FFCP PHASE1:Hg19::chr13:32605441..32605473,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10129 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20367 | |||
|TSSclassifier=strong | |||
|UniProt=F8WC26,Q5TBA9,F8W6Q0 | |||
|association_with_transcript=4bp_to_ENST00000380235,ENST00000380250,ENST00000380257,NM_023037,uc001utx.2,uc010tdw.1_5end | |||
|description=CAGE_peak_3_at_FRY_5end | |||
|id=chr13:32605441..32605473,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.75e-10!42;CL:0000766!3.41e-10!76;CL:0000860!4.22e-09!45;CL:0000763!5.18e-09!112;CL:0000049!5.18e-09!112;CL:0000557!1.88e-08!71;CL:0000839!5.52e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.72e-12;33!CL:0002057;4.72e-12;33!CL:0000473;2.16e-07;39!CL:0000234;2.16e-07;39!CL:0000576;4.55e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.74e-11,72;CL:0000860,3.79e-11,42;CL:0002057,3.79e-11,42;CL:0000763,6.42e-10,108;CL:0000049,6.42e-10,108;CL:0000557,2.82e-09,67;CL:0000473,2.18e-08,48;CL:0000234,2.18e-08,48;CL:0000839,3.77e-08,66;CL:0002194,3.28e-07,59;CL:0000576,3.28e-07,59;CL:0000040,3.28e-07,59;CL:0000559,3.28e-07,59;CL:0002009,3.68e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;4.85e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.83e-29!115;UBERON:0001049!5.78e-24!57;UBERON:0005068!5.78e-24!57;UBERON:0006241!5.78e-24!57;UBERON:0007135!5.78e-24!57;UBERON:0003080!1.45e-22!42;UBERON:0002780!1.78e-22!41;UBERON:0001890!1.78e-22!41;UBERON:0006240!1.78e-22!41;UBERON:0002616!2.79e-21!59;UBERON:0001017!4.36e-19!82;UBERON:0005743!5.43e-19!86;UBERON:0001893!7.24e-19!34;UBERON:0000073!1.08e-18!94;UBERON:0001016!1.08e-18!94;UBERON:0000955!1.51e-18!69;UBERON:0006238!1.51e-18!69;UBERON:0001869!2.31e-18!32;UBERON:0002020!3.20e-18!34;UBERON:0003528!3.20e-18!34;UBERON:0002791!3.50e-18!33;UBERON:0003075!1.78e-17!86;UBERON:0007284!1.78e-17!86;UBERON:0002346!1.77e-15!90;UBERON:0002619!3.05e-15!22;UBERON:0003056!3.68e-15!61;UBERON:0000956!2.55e-14!25;UBERON:0000203!2.55e-14!25;UBERON:0001950!5.45e-14!20;UBERON:0002390!1.01e-10!102;UBERON:0003061!1.01e-10!102;UBERON:0002193!7.15e-09!112;UBERON:0000153!9.30e-09!129;UBERON:0007811!9.30e-09!129;UBERON:0000033!1.77e-08!123;UBERON:0002371!5.31e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.46e-20;41!UBERON:0001890;3.46e-20;41!UBERON:0001869;3.61e-20;32!UBERON:0001893;1.30e-19;34!UBERON:0002791;1.51e-19;32!UBERON:0002619;1.95e-19;22!UBERON:0003528;3.28e-19;34!UBERON:0002020;3.28e-19;34!UBERON:0001950;8.54e-18;20!UBERON:0000956;4.47e-17;25!UBERON:0000203;4.47e-17;25!UBERON:0000073;5.24e-15;53!UBERON:0002616;5.24e-15;53!UBERON:0000955;6.46e-10;68!UBERON:0001017;1.06e-09;75!UBERON:0007023;9.95e-09;114!UBERON:0001016;7.78e-08;83!UBERON:0002420;8.07e-07;9!UBERON:0007245;8.07e-07;9!UBERON:0010009;8.07e-07;9!UBERON:0010011;8.07e-07;9!UBERON:0000454;8.07e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.34e-32,114;UBERON:0002780,8.12e-28,41;UBERON:0001890,8.12e-28,41;UBERON:0003080,8.12e-28,41;UBERON:0006240,8.12e-28,41;UBERON:0001049,1.57e-27,56;UBERON:0005068,1.57e-27,56;UBERON:0006241,1.57e-27,56;UBERON:0007135,1.57e-27,56;UBERON:0000073,9.72e-26,53;UBERON:0002616,9.72e-26,53;UBERON:0001893,4.60e-23,34;UBERON:0001017,1.06e-22,81;UBERON:0001869,2.21e-22,32;UBERON:0003528,3.09e-22,34;UBERON:0002020,3.09e-22,34;UBERON:0002791,1.05e-21,32;UBERON:0001016,1.62e-21,89;UBERON:0000955,3.53e-21,68;UBERON:0006238,3.53e-21,68;UBERON:0003075,3.74e-21,82;UBERON:0007284,3.74e-21,82;UBERON:0002619,1.39e-19,22;UBERON:0003056,2.43e-19,61;UBERON:0002346,4.38e-19,86;UBERON:0001950,6.23e-18,20;UBERON:0000956,4.41e-17,25;UBERON:0000203,4.41e-17,25;UBERON:0010371,3.45e-13,104;UBERON:0002390,4.41e-12,98;UBERON:0003061,4.41e-12,98;UBERON:0011216,1.53e-10,223;UBERON:0010314,1.67e-10,132;UBERON:0002193,3.95e-10,108;UBERON:0004121,2.87e-08,171;UBERON:0000924,2.87e-08,171;UBERON:0006601,2.87e-08,171;UBERON:0000923,6.98e-08,560;UBERON:0010316,6.98e-08,560;UBERON:0005291,6.98e-08,560;UBERON:0006598,6.98e-08,560;UBERON:0010317,6.98e-08,560;UBERON:0002532,6.98e-08,560;UBERON:0002050,8.01e-08,564;UBERON:0002371,2.23e-07,76;UBERON:0000178,4.38e-07,15;UBERON:0000179,4.38e-07,15;UBERON:0000463,4.38e-07,15;UBERON:0002420,4.85e-07,9;UBERON:0007245,4.85e-07,9;UBERON:0010009,4.85e-07,9;UBERON:0010011,4.85e-07,9;UBERON:0000454,4.85e-07,9 | |||
|phase1_expression=0,0,1.12763523276777,1.0007329835313,2.23480547213644,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0.247532705920093,0.994192127183747,0.672325146451775,0,0,0,0.246242116153576,0.816002764977012,0.313454721478088,1.14494394852423,0.410623275218653,0.753255837568817,0.382067028739756,0.328402357799783,0.393553906568396,1.18009283054671,0.767658796194425,1.85779347979291,0,0,0,0.697204805222715,1.70603078984906,6.16560922603179,3.87796785972314,4.41197784434312,3.25516306073778,0.895661896959697,0,0.515151135268373,3.92575244704825,1.13362783106643,5.33684934613196,4.41615170120801,2.05583944010913,4.33588919253145,2.01384674625505,1.7931249457037,4.7296445977717,2.41321976515633,3.87290810150296,2.70852973188684,3.20011977222428,3.547779950752,3.82029923556644,2.14258724659632,1.60464513538047,2.55734850319616,0.989553900560148,0.598390972864896,3.83602275479425,7.54544020434318,4.53908179752912,4.35975574296902,2.51248665256743,0,1.3031330682307,1.81619850790011,3.68277635987565,9.49387162322653,0.633765858935825,0.425208599930087,0.628975936525128,1.79725809834392,1.65194582125657,2.73233497385036,0,0.79566670879636,0,0,1.09227722252426,0,0,0,0,0.661044872784862,0,1.1384259382189,1.17447437874188,0.382273228125229,18.5039860010636,8.96813700770458,4.21414535640123,0.590129310341499,0.393010762749165,1.02800749499755,0,0,0,0,1.6711568532776,0,0,0,0.128091319725675,1.04047478047903,0.493313713811028,2.48715016007264,1.15921234294021,1.4828656316206,2.67540828089713,2.09071047609954,0,0,0,0.253019692019503,0.318565414324097,0.651083453856419,0,0.602300476311091,0.383959833463255,0,0.710331756132051,0,0.604820229674197,0.267440195783507,0.868946423296794,0,0,0.511450247374121,1.44575660953827,0,0.434539556882471,0.795285947051099,1.45990461090791,0.661743720148475,1.10864698731282,1.14185221401064,2.5540919722054,0,0,0,0.696518949197069,0.132957960518865,1.19245312152671,0.571994910780128,1.11437250398869,0.198762407366705,0,0,0.56530794192401,0,0,0,0,1.42306505074684,1.33888245105868,0,0,0.24406205754817,0,0.81014194788176,0.803697554556718,0.673588117878509,0.788280363383256,0,0,0,13.1780417436063,3.87780264148325,0,1.49091585508596,0.633152558322899,0.529636723252875,0.860509862246441,0,1.12135520028461,1.06748995729705,0.49333509683432,1.8672662123986,0,0.326923806226917,0.454072282934794,0,0.234321431833797,0,0,0.149448680551801,0,0,0,0.204154171254893,0.245668634623536,0.309977343527296,1.18800285728205,0.989067717114227,0.910161361938026,0,0.168336113954066,0,0,0,0.30648779579902,1.05166641234618,0.226864366320042,0,0.640672166455702,0.423863802319124,0,0.206105058476878,1.28820270022815,1.30281799432113,0.337552664482532,0,0,0.552299391853796,0.80823028409406,0.355009592516614,0,0.67824236924195,0,0,0,0.609868530647977,0.927708378250397,0.580969714347592,0.414644220061482,0.504641701751257,1.45990943630332,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0.435758888184812,0.474541238222193,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.245976877086227,0.514703430895577,0.109750285408626,0,0.301586917234893,0,0.325808305310325,0,0,1.27523445472584,1.99594780200897,0,0,0.190254152234598,0,0,0,0,0.743155811443641,0,0,0,0,0,0.383382679165211,0.985326475791887,2.99364675644969,9.74442143041629,8.79131715843465,7.06957627187728,0,0,0,0,0,0,0,0.112131084345361,1.30788020649984,0,3.87815147273333,0,0,5.05282421511254,3.12022310734098,0,0,0,1.14382394926518,0,0.823240336780769,0,0.355391948742546,0,0.301439377059586,0,0.99972991182057,0,0.502257091432126,0,0.718874566474748,3.44585807502342,0,0.144781306667579,0,0.179060963239896,0.112085143993527,0.788123040807709,1.07813787429759,0.641715181398742,0,1.30139853857622,3.09315525111078,3.01529277601828,0,5.24304916763028,5.9832291840805,19.0631136180576,0.49076596687656,0,0.542530047399471,0,0,0,0.819989904948992,2.40756879782175,0,0,1.32845119707087,0.184369168541703,1.30325421702124,0,0.343143423810856,0.82707210449155,2.15714200818617,1.70764092485511,0,0,0,1.24053903909388,0.767309866440312,0.280660094433074,1.79394808957981,3.07024349440022,1.28683136914886,1.48418066444991,0,0.355123450626254,0.328508624055237,0,0,0.362578348774867,0.802025881213139,0.276242966807689,1.60740227430449,2.54927635209404,2.75361271414791,0,0.0770153371044148,0,0,0,0,0,0,1.54227252690289,0.270946437543853,0.501689773854853,0,0,0,0,0,0,1.31205858279882,0.976135183992909,1.54561517471583,0.183138929636687,0.82509499920588,0,0,3.21367859688319,0.290012154876366,0,0,0,0.214840489736547,0.435050081742686,0.0852266274161009,2.93805717634233,0.165284915360978,0.192190067365106,0,0,0.464845549297286,0.31481234683064,0,0,1.06461206063404,0,0,0.286249773483982,0.372158369359667,1.2655176988749,2.09693213316207,0,0,0.318203247925937,0.78494864019923,4.8565563547495,3.29444435683266,1.53156123049392,0.202182481573316,0,0.421258456238981,0.975267478179181,0.487426979262569,0,4.36799716505554,3.81794666275024,1.13008116620243,0,0,0,0,1.31178950409327,0.405820753925408,0,0.563391205064483,1.14729081763241,1.08073945114433,0.35667105148125,1.41904425628239,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0.847294206991012,0,0,0,0,2.02979043692868,1.52927441428475,1.70894156152249,1.90585420366231,1.64544909234478,1.94541993357815,2.70015718619057,3.96562588147135,0,0.962479855263359,3.43056302373444,0.557409525377156,0.144269212976445,2.13425530045242,0.159426272728822,0.997896857164083,0.766021480529467,2.11673582723883,0.324621940274555,1.96558024679421,0,1.41011906195721,0,0,2.40882112655549,5.04499267977619,5.53600108997424,4.46556948182494,5.22309299324379,4.47352215784832,4.83862510964535,0.781552381608161,0.278406173895242,0,0.540911356951966,0,0,0,0.293016358543788,0,0.334330152832435,0,0.23874448473769,0,0,1.9882952955326,4.22008249231538,0.779160935160341,0,0.422250816255987,5.37969568277888,1.93398740871803,0.251932747854276,0.715880777515084,0,0,0.269605053441981,0,5.11572370226872,3.64980600856654,7.18449277040819,0,3.87733098438087,3.71072392647405,1.99613798001194,0,0.174919999992391,1.44999915086959,0,0,0.236387681767936,0,0.291604613383254,1.04174996959975,5.31444831488303,8.07996138790233,1.52581736317083,2.10100593869327,0.295547618953547,3.07139556015562,0.10893846351899,1.39423744278603,3.61666214967846,0.569710279235006,0,0,0.217294743844016,0,1.64875668123352,0,0,1.41282230755522,1.66211681900156,0,0,0,0,1.43042921082341,0.210998064528027,0,3.53382678584852,0,0.995261931078505,1.59223616106011,1.22206028986725,7.70954934569617,6.67245270311115,7.83164621290915,2.96564985114979,2.40773294189637,3.04543779442941,2.18945747058799,0.782658475728359,0,1.57833761139756,6.04953580243319,11.3246921803281,2.14834370736859,0.751617097072463,0.207376382794494,0,0,0.313932918407225,0,0,0,0,0,0,3.66926003308263,0,0.0967563312890851,0.0730893170861856,0.164230914106418,1.06687918137261,0.176512253383001,1.80784592624426,0.274083849293502,0,7.40736312683781,0.195551382734803,0,3.84215390530835,0.999048047910651,0.144090417154106,0.114536596165916,0.857974989309823,0,0,0,0,0.104602846312333,4.38592335836184,0.288950589901519,3.00210144354895,3.69644523008381,22.994385852055,0.859530882839914,0.262887354279314,3.90995361781156,3.20824593616357,1.43574604915363,0.199679000498991,0.858452096273142,0.446342914883745,3.76227445925667,1.44119953416961,0,1.6544468284517,0.988990300573997,1.88729922791718,0.393709926058995,0,5.56660782866512,8.71701799114084,0.321506296930038,1.37539436597234,0,1.799791132412,0.77380195455795,10.5704228584963,0,1.65491985328316,3.93409411012486,0,1.97216073266129,0.191915197319445,2.1440859791201,0,0,0,0,0.326587360109409,1.19730191562487,0.656740165994712,0.340776043570843,1.24643300672138,0.732761168390412,0,1.29282956361551,3.04134984008187,1.02652102730598,0,1.28144895081234,3.61569901729232,1.24271716604159,0,0.395223263795889,3.28840015628419,0,0,0,0,0,2.19875734750328,7.08854543973589,4.27091927156871,5.50840095108599,0.573409195690071,3.21694249456872,3.84997698236577,0,0,0.303298235083296,0,0,1.40500471742064,2.02889440055155,0.149254802886874,0.233713309847224,1.10961172300523,0.189403005275089,0.50313580350515,0.889811221596536,0.457680136793847,1.96600200892211,0.15543720058278,1.03498604992744,0.796483835818512,0.449803112163605,0.931577741257556,2.07353103920428,0.265841714557995,3.1304703708704,1.05180326298053,0,0,1.81848659202559,0.644463342254931,0.928067519756987,3.18476710958893,0,1.03018711554838,0.336749488765919,0,0,0.428883182749851,1.56596575179127,0.680117776536817,0.926089897295336,0.244736704506468,0,0,1.31570429747224,0.353378291891762,0,0.168942440653073,0.256241518587947,0.345430341731199,0.303859956177382,6.49814649913135,1.7537427795545,0.797189041880179,2.28991551958182,0.327609848846413,0,0,0.79994958341972,0.746842107858986,0.516644938982447,0,0.552317850755522,0,0,2.68578179737669,3.77386839888386,1.72992536041486,0.873677105536111,0,0.425149840203366,0,0,0.318004350653419,1.26178792002005,3.20228299314188,0.705351887381368,4.593682160298,11.4328020671698,8.5017945795351,5.74681892605745,6.35860729146341,5.04143392443436,8.99044282034832,5.97459888837849,1.42769420259154,0.490738592505128,0,0,0.115525666150338,0,0,0.994581110581374,2.55715116387475,0,0.781514011233092,0,0.163771917510097,0,9.65787460043044,5.46754669029693,5.99391709853434,8.3708869455957,9.84554656232795,0.548257766857182,3.96968942711435,0,2.55524855279191,6.96412386641773,8.07080933325178,7.89055285507621,7.05752793189023,0.709618961301111,1.26757386311357,0.171488009437418,3.05863798395743,7.62964173329049,0,0,3.06123062117005,7.69866390588409,0.560544326627578,4.56579360254748,0.215927591218621,0,3.4308741204795,0,0,2.78173235684127,5.61197955311177,0,0,0,1.29068207646083,0.354996002191696,0.0852134047591577,2.9637093513365,0.9164274741762,0,0,0,0.294450700845729,0,0,0.307988420568741,0,0.485710993059139,3.27515248846948,1.59160620129095,0.475680363110274,2.03302947670128,1.97892930141772,6.03851374266694,0.926089897295336,0.218559560503957,4.70317296361523,3.18692818280077,3.29947165942276,2.94462700672418,3.26751040359795,5.4945244585842,0.509781344063451,1.69171052363736,2.2560260790752,0,0,0.352894871715692,0,0,1.83491713361816,1.72007499781742,0.157771562193185,7.47906392100062,8.72701380680755,2.645134202577,0,0.924351257262837,0,2.01866279736126,0.546327859818478,3.04076402427449,0.203977659483963,0.534434810531121,0.827054095813604,0.250707539292375,0.909344378618873,1.07185652062471,2.48750831837634,2.99955687999496,2.34557380091079,1.1903221573187,1.61472274590015,3.60033342915976,0.112131862580613,0.25458863311266,0,1.08858373948481,1.71116650542641,0.336760265072938,1.2192774916755,3.32660356546013,0.162806537221949,0,1.9307228228694,0.179650404213174,7.03922827210363,5.37862354404612,3.66206560484165,1.33151354837103,1.20764276154616,0.320568492303233 | |||
|short_description=p3@FRY | |||
}} |
Revision as of 17:14, 11 January 2014
Short description: | p3@FRY |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FRY_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_ENST00000380235, ENST00000380250, ENST00000380257, NM_023037, uc001utx.2, uc010tdw.1_5end |
EntrezGene: | FRY |
HGNC: | 20367 |
UniProt: | F8WC26Q5TBA9F8W6Q0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.74e-11 | 72 |
classical monocyte | 3.79e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.79e-11 | 42 |
myeloid cell | 6.42e-10 | 108 |
common myeloid progenitor | 6.42e-10 | 108 |
granulocyte monocyte progenitor cell | 2.82e-09 | 67 |
defensive cell | 2.18e-08 | 48 |
phagocyte | 2.18e-08 | 48 |
myeloid lineage restricted progenitor cell | 3.77e-08 | 66 |
monopoietic cell | 3.28e-07 | 59 |
monocyte | 3.28e-07 | 59 |
monoblast | 3.28e-07 | 59 |
promonocyte | 3.28e-07 | 59 |
macrophage dendritic cell progenitor | 3.68e-07 | 61 |