FFCP PHASE1:Hg19::chr11:63448962..63448982,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10313 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10469 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z4M1,F5H774,F5H891,F5GWG7 | |||
|association_with_transcript=0bp_to_ENST00000536011,ENST00000537981,ENST00000540798,ENST00000543123,ENST00000543552,ENST00000545432_5end | |||
|description=CAGE_peak_1_at_RTN3_5end | |||
|id=chr11:63448962..63448982,+ | |||
|ontology_enrichment_celltype=CL:0000766!6.59e-12!76;CL:0002194!3.28e-10!63;CL:0000576!3.28e-10!63;CL:0000040!3.28e-10!63;CL:0000559!3.28e-10!63;CL:0002009!1.27e-09!65;CL:0000860!4.36e-08!45;CL:0000839!4.70e-08!70;CL:0000557!5.55e-08!71;CL:0000763!1.88e-07!112;CL:0000049!1.88e-07!112;CL:0002057!4.50e-07!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.41e-11,72;CL:0002194,2.60e-09,59;CL:0000576,2.60e-09,59;CL:0000040,2.60e-09,59;CL:0000559,2.60e-09,59;CL:0002009,9.60e-09,61;CL:0000473,1.64e-08,48;CL:0000234,1.64e-08,48;CL:0000839,3.10e-07,66;CL:0000557,3.62e-07,67;CL:0000860,4.50e-07,42;CL:0002057,4.50e-07,42;CL:0000763,9.69e-07,108;CL:0000049,9.69e-07,108 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.09e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.15e-29!82;UBERON:0000073!2.78e-29!94;UBERON:0001016!2.78e-29!94;UBERON:0005743!1.75e-28!86;UBERON:0001049!6.47e-28!57;UBERON:0005068!6.47e-28!57;UBERON:0006241!6.47e-28!57;UBERON:0007135!6.47e-28!57;UBERON:0000955!2.42e-24!69;UBERON:0006238!2.42e-24!69;UBERON:0002616!5.24e-23!59;UBERON:0003080!3.84e-22!42;UBERON:0002780!5.10e-22!41;UBERON:0001890!5.10e-22!41;UBERON:0006240!5.10e-22!41;UBERON:0001893!2.41e-19!34;UBERON:0002020!3.19e-19!34;UBERON:0003528!3.19e-19!34;UBERON:0002791!1.15e-18!33;UBERON:0002346!2.46e-18!90;UBERON:0001869!4.27e-18!32;UBERON:0003075!2.73e-17!86;UBERON:0007284!2.73e-17!86;UBERON:0003056!2.87e-14!61;UBERON:0000956!4.48e-14!25;UBERON:0000203!4.48e-14!25;UBERON:0002619!6.00e-14!22;UBERON:0001950!8.65e-13!20;UBERON:0000924!1.45e-12!173;UBERON:0006601!1.45e-12!173;UBERON:0000033!4.90e-12!123;UBERON:0000468!9.40e-12!659;UBERON:0004121!1.02e-11!169;UBERON:0007023!7.45e-11!115;UBERON:0000153!1.11e-10!129;UBERON:0007811!1.11e-10!129;UBERON:0000922!2.37e-10!612;UBERON:0000467!6.45e-10!625;UBERON:0000923!7.79e-10!604;UBERON:0005291!7.79e-10!604;UBERON:0006598!7.79e-10!604;UBERON:0002532!7.79e-10!604;UBERON:0000480!7.88e-10!626;UBERON:0002050!1.52e-09!605;UBERON:0005423!1.52e-09!605;UBERON:0000062!1.85e-08!511;UBERON:0002390!1.70e-07!102;UBERON:0003061!1.70e-07!102;UBERON:0002371!3.78e-07!80;UBERON:0001474!3.88e-07!86;UBERON:0003076!5.29e-07!15;UBERON:0003057!5.29e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;9.02e-17;34!UBERON:0003528;1.86e-16;34!UBERON:0002020;1.86e-16;34!UBERON:0001869;2.80e-16;32!UBERON:0002791;3.14e-16;32!UBERON:0002780;7.88e-16;41!UBERON:0001890;7.88e-16;41!UBERON:0000073;1.33e-15;53!UBERON:0002616;1.33e-15;53!UBERON:0000956;4.54e-14;25!UBERON:0000203;4.54e-14;25!UBERON:0002619;6.08e-14;22!UBERON:0001950;8.77e-13;20!UBERON:0001017;6.67e-12;75!UBERON:0000955;2.46e-11;68!UBERON:0001016;2.81e-10;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.65e-30,89;UBERON:0001017,1.81e-29,81;UBERON:0001049,9.03e-28,56;UBERON:0005068,9.03e-28,56;UBERON:0006241,9.03e-28,56;UBERON:0007135,9.03e-28,56;UBERON:0000073,4.55e-26,53;UBERON:0002616,4.55e-26,53;UBERON:0000955,3.73e-24,68;UBERON:0006238,3.73e-24,68;UBERON:0002780,5.10e-22,41;UBERON:0001890,5.10e-22,41;UBERON:0003080,5.10e-22,41;UBERON:0006240,5.10e-22,41;UBERON:0001893,2.41e-19,34;UBERON:0003528,3.19e-19,34;UBERON:0002020,3.19e-19,34;UBERON:0001869,4.27e-18,32;UBERON:0002346,4.37e-18,86;UBERON:0002791,4.90e-18,32;UBERON:0003075,4.83e-17,82;UBERON:0007284,4.83e-17,82;UBERON:0003056,2.39e-14,61;UBERON:0000956,4.48e-14,25;UBERON:0000203,4.48e-14,25;UBERON:0002619,6.00e-14,22;UBERON:0001950,8.65e-13,20;UBERON:0004121,3.97e-12,171;UBERON:0000924,3.97e-12,171;UBERON:0006601,3.97e-12,171;UBERON:0011216,7.79e-12,223;UBERON:0007023,1.87e-10,114;UBERON:0010371,2.43e-10,104;UBERON:0000923,7.35e-09,560;UBERON:0010316,7.35e-09,560;UBERON:0005291,7.35e-09,560;UBERON:0006598,7.35e-09,560;UBERON:0010317,7.35e-09,560;UBERON:0002532,7.35e-09,560;UBERON:0005423,2.14e-08,581;UBERON:0000922,2.68e-08,592;UBERON:0002050,2.81e-08,564;UBERON:0010314,2.36e-07,132;UBERON:0003076,5.29e-07,15;UBERON:0003057,5.29e-07,15;UBERON:0002390,9.13e-07,98;UBERON:0003061,9.13e-07,98 | |||
|phase1_expression=106.826887011087,199.113487218614,178.730184393691,65.0476439295348,81.7938802801937,74.1487745485313,192.507907407916,102.338619495147,249.693460559046,69.542704029927,36.2856607345662,48.7124259850284,37.7186778866689,67.9477277750656,49.3782089834595,51.0967111303349,68.7071761947334,37.245814609756,56.1122718609083,73.749513787996,42.2281430875604,101.872784480379,125.371362363403,81.4402829183661,87.6287624371724,25.9041445485555,26.3542892134326,27.4700626784741,112.895547455635,77.533538415637,125.246243762705,22.9855306119732,22.2892379895905,44.3704812200145,78.3193397866849,38.101354306629,50.7928760049286,104.705132212525,97.4646014704889,83.3321743548871,134.797115492434,101.054823797922,120.545365652799,123.73390120141,84.6442113862933,88.7857663947407,122.025244375484,84.2894170444743,76.1877672401955,127.735422191035,92.7301757635344,85.6065672196679,105.836923986142,78.7491313972268,71.7760378950011,138.169877224272,84.0550942178165,87.642158933583,114.475375746718,84.7252631480887,77.999129347483,95.9867283543344,95.7425556583833,77.999129347483,109.118673724348,90.7816359505824,70.3789141365,128.639316611453,86.5661644577534,82.7489498326494,100.496317437139,103.117738076518,75.0015858234896,89.5722413962633,69.3090017886042,87.008337885976,193.766888727704,189.373061873139,179.530480340639,78.0934917851021,77.9753374620433,79.0935785800865,15.839662001519,20.753267227961,13.3426388079533,27.737464466823,13.2130675721884,18.3920780785435,21.1534359291156,28.6216126360609,7.96898156753228,9.39579502993502,9.55683070313072,35.686258716337,24.6623767711876,58.7346509048422,16.523620689562,15.7204305099666,15.6257139239627,18.7248874837559,10.7554347989085,13.7299863663073,3.89653456815823,34.0915998068631,18.2655662634399,18.1657793558569,17.331447280961,28.0519990199229,29.7835905912121,27.7900058780213,25.1478516185122,22.314837601599,10.5283459845063,8.02622484269139,5.22677619024884,28.3273356743915,12.6462762888634,15.1196076012357,17.4583587493457,21.3438827597145,10.4173352617027,20.9099449778642,21.6828171471993,19.1979916731628,27.4847598415161,26.9926067330179,22.1704559168683,16.7333596876528,11.4999284186908,11.0066546950927,24.3806866313962,30.8522395463673,91.4217317181242,64.3361691244528,48.1284394210454,69.9608686580779,32.6067238290951,41.363963975724,51.4269405372529,50.5543026214646,43.3025493467111,121.548582061877,41.8939581536424,45.6064864624848,84.3823223502177,92.1146310313124,91.0762029554226,48.1751061096791,42.3276233977295,33.4311751196608,68.3742681341465,43.8719643504123,50.6825132347088,41.2674797604527,66.2809109211651,73.456517197998,70.640298689442,66.4131071065175,73.2878501134623,73.9732554209921,66.8696666401184,61.5820405631995,66.6289417106503,75.3709314709031,59.9505041432502,70.9039842575593,35.4756408749348,49.4364399321785,29.1301611185178,59.8037365527921,50.0140760930012,328.133239415798,492.480935468373,60.6170732478123,81.5034000780322,74.0788493237792,99.5717039715405,109.571589126047,77.3177073192418,28.5945576072577,58.7119476513377,73.7535969767308,36.4116911417727,42.2991510298821,37.759699619209,59.634826492103,30.5373239974399,109.896751530051,38.7078495269597,49.0605766528226,46.3290909710583,38.4010810565111,47.5906456442307,34.4104476420509,67.3708765141148,47.659715116966,85.1404436888307,54.6481314349745,63.7948677538677,92.8364589176787,79.0479955997862,66.9977733537183,59.431296939183,79.2403370284763,39.0690082583946,45.3601937782549,65.8042698010894,53.4265582683699,95.6146758221634,98.6635136341782,73.3284378012084,79.824231558451,62.0376226015402,65.6983377116354,83.938702205547,143.9662114018,74.2469979328334,54.2732614624846,81.7403099943618,44.2910195683545,78.1021103536551,70.8287250540311,49.6812535469729,50.0545609692939,51.5490167916677,42.7338847129616,108.068703630822,113.31295191487,109.454694183086,83.6544713974039,80.9949931310767,70.805607660711,29.725411142665,42.4539019207304,48.3472224733682,45.043689019102,37.5377330468185,105.88458603566,91.5414867124092,98.5735112223441,112.499852187042,87.8054159692397,105.110884266216,118.381888564624,116.35932881933,93.4935591379729,44.2893272774789,44.8773676171027,51.0351774050936,29.4017422771084,31.6887587054577,57.9868057839799,43.7184530944239,32.6682693566841,101.219484920982,67.4261494473205,66.9476740992616,58.4489116939622,47.5502039507014,50.5532910565572,117.616798217027,28.0782392025486,63.5057904911202,110.945397561149,94.161772777129,57.6022126566685,42.5946671570482,62.022853628479,70.3281914183755,89.2825608578667,124.83202208631,93.3677017905558,113.256945664011,60.926992091405,37.7959788447434,47.2111073817147,50.6005653271093,28.4821259743683,41.4053293498428,130.555758042425,100.727408511131,23.635405171648,33.579949146152,29.4144869883465,70.9271479243528,47.3665647692264,41.0261065235164,71.8504273295362,42.262099501066,60.3689546266274,24.8668996388603,54.719969160536,47.5196475028275,59.7707029440743,74.46050827648,42.9187735022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1,21.7986574766198 | |||
|short_description=p1@RTN3 | |||
}} |
Revision as of 08:18, 11 January 2014
Short description: | p1@RTN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RTN3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000536011, ENST00000537981, ENST00000540798, ENST00000543123, ENST00000543552, ENST00000545432_5end |
EntrezGene: | RTN3 |
HGNC: | 10469 |
UniProt: | B7Z4M1F5H774F5H891F5GWG7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.41e-11 | 72 |
monopoietic cell | 2.60e-09 | 59 |
monocyte | 2.60e-09 | 59 |
monoblast | 2.60e-09 | 59 |
promonocyte | 2.60e-09 | 59 |
macrophage dendritic cell progenitor | 9.60e-09 | 61 |
defensive cell | 1.64e-08 | 48 |
phagocyte | 1.64e-08 | 48 |
myeloid lineage restricted progenitor cell | 3.10e-07 | 66 |
granulocyte monocyte progenitor cell | 3.62e-07 | 67 |
classical monocyte | 4.50e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.50e-07 | 42 |
myeloid cell | 9.69e-07 | 108 |
common myeloid progenitor | 9.69e-07 | 108 |