FFCP PHASE1:Hg19::chr13:93879165..93879189,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10082 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4454 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y625 | |||
|association_with_transcript=70bp_to_ENST00000377047_5end | |||
|coexpression_cluster_id=C1192 | |||
|description=CAGE_peak_3_at_GPC6_5end | |||
|id=chr13:93879165..93879189,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.28e-27!180;CL:0000057!1.68e-12!75;CL:0000393!2.18e-09!60;CL:0000211!2.18e-09!60;CL:0000680!6.80e-09!57;CL:0000056!6.80e-09!57;CL:0000355!6.80e-09!57;CL:0000187!1.81e-08!54;CL:0000183!3.80e-08!59;CL:0000499!4.43e-07!27;CL:0002319!7.46e-07!25;CL:0000327!7.76e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000327;5.58e-08;15!CL:0000499;7.77e-08;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.18e-12,76;CL:0000327,5.72e-08,15;CL:0000499,7.16e-08,28;CL:0000680,2.53e-07,58;CL:0000056,2.53e-07,58;CL:0000355,2.53e-07,58;CL:0000393,3.20e-07,61;CL:0000211,3.20e-07,61;CL:0000187,7.41e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.48e-20!365;UBERON:0000481!8.79e-16!347;UBERON:0000119!4.22e-12!312;UBERON:0000483!1.09e-11!309;UBERON:0002100!5.25e-10!216;UBERON:0005256!2.22e-09!143;UBERON:0002385!9.49e-09!63;UBERON:0001015!9.49e-09!63;UBERON:0000383!9.49e-09!63;UBERON:0001134!1.20e-08!61;UBERON:0002036!1.20e-08!61;UBERON:0003082!1.20e-08!61;UBERON:0000468!2.08e-08!659;UBERON:0000073!5.06e-08!94;UBERON:0001016!5.06e-08!94;UBERON:0004290!1.00e-07!70;UBERON:0005743!2.72e-07!86;UBERON:0000477!3.27e-07!286;UBERON:0000914!3.69e-07!83;UBERON:0002329!3.69e-07!83;UBERON:0003077!3.69e-07!83;UBERON:0003059!3.69e-07!83;UBERON:0007282!3.69e-07!83;UBERON:0009618!3.69e-07!83;UBERON:0007285!3.69e-07!83;UBERON:0000025!5.18e-07!194;UBERON:0001017!6.66e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,9.88e-10,160;UBERON:0009142,9.88e-10,160;UBERON:0002100,4.62e-08,199;UBERON:0000119,6.57e-08,309;UBERON:0005256,7.06e-08,122;UBERON:0000483,1.50e-07,306;UBERON:0002385,3.08e-07,64;UBERON:0001015,3.08e-07,64;UBERON:0000383,3.08e-07,64;UBERON:0001134,4.21e-07,62;UBERON:0002036,4.21e-07,62;UBERON:0003082,4.21e-07,62 | |||
|phase1_expression=5.08699461957559,3.21150785836475,9.44394507443007,2.00146596706261,13.4088328328186,9.59572376510406,0,0.631719873426831,2.87304191019822,2.45733936501509,0.697801167972428,0,0,4.82688776544182,8.61633176892581,2.6893005858071,0.602694528023977,0.730310090387373,0.975865597581014,2.58554221961255,2.85600967741954,3.44800193625897,12.3081474466354,8.89683762973747,5.02170558379211,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,78.0181972204677,12.7433163343691,7.41602858692476,27.8308147336116,12.0321098552613,12.7464936685525,2.3858578411533,15.0856809793817,23.633704291017,17.5166223995426,17.7426267100115,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.424298792383,2.15271869829786,3.97227542439656,30.9783550408719,3.54668382198357,2.24271040056923,14.9448594021587,3.94668077467456,7.78027588499416,3.90660949002095,3.26923806226917,2.4217188423189,2.88087962239999,1.17160715916898,0.624320153660641,0.570471821544449,0.298897361103602,2.81842796745036,3.23745888736263,2.10676210053373,1.42907919878425,1.10550885580591,1.34323515528495,3.56400857184616,1.23633464639278,0.910161361938026,0,0.505008341862199,1.12606667884768,0,0,0.612975591598039,2.55404700141215,1.36118619792025,7.89314397030993,1.70845911054854,3.39091041855299,6.00182192168805,4.43125875725287,6.1833729610951,2.41951913231067,4.21940830603166,4.28722822709274,8.83518209854401,2.85354685791128,3.23292113637624,19.8805371809304,6.14587799188606,1.01736355386293,0,0,0,0.731842236777572,0.927708378250397,1.04574548582567,3.52447587052259,2.01856680700503,2.55484151353081,0,0,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,6.9967581926338,5.88034845542168,0,0.982827216677626,2.36315962672562,0,0,13.382289203285,0.219500570817251,0,0,0.185176890317059,0.325808305310325,0,5.77325368101093,8.34698915820553,35.9270604361614,0,0,0,0.790204397959275,1.71697232418975,0,0,0,0,0.16798212819886,0,0.716468181622786,0,0,0,0,0,0,0,0,0,0,5.13217338068116,0,0,0,1.00917975910825,7.41132117016576,1.0267360014933,15.12479074366,0,2.535908257668,0.26593811658487,0,0.514414748524284,0,0,24.1632809282269,1.08524321078289,2.46972101034231,2.93162565864362,14.9264618471869,0,2.71295439353627,0.871533458600294,0.99972991182057,0,0,0,0.718874566474748,2.29723871668228,1.42636905040718,1.59259437334337,3.08214483825575,1.79060963239896,0,0,0,0,5.08189248444927,1.30139853857622,0.773288812777695,2.51274398001523,5.10351001322531,0,0,0,24.9063728189854,3.50119364741774,3.52644530809656,0.623912584592421,0,0,0.819989904948992,3.61135319673263,0,2.0694614258501,1.32845119707087,0.553107505625109,0.260650843404249,0.195801157462741,1.02943027143257,0,0,0,0,0,0,5.21026396419431,2.14846762603287,3.36792113319688,6.02254001501795,6.65219423786715,9.65123526861645,1.48418066444991,2.15893571323718,2.13074070375753,2.05317890034523,7.2695620085707,0.929683027679674,0,0,0.276242966807689,5.0518357192427,5.09855270418808,4.19598127870157,0.902399225814824,2.46449078734127,3.13739907670742,0,7.8108205380728,0,0,2.37507507712353,0,1.89662506280697,2.50844886927427,0,0,1.79099803777743,0,0,0.512900250232778,0.984043937099117,2.60302715731442,1.33953315142039,2.01452822600355,2.39277549769705,0,0.650060246036521,6.42735719376638,10.5371082938413,6.31599330170042,9.05671680884164,3.1702411671442,9.66782203814463,6.81578461396874,6.05109054654316,30.5379882268309,0.165284915360978,0.192190067365106,0,0,0,26.4442371337738,1.3940745403212,1.84820148105653,1.06461206063404,0,0.18532421910392,1.86062352764589,1.116475108079,2.84741482246853,5.71890581771475,0.511795582622668,14.5499255931533,9.22789418985217,0.78494864019923,5.57604618508276,14.2759255462748,6.47968212901275,0.202182481573316,0,0.421258456238981,0.975267478179181,2.68084838594413,1.05650146756755,5.45999645631943,8.48432591722277,9.04064932961942,6.61638412255349,0.66343897524122,0,1.73632660280006,2.62357900818653,1.01455188481352,1.54911749049875,0.845086807596724,0.860468113224309,1.47373561519682,1.07001315444375,2.48332744849418,2.74439925886963,6.91519275215794,0.379473173765715,0.699869440489966,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0,0,0,0,0,0,0,5.50351315082095,0,3.36956613736151,0,0,0,0.338583555603207,0,0,0,0,1.22896305723383,0,1.00109485027145,0,0,0,0,0,0,0,1.17206543417515,0,0,0,0,0,0,0,0.562677665642051,2.00355669041231,0,0.63337622438398,2.98871982376605,3.03912307084262,0,1.02268682502155,0,0,0.179736702294654,0,0,2.66337195219721,0,0,0.969332746095218,0.834912883456661,1.99613798001194,3.38556089410803,0,0.724999575434793,0,0.254253650292766,0.236387681767936,3.10269035917318,7.29011533458136,13.1954996149302,1.77148277162768,0.60298219312704,1.52581736317083,0.442317039724898,0,2.19385397153973,0,0,2.07765697960252,50.8181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| |||
|short_description=p3@GPC6 | |||
}} |
Revision as of 18:16, 11 January 2014
Short description: | p3@GPC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GPC6_5end |
Coexpression cluster: | C1192_extraskeletal_Cardiac_Lens_cholangiocellular_pineal_Fibroblast_rectum |
Association with transcript: | 70bp_to_ENST00000377047_5end |
EntrezGene: | GPC6 |
HGNC: | 4454 |
UniProt: | Q9Y625 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.18e-12 | 76 |
extracellular matrix secreting cell | 5.72e-08 | 15 |
stromal cell | 7.16e-08 | 28 |
muscle precursor cell | 2.53e-07 | 58 |
myoblast | 2.53e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.53e-07 | 58 |
electrically responsive cell | 3.20e-07 | 61 |
electrically active cell | 3.20e-07 | 61 |
muscle cell | 7.41e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 9.88e-10 | 160 |
entire embryonic mesenchyme | 9.88e-10 | 160 |
trunk | 4.62e-08 | 199 |
cell layer | 6.57e-08 | 309 |
trunk mesenchyme | 7.06e-08 | 122 |
epithelium | 1.50e-07 | 306 |
muscle tissue | 3.08e-07 | 64 |
musculature | 3.08e-07 | 64 |
musculature of body | 3.08e-07 | 64 |
skeletal muscle tissue | 4.21e-07 | 62 |
striated muscle tissue | 4.21e-07 | 62 |
myotome | 4.21e-07 | 62 |