UniProt: | P59768 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.84e-50 | 6 |
rhombic lip | 3.84e-50 | 6 |
posterior neural tube | 1.14e-35 | 15 |
chordal neural plate | 1.14e-35 | 15 |
regional part of metencephalon | 8.87e-34 | 9 |
metencephalon | 8.87e-34 | 9 |
future metencephalon | 8.87e-34 | 9 |
segmental subdivision of hindbrain | 1.41e-25 | 12 |
hindbrain | 1.41e-25 | 12 |
presumptive hindbrain | 1.41e-25 | 12 |
segmental subdivision of nervous system | 1.11e-23 | 13 |
neural tube | 5.77e-15 | 56 |
neural rod | 5.77e-15 | 56 |
future spinal cord | 5.77e-15 | 56 |
neural keel | 5.77e-15 | 56 |
central nervous system | 9.81e-15 | 81 |
nervous system | 2.44e-13 | 89 |
spinal cord | 2.89e-12 | 3 |
dorsal region element | 2.89e-12 | 3 |
dorsum | 2.89e-12 | 3 |
neural plate | 2.00e-10 | 82 |
presumptive neural plate | 2.00e-10 | 82 |
regional part of nervous system | 2.12e-10 | 53 |
regional part of brain | 2.12e-10 | 53 |
neurectoderm | 5.77e-10 | 86 |
ecto-epithelium | 2.53e-08 | 104 |
brain | 3.85e-08 | 68 |
future brain | 3.85e-08 | 68 |
parietal lobe | 6.55e-08 | 5 |
ectoderm-derived structure | 3.21e-07 | 171 |
ectoderm | 3.21e-07 | 171 |
presumptive ectoderm | 3.21e-07 | 171 |