FFCP PHASE1:Hg19::chr12:50135941..50135973,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7009 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11723 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=347bp_to_ENST00000542631,uc001ruz.2_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_9_at_TMBIM6_5end | |||
|id=chr12:50135941..50135973,+ | |||
|ontology_enrichment_celltype=CL:0000860!4.95e-12!45;CL:0000012!6.16e-12!682;CL:0002057!8.83e-12!42;CL:0000548!2.24e-11!679;CL:0000004!2.24e-11!679;CL:0000255!2.24e-11!679;CL:0000048!1.20e-10!430;CL:0000723!7.49e-10!436;CL:0000839!2.49e-09!70;CL:0000144!2.56e-09!625;CL:0000034!3.08e-09!444;CL:0000557!4.71e-09!71;CL:0000766!6.97e-09!76;CL:0002371!4.06e-08!591;CL:0000134!4.94e-08!358;CL:0000063!7.46e-08!578;CL:0000763!7.98e-08!112;CL:0000049!7.98e-08!112;CL:0002194!1.46e-07!63;CL:0000576!1.46e-07!63;CL:0000040!1.46e-07!63;CL:0000559!1.46e-07!63;CL:0002320!1.93e-07!365;CL:0002009!1.95e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.42e-19;33!CL:0002057;4.42e-19;33!CL:0000473;1.13e-12;39!CL:0000234;1.13e-12;39!CL:0000576;6.60e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.60e-15,42;CL:0002057,8.60e-15,42;CL:0000473,2.98e-12,48;CL:0000234,2.98e-12,48;CL:0000766,4.65e-12,72;CL:0000557,1.34e-11,67;CL:0000839,3.38e-11,66;CL:0000763,9.77e-10,108;CL:0000049,9.77e-10,108;CL:0002009,1.21e-09,61;CL:0002194,1.73e-09,59;CL:0000576,1.73e-09,59;CL:0000040,1.73e-09,59;CL:0000559,1.73e-09,59;CL:0000048,5.54e-09,427;CL:0000134,1.32e-08,354;CL:0000723,2.51e-08,433;CL:0000034,3.59e-08,441;CL:0002320,8.15e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;5.32e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!7.86e-10!86;UBERON:0002405!1.03e-09!115;UBERON:0000926!2.91e-09!448;UBERON:0004120!2.91e-09!448;UBERON:0006603!2.91e-09!448;UBERON:0000055!7.38e-09!69;UBERON:0002204!1.06e-08!167;UBERON:0001981!1.53e-08!60;UBERON:0007500!1.53e-08!60;UBERON:0004537!1.53e-08!60;UBERON:0006965!1.53e-08!60;UBERON:0002371!2.16e-08!80;UBERON:0004765!3.21e-08!101;UBERON:0001434!3.21e-08!101;UBERON:0001637!5.42e-08!42;UBERON:0003509!5.42e-08!42;UBERON:0004572!5.42e-08!42;UBERON:0003914!5.48e-08!118;UBERON:0002384!3.16e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;9.11e-07;42!UBERON:0003509;9.11e-07;42!UBERON:0004572;9.11e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.41e-11,82;UBERON:0002371,2.15e-10,76;UBERON:0003081,4.41e-10,203;UBERON:0004765,3.03e-09,90;UBERON:0001637,1.16e-08,42;UBERON:0003509,1.16e-08,42;UBERON:0004572,1.16e-08,42;UBERON:0001434,2.92e-08,100;UBERON:0007500,7.12e-08,59;UBERON:0001981,7.12e-08,59;UBERON:0004537,7.12e-08,59;UBERON:0006965,7.12e-08,59;UBERON:0002384,7.22e-08,371;UBERON:0002405,1.30e-07,93;UBERON:0004573,2.21e-07,33;UBERON:0004571,2.21e-07,33;UBERON:0002390,2.34e-07,98;UBERON:0003061,2.34e-07,98;UBERON:0002204,2.80e-07,167;UBERON:0000926,4.38e-07,315;UBERON:0004120,4.38e-07,315;UBERON:0006603,4.38e-07,315 | |||
|phase1_expression=1.2717486548939,2.5692062866918,2.25527046553554,1.0007329835313,2.68176656656373,0.872338524100369,7.59899634504932,0,0.261185628199839,1.22866968250754,0.697801167972428,0.218441372130172,0.263766978228454,0.247532705920093,0.331397375727916,2.6893005858071,0,0,0.487932798790507,0.61560529038394,0.612002073732759,0.313454721478088,0.286235987131057,0.410623275218653,0.87879847716362,0.0764134057479513,0.0821005894499457,0,1.96682138424452,1.53531759238885,1.54816123316076,0,0.30120591877825,0,0.0774672005803016,0.142169232487422,1.17440175733939,1.66198622559563,0.601633342410425,0.651032612147555,0,0,0,1.59938062657521,5.66813915533214,6.79235371325885,0.697287110717054,4.93401465626191,6.50383378879718,4.02769349251011,3.07392847834921,4.7296445977717,1.03423704220986,1.93645405075148,5.41705946377367,3.9530891303947,9.82462140208245,6.06753408001728,3.36692281607993,7.06043859567406,5.75403413219137,3.29851300186716,5.18605509816243,4.68847225585964,5.22376629531451,9.64554881974938,3.11411124497787,3.51748131359441,7.82224377630302,3.9093992046921,2.42159801053347,4.78760926783834,4.43047342417238,0.422510572623884,0.850417199860174,0.628975936525128,0,0.150176892841506,0.32145117339416,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,2.80254281490768,0.263384084775077,0,0,0,0.167186495390678,0,0,0,0.222820913770347,0,0,0,0.384273959177026,0.390178042679635,0.164437904603676,0.552700035571697,0.289803085735052,0.14828656316206,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0.604820229674197,1.33720097891754,0.144824403882799,0,0.670700859703636,1.02290049474824,1.44575660953827,0.50133791063589,0.724232594804119,2.3858578411533,0.486634870302636,0.0945348171640679,0,0.087834785693126,9.8889202000773,0,0.370784442784429,0.649094787309367,1.0447784237956,0.664789802594326,0,0,0,2.38514888840046,2.58070378531837,1.04142150482278,1.69592382577203,1.67799774483962,0.825354125820202,2.29894463190492,0.258416759169329,0.35576626268671,1.00416183829401,2.01414658554573,0,0.24406205754817,2.94130464276695,1.62028389576352,1.16089646769304,0.898117490504679,1.68917220724983,1.53316637465883,0.949265659568129,1.46561395144326,1.31780417436063,3.87780264148325,0,4.47274756525787,1.01304409331664,0.662045904066094,1.43418310374407,1.06400514659507,1.12135520028461,0,0.98667019366864,0,0.808264032418128,0.980771418680752,0.302714855289863,0,3.04617861383936,0.936480230490962,0.570471821544449,0.448346041655403,1.29177948508141,1.61872944368132,0.98315564691574,0.816616685019573,0.368502951935304,0.309977343527296,0,0.741800787835671,0.910161361938026,2.15585442544872,0.168336113954066,0.250237039743928,1.38532057742091,1.31693286264251,0.612975591598039,0.751190294532984,1.58805056424029,2.33206526395521,0.640672166455702,0.211931901159562,0.900273288253207,0.515262646192195,0.515281080091258,0.930584281657949,0.843881661206331,1.46155507741798,0.252433774244115,0.184099797284599,0.161646056818812,0.710019185033229,1.0075209822764,0.67824236924195,0,0.545492241181669,0,0,0,0.116193942869518,0.207322110030741,0,0,1.56449532329816,0,1.38134921352481,0,2.16563844500876,2.12952240071719,2.19160097101532,1.20505514941741,1.98529150918309,1.08939722046203,0.949082476444386,1.75280700608214,2.5508790466295,1.53898862778556,3.69077727312324,2.80483547606892,0.8231480226628,1.47008711385542,10.1404027857465,7.86261773342101,5.90789906681404,1.32438929824395,0.491953754172454,0.514703430895577,0.109750285408626,0,0,0.462942225792648,1.95484983186195,1.03993478527958,0,0,0,0.866198686566443,0.925971025153221,0.951270761172991,0,0,0,0.936017060556951,0.445893486866185,0.93733833986777,0.671928512795438,0,0.895585227028483,0.871901815541886,0.383382679165211,3.4486426652716,0.704387472105808,3.10992173311158,2.16179930125442,2.5248486685276,0.444485260045183,0.763976851116555,0,0,0.616964956219941,0.600686115687835,0,1.23344192779897,0.43596006883328,0.66004457238855,0.258543431515556,0,0,0,0,0.514414748524284,0,1.0656887160644,0.285955987316295,0,0,1.30294473717494,0,0.791951872933429,1.20575750823834,4.35766729300147,0.699810938274399,1.2162378064119,0,0,0.718874566474748,1.14861935834114,0,1.30303176000821,1.02738161275192,0.358121926479791,2.01753259188349,0.985153801009636,0.862510299438069,1.15508732651774,1.27047312111232,0,0.773288812777695,0.837581326671744,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0,1.03985430765404,1.42743191037729,0.315404830067869,0.35142424497814,0,0,1.03473071292505,1.99267679560631,0.921845842708516,0.868836144680828,0.391602314925481,0.343143423810856,0,0.215714200818617,0.213455115606889,0,0,0,2.72918588600655,0,1.68396056659844,1.66580894032411,1.02341449813341,1.60853921143608,0,1.54209693802656,1.06537035187876,1.47828880824856,0,2.09178681227927,0.483437798366489,0.200506470303285,0.552485933615378,2.64073230778596,1.0925470080403,0.655622074797121,0,0.15403067420883,0,0,0.5277581444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| |||
|short_description=p9@TMBIM6 | |||
}} |
Revision as of 13:21, 11 January 2014
Short description: | p9@TMBIM6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_TMBIM6_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 347bp_to_ENST00000542631, uc001ruz.2_5end |
EntrezGene: | TMBIM6 |
HGNC: | 11723 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.60e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.60e-15 | 42 |
defensive cell | 2.98e-12 | 48 |
phagocyte | 2.98e-12 | 48 |
myeloid leukocyte | 4.65e-12 | 72 |
granulocyte monocyte progenitor cell | 1.34e-11 | 67 |
myeloid lineage restricted progenitor cell | 3.38e-11 | 66 |
myeloid cell | 9.77e-10 | 108 |
common myeloid progenitor | 9.77e-10 | 108 |
macrophage dendritic cell progenitor | 1.21e-09 | 61 |
monopoietic cell | 1.73e-09 | 59 |
monocyte | 1.73e-09 | 59 |
monoblast | 1.73e-09 | 59 |
promonocyte | 1.73e-09 | 59 |
multi fate stem cell | 5.54e-09 | 427 |
mesenchymal cell | 1.32e-08 | 354 |
somatic stem cell | 2.51e-08 | 433 |
stem cell | 3.59e-08 | 441 |
connective tissue cell | 8.15e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
bone element | 1.41e-11 | 82 |
bone marrow | 2.15e-10 | 76 |
lateral plate mesoderm | 4.41e-10 | 203 |
skeletal element | 3.03e-09 | 90 |
artery | 1.16e-08 | 42 |
arterial blood vessel | 1.16e-08 | 42 |
arterial system | 1.16e-08 | 42 |
skeletal system | 2.92e-08 | 100 |
epithelial tube open at both ends | 7.12e-08 | 59 |
blood vessel | 7.12e-08 | 59 |
blood vasculature | 7.12e-08 | 59 |
vascular cord | 7.12e-08 | 59 |
connective tissue | 7.22e-08 | 371 |
immune system | 1.30e-07 | 93 |
systemic artery | 2.21e-07 | 33 |
systemic arterial system | 2.21e-07 | 33 |
hematopoietic system | 2.34e-07 | 98 |
blood island | 2.34e-07 | 98 |
musculoskeletal system | 2.80e-07 | 167 |
mesoderm | 4.38e-07 | 315 |
mesoderm-derived structure | 4.38e-07 | 315 |
presumptive mesoderm | 4.38e-07 | 315 |