FFCP PHASE1:Hg19::chr12:50616382..50616505,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51474 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24636 | |||
|TSSclassifier=strong | |||
|UniProt=B4DN52,Q9UHB6 | |||
|association_with_transcript=0bp_to_ENST00000420992,ENST00000552783,NM_001113547,uc001rwi.3_5end | |||
|coexpression_cluster_id=C3288 | |||
|description=CAGE_peak_1_at_LIMA1_5end | |||
|id=chr12:50616382..50616505,- | |||
|ontology_enrichment_celltype=CL:0000055!2.45e-27!180;CL:0000220!6.81e-20!246;CL:0002321!1.95e-19!248;CL:0000057!5.90e-16!75;CL:0000144!6.62e-14!625;CL:0000548!2.42e-13!679;CL:0000004!2.42e-13!679;CL:0000255!2.42e-13!679;CL:0000012!9.09e-13!682;CL:0000222!8.23e-12!119;CL:0002371!4.72e-11!591;CL:0000076!1.28e-09!62;CL:0000680!5.27e-09!57;CL:0000056!5.27e-09!57;CL:0000355!5.27e-09!57;CL:0002620!5.42e-09!23;CL:0000187!3.52e-08!54;CL:0000393!6.87e-08!60;CL:0000211!6.87e-08!60;CL:0000221!1.19e-07!71;CL:0000077!1.21e-07!19;CL:0000003!2.82e-07!722;CL:0000192!3.24e-07!42;CL:0000514!3.24e-07!42;CL:0000359!9.38e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.35e-09;23!CL:0000077;1.04e-07;19!CL:0000057;9.65e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.08e-20,250;CL:0000057,1.69e-16,76;CL:0000222,4.94e-12,121;CL:0000076,7.50e-10,63;CL:0000680,2.53e-09,58;CL:0000056,2.53e-09,58;CL:0000355,2.53e-09,58;CL:0002620,5.35e-09,23;CL:0000187,1.72e-08,55;CL:0000393,3.45e-08,61;CL:0000211,3.45e-08,61;CL:0000221,8.31e-08,72;CL:0000077,1.06e-07,19;CL:0000192,1.57e-07,43;CL:0000514,1.57e-07,43;CL:0000359,9.29e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!9.81e-14!95;UBERON:0000914!2.25e-11!83;UBERON:0002329!2.25e-11!83;UBERON:0003077!2.25e-11!83;UBERON:0003059!2.25e-11!83;UBERON:0007282!2.25e-11!83;UBERON:0009618!2.25e-11!83;UBERON:0007285!2.25e-11!83;UBERON:0000486!3.44e-11!82;UBERON:0002199!1.28e-10!45;UBERON:0002416!1.28e-10!45;UBERON:0002097!6.00e-10!40;UBERON:0004290!2.58e-08!70;UBERON:0004872!2.75e-08!84;UBERON:0001134!3.78e-08!61;UBERON:0002036!3.78e-08!61;UBERON:0003082!3.78e-08!61;UBERON:0002049!6.42e-08!79;UBERON:0007798!6.42e-08!79;UBERON:0002385!8.22e-08!63;UBERON:0001015!8.22e-08!63;UBERON:0000383!8.22e-08!63;UBERON:0001637!2.14e-07!42;UBERON:0003509!2.14e-07!42;UBERON:0004572!2.14e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;4.33e-08;41!UBERON:0002199;7.36e-08;46!UBERON:0002416;7.36e-08;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.34e-15,99;UBERON:0000486,1.65e-11,83;UBERON:0002199,8.10e-11,46;UBERON:0002416,8.10e-11,46;UBERON:0002097,3.80e-10,41;UBERON:0002329,1.31e-08,71;UBERON:0003059,1.31e-08,71;UBERON:0007282,1.31e-08,71;UBERON:0004290,1.31e-08,71;UBERON:0009618,1.31e-08,71;UBERON:0007524,1.50e-08,73;UBERON:0001134,1.89e-08,62;UBERON:0002036,1.89e-08,62;UBERON:0003082,1.89e-08,62;UBERON:0003077,3.37e-08,72;UBERON:0007285,3.37e-08,72;UBERON:0002385,4.17e-08,64;UBERON:0001015,4.17e-08,64;UBERON:0000383,4.17e-08,64;UBERON:0004872,6.21e-08,83;UBERON:0002049,1.45e-07,78;UBERON:0007798,1.45e-07,78;UBERON:0001637,2.12e-07,42;UBERON:0003509,2.12e-07,42;UBERON:0004572,2.12e-07,42;UBERON:0007503,2.84e-07,78 | |||
|phase1_expression=123.541297903979,138.737139481357,158.573704607968,135.098952776726,72.8546583916479,119.510377801751,121.583941520789,74.5429450643661,104.996622536335,28.7508705706765,9.76921635161399,68.3721494767439,48.5331239940355,150.252352493497,113.006505123219,110.933649164543,97.6365135398843,98.5918622022954,88.8037693798723,20.4380956407468,21.0120711981581,15.0458266309482,123.367710453485,123.597605840814,161.322291879322,51.1969818511273,63.7921580026078,66.4318994287453,1.57345710739562,7.67658796194425,3.09632246632152,214.22514530359,126.506485886865,147.901604066715,1.31694240986513,1.9903692548239,12.9184193307333,2.76997704265939,2.00544447470142,1.95309783644267,1.34349284543955,1.6194683300949,2.31818010870768,0.145398238779565,0,0.242584061187816,0.929716147622738,0.411167888021826,0.619412741790207,2.8769239232215,1.2808035326455,1.6553756092201,1.03423704220986,0.645484683583826,0,0.376484679085209,1.09162460023138,0.674170453335254,0.918251677112708,0.641858054152187,0.639337125799041,0.329851300186716,0,0.426224750532694,0,2.26954089876456,0.622822248995575,1.50749199154046,0,1.08594422352558,6.05399502633369,2.20966581592539,0.316462387440884,0.845021145247767,0.212604299965044,0,0.786300418025466,0.150176892841506,0.64290234678832,0.285012743741249,0.99458338599545,0.365328307529268,0,0.546138611262131,0,0.853460445133014,1.20118796110804,0,0,0,0.569212969109448,1.76171156811282,0.764546456250458,9.25199300053181,3.36305137788922,10.271979306228,9.24535919535015,5.10913991573914,10.2800749499755,20.229565942272,6.51844533267181,10.8892995318989,9.74133642039557,61.0529303730751,17.0871426335406,18.1657793558569,17.873055008491,47.5218796182255,49.6826707678735,18.9103590294228,18.7918012094377,19.9964129157186,8.30404753707538,7.75868401460168,7.31748666634838,37.8453204609871,13.0294967824653,8.93431358254838,14.1691027530922,15.6097053018807,11.7195021694155,7.60361635558699,14.9069367886995,21.7577238962511,13.742379920758,21.5467299360055,18.8859439291841,8.87069670188823,5.88368430723716,4.05508330871837,216.988111019426,65.0579833912527,124.282410111911,331.801141889032,254.679658603032,310.406090133045,144.7420423633,111.926020169606,65.0399542088787,81.8181476636861,57.9709585574632,14.0147610782553,40.0724817121796,51.5390375470357,40.5684242068354,39.3533206296344,44.0090849317444,1.43094374583205,1.14398982156026,0.74291500265913,68.77179294888,41.291260565094,44.7811247073797,83.6655754047534,52.0179300900283,56.949434681594,71.0582886225156,67.4467741431948,81.1147078925699,52.8858568168179,41.4914196622421,56.2601358231699,20.2571507764981,105.519304059264,47.7983749250238,71.8862812686842,32.5567590307946,35.4726163522465,39.8623257411296,25.6301728083395,30.594691236378,0,3.87780264148325,61.0531672999548,228.110125828151,239.331667046056,500.241885112341,263.029181226662,137.256663910764,173.810056044115,105.681505772408,78.686947945074,172.410913611471,77.9974791283494,52.7981947056472,68.2621998678641,95.0690275391998,44.9897149120889,80.5372998222227,43.3558584373781,61.4234077067902,35.5826530890608,33.9933183173076,29.0733169873654,149.440853358582,45.3258630880424,117.274761634494,392.040942903078,238.11805289525,39.1369385633351,23.7143986799359,45.9557591094601,45.543141233395,167.900853983415,355.132895292598,241.818870885426,248.643987490418,133.963408311985,698.902020643806,536.242603323423,501.430878143523,576.174904482052,574.827008092012,546.455585436779,337.243743672841,501.940812085526,378.250454035773,590.442597956984,471.479580845857,213.372795000832,459.737422309016,306.185626513799,290.965976404797,463.826047591912,491.215763184093,506.496915456981,10.6117124332748,14.3132149787204,13.8270792014727,11.9210213267676,18.4194221139209,21.533664185474,122.030635217256,92.6266950997755,84.2623020250131,169.958661659704,95.2880915803853,61.5195360207188,55.2957783456174,45.7920956778616,58.6763934936336,57.7380526844876,45.0814176311084,39.5055732909282,43.5611652578268,34.2424969682287,9.59602091012043,8.41450642820675,43.6268452011284,32.3419165048192,0,3.9313088667105,10.0434284135839,3.97316789473185,5.78045661152634,115.808271951505,464.024206707669,202.323155863715,394.576216715651,311.004587287501,30.3001723938602,10.3993478527958,75.0522978531421,7.53547632337999,185.153510809891,106.398071999911,75.0036530374109,89.990214006965,0,0,5.66299114001014,39.0787122782527,22.7405678301754,311.1963288361,513.353383775715,425.892392116129,460.599482260749,305.746903316688,133.800555028659,12.3165809473986,8.01240749520357,6.84182781284548,4.17947864909188,3.53478813593864,21.5892840593375,35.5249235769198,18.7547915536075,47.9002848863575,73.9329672536896,110.526245286562,63.7392944766189,44.8524337381443,68.8816908756583,89.1793555582752,244.452814497958,60.80159579482,63.3977064417,154.51004573581,116.48832934073,31.3792996599813,17.0218958427934,27.9743287966904,128.680194292333,29.8441882965294,57.6268235746538,91.8576039708333,103.4190570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| |||
|short_description=p1@LIMA1 | |||
}} |
Revision as of 13:24, 11 January 2014
Short description: | p1@LIMA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIMA1_5end |
Coexpression cluster: | C3288_Fibroblast_Urothelial_Preadipocyte_mesothelioma_Mallassezderived_Mesothelial_alveolar |
Association with transcript: | 0bp_to_ENST00000420992, ENST00000552783, NM_001113547, uc001rwi.3_5end |
EntrezGene: | LIMA1 |
HGNC: | 24636 |
UniProt: | B4DN52Q9UHB6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.08e-20 | 250 |
fibroblast | 1.69e-16 | 76 |
mesodermal cell | 4.94e-12 | 121 |
squamous epithelial cell | 7.50e-10 | 63 |
muscle precursor cell | 2.53e-09 | 58 |
myoblast | 2.53e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.53e-09 | 58 |
skin fibroblast | 5.35e-09 | 23 |
muscle cell | 1.72e-08 | 55 |
electrically responsive cell | 3.45e-08 | 61 |
electrically active cell | 3.45e-08 | 61 |
ectodermal cell | 8.31e-08 | 72 |
mesothelial cell | 1.06e-07 | 19 |
smooth muscle cell | 1.57e-07 | 43 |
smooth muscle myoblast | 1.57e-07 | 43 |
vascular associated smooth muscle cell | 9.29e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.34e-15 | 99 |
multilaminar epithelium | 1.65e-11 | 83 |
integument | 8.10e-11 | 46 |
integumental system | 8.10e-11 | 46 |
skin of body | 3.80e-10 | 41 |
somite | 1.31e-08 | 71 |
presomitic mesoderm | 1.31e-08 | 71 |
presumptive segmental plate | 1.31e-08 | 71 |
dermomyotome | 1.31e-08 | 71 |
trunk paraxial mesoderm | 1.31e-08 | 71 |
dense mesenchyme tissue | 1.50e-08 | 73 |
skeletal muscle tissue | 1.89e-08 | 62 |
striated muscle tissue | 1.89e-08 | 62 |
myotome | 1.89e-08 | 62 |
paraxial mesoderm | 3.37e-08 | 72 |
presumptive paraxial mesoderm | 3.37e-08 | 72 |
muscle tissue | 4.17e-08 | 64 |
musculature | 4.17e-08 | 64 |
musculature of body | 4.17e-08 | 64 |
splanchnic layer of lateral plate mesoderm | 6.21e-08 | 83 |
vasculature | 1.45e-07 | 78 |
vascular system | 1.45e-07 | 78 |
artery | 2.12e-07 | 42 |
arterial blood vessel | 2.12e-07 | 42 |
arterial system | 2.12e-07 | 42 |
epithelial vesicle | 2.84e-07 | 78 |