FFCP PHASE1:Hg19::chr13:44453976..44454026,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=144811 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26789 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IV20,Q7Z395 | |||
|association_with_transcript=7bp_to_ENST00000325686,NM_153218,uc001uzf.3_5end | |||
|description=CAGE_peak_3_at_LACC1_5end | |||
|id=chr13:44453976..44454026,+ | |||
|ontology_enrichment_celltype=CL:0000557!3.94e-11!71;CL:0002009!1.66e-10!65;CL:0002057!2.35e-10!42;CL:0002194!2.85e-10!63;CL:0000576!2.85e-10!63;CL:0000040!2.85e-10!63;CL:0000559!2.85e-10!63;CL:0000839!8.04e-10!70;CL:0000766!2.30e-08!76;CL:0000860!4.23e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.37e-15;39!CL:0000234;3.37e-15;39!CL:0000860;9.02e-15;33!CL:0002057;9.02e-15;33!CL:0000576;1.70e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.54e-13,48;CL:0000234,3.54e-13,48;CL:0000557,6.26e-13,67;CL:0002009,2.70e-12,61;CL:0002194,4.69e-12,59;CL:0000576,4.69e-12,59;CL:0000040,4.69e-12,59;CL:0000559,4.69e-12,59;CL:0000839,9.43e-12,66;CL:0000860,4.13e-10,42;CL:0002057,4.13e-10,42;CL:0000766,1.03e-09,72 | |||
|ontology_enrichment_development_v019=CL:0002057;2.85e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.93e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.09e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!1.01e-11!167;UBERON:0000062!5.52e-11!511;UBERON:0004765!7.44e-11!101;UBERON:0001434!7.44e-11!101;UBERON:0002371!2.59e-10!80;UBERON:0000467!3.48e-10!625;UBERON:0000480!4.72e-10!626;UBERON:0001474!8.72e-10!86;UBERON:0000468!3.46e-09!659;UBERON:0000926!1.36e-08!448;UBERON:0004120!1.36e-08!448;UBERON:0006603!1.36e-08!448;UBERON:0000923!1.60e-08!604;UBERON:0005291!1.60e-08!604;UBERON:0006598!1.60e-08!604;UBERON:0002532!1.60e-08!604;UBERON:0002050!2.29e-08!605;UBERON:0005423!2.29e-08!605;UBERON:0000922!4.12e-08!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.23e-11,76;UBERON:0002204,2.83e-11,167;UBERON:0001474,5.81e-11,82;UBERON:0004765,1.88e-10,90;UBERON:0001434,4.07e-10,100;UBERON:0005423,4.76e-09,581;UBERON:0000922,6.08e-09,592;UBERON:0002050,6.41e-09,564;UBERON:0000926,7.62e-09,315;UBERON:0004120,7.62e-09,315;UBERON:0006603,7.62e-09,315;UBERON:0000923,3.10e-08,560;UBERON:0010316,3.10e-08,560;UBERON:0005291,3.10e-08,560;UBERON:0006598,3.10e-08,560;UBERON:0010317,3.10e-08,560;UBERON:0002532,3.10e-08,560;UBERON:0002405,1.44e-07,93 | |||
|phase1_expression=3.45188920614058,1.92690471501885,9.72585388262201,0,3.12872766099101,0,0,1.26343974685366,1.04474251279935,0.245733936501509,0,0,0,1.73272894144065,0.662794751455832,31.5992818832334,30.7374209292228,29.2124036154949,27.8121695310589,0.246242116153576,0.612002073732759,0,0.286235987131057,0.684372125364421,0.251085279189606,0,0,0,0.393364276848904,0.383829398097213,1.08371286321253,5.51652734687356,0.6024118375565,2.9580320813343,4.9579008371393,8.38798471675787,0.880801318004542,1.10799081706375,1.00272223735071,0.434021741431704,57.3223614054206,14.2513213048351,46.878753309422,6.25212426752128,8.69114670484262,22.3177336292791,8.36744532860465,11.1015329765893,17.6532631410209,10.0692337312753,16.9066066309206,43.2762480696111,3.44745680736619,7.10033151942209,8.12558919566051,7.71793592124679,10.0975275521403,32.3601817600922,4.89734227793444,16.0464513538047,15.983428144976,18.1418215102694,20.5447567350281,44.3273740554002,8.9964863974861,14.7520158419696,26.1585344578141,8.79370328398601,11.4726242052444,28.8861163457805,7.26479403160043,14.362827803515,23.7346790580663,1.05627643155971,0.850417199860174,0.838634582033504,1.46027220490444,0.901061357049038,0.16072558669708,0.285012743741249,1.79025009479181,0.182664153764634,0,0.546138611262131,0,0.426730222566507,0.400395987036012,0,0.661044872784862,0,0.569212969109448,0,0.764546456250458,0,1.68152568894461,0.263384084775077,0.196709770113833,0.786021525498329,0.205601498999509,2.67498392625085,0.32592226663359,1.4203434172042,0,2.89667187901451,1.17842362989935,1.10766947291811,1.08321545506006,1.66518715643378,0.260118695119756,2.46656856905514,0,2.02862160014537,0.296573126324121,1.07016331235885,0,1.0197840842781,0.383220493601921,0.68725489096526,0.506039384039006,0,0,0,0.150575119077773,0.383959833463255,0,0.473554504088034,0.821127996921047,0.201606743224732,1.33720097891754,0,0,0,7.03244090139417,0.722878304769133,0,1.01392563272577,0.795285947051099,1.45990461090791,2.17430079477356,2.21729397462564,1.40535657109002,1.5062593682237,1.45718115317017,2.59549109949101,2.59637914923747,1.21890816109487,3.85578085504709,0.476981248610684,0,0.74291500265913,0,0,0,1.13061588384802,0.419499436209906,0.825354125820202,0.417989933073621,1.29208379584664,2.13459757612026,0.33472061276467,2.81980521976403,0.760272105718513,1.95249646038536,3.30896772311282,0.81014194788176,1.51809538082936,1.34717623575702,1.68917220724983,1.53316637465883,0,0.183201743930407,0,0,0.872188104285069,9.44246708221105,2.15271869829786,30.85133912948,3.44203944898576,2.83734705758686,7.28880880184999,0,1.48000529050296,3.42332138939743,3.23305612967251,0.653847612453835,0.302714855289863,1.15235184896,0.234321431833797,1.5608003841516,1.71141546463335,0.597794722207204,1.05691048779388,2.42809416552197,1.68540968042698,1.42907919878425,1.10550885580591,0.309977343527296,11.8800285728205,1.97813543422845,0,0.718618141816238,2.52504170931099,0.875829639103749,2.21651292387346,0.877955241761676,0.919463387397059,2.25357088359895,2.60894021268048,0.89694817844431,0.85422955527427,2.33125091275518,3.30100205692843,4.43125875725287,1.54584324027377,1.8611685633159,1.18143432568886,0.389748020644795,1.26216887122057,3.95814564161887,3.07127507955743,1.42003837006646,0.302256294682921,0.508681776931463,10.6293469239813,11.4553370648151,3.72845974005705,0.853815942907168,1.72288698817931,0.813357600086629,2.38420426535352,1.7662459561294,0.72995471815166,4.69348596989448,3.85944562915731,0,3.71494342425583,3.60939740834793,0.473227200159376,1.18009283054671,0.241011029883482,0.55146986366197,0.435758888184812,0.71181185733329,1.34831308160164,0.392442930250692,0.769494313892781,0.738155454624648,1.40241773803446,0.4115740113314,1.47008711385542,2.53510069643662,2.94848165003288,1.77236972004421,0,1.35287282397425,2.05881372358231,5.81676512665715,1.1240175325762,5.83068039987459,9.81437518680414,0.651616610620649,0,2.88662684050547,0.34779121492523,2.7003999674239,0.577465791044295,0.462985512576611,1.90254152234598,2.37061319387782,2.57545848628462,57.614779424451,10.0621834009872,21.9974120187318,12.185398418281,10.2469098201304,11.6255579738757,15.3145073821871,7.55648240136301,1.91691339582606,7.38994856843915,2.90559832243646,3.10992173311158,2.59415916150531,1.76739406796932,0.190493682876507,0,1.17217447210047,1.71072446022705,1.02827492703324,0,2.00078502841405,0.897048674762886,0,2.7868548611961,1.80980402060889,0,0.845302752556,3.45719551560332,4.16029747645464,0.514414748524284,1.41849132023278,0.532844358032199,2.43062589218851,0,0.823240336780769,0.977208552881205,1.42156779497018,0.791951872933429,22.3065139024094,19.1737360892065,16.6954895274035,3.64871341923571,48.7189378689163,23.1917333431335,0.239624855491583,1.14861935834114,4.27910715122155,1.73737568001095,0.61642896765115,2.68591444859843,0,0.197030760201927,0.215627574859517,0.385029108839245,1.52456774533478,0,0,1.67516265334349,0,0.749007023947182,2.99161459204025,0.414415513436035,0.3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| |||
|short_description=p3@LACC1 | |||
}} |
Revision as of 17:32, 11 January 2014
Short description: | p3@LACC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LACC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 7bp_to_ENST00000325686, NM_153218, uc001uzf.3_5end |
EntrezGene: | LACC1 |
HGNC: | 26789 |
UniProt: | Q8IV20Q7Z395 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.54e-13 | 48 |
phagocyte | 3.54e-13 | 48 |
granulocyte monocyte progenitor cell | 6.26e-13 | 67 |
macrophage dendritic cell progenitor | 2.70e-12 | 61 |
monopoietic cell | 4.69e-12 | 59 |
monocyte | 4.69e-12 | 59 |
monoblast | 4.69e-12 | 59 |
promonocyte | 4.69e-12 | 59 |
myeloid lineage restricted progenitor cell | 9.43e-12 | 66 |
classical monocyte | 4.13e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.13e-10 | 42 |
myeloid leukocyte | 1.03e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.23e-11 | 76 |
musculoskeletal system | 2.83e-11 | 167 |
bone element | 5.81e-11 | 82 |
skeletal element | 1.88e-10 | 90 |
skeletal system | 4.07e-10 | 100 |
developing anatomical structure | 4.76e-09 | 581 |
embryo | 6.08e-09 | 592 |
embryonic structure | 6.41e-09 | 564 |
mesoderm | 7.62e-09 | 315 |
mesoderm-derived structure | 7.62e-09 | 315 |
presumptive mesoderm | 7.62e-09 | 315 |
germ layer | 3.10e-08 | 560 |
germ layer / neural crest | 3.10e-08 | 560 |
embryonic tissue | 3.10e-08 | 560 |
presumptive structure | 3.10e-08 | 560 |
germ layer / neural crest derived structure | 3.10e-08 | 560 |
epiblast (generic) | 3.10e-08 | 560 |
immune system | 1.44e-07 | 93 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.09e-07 | 14 |