FFCP PHASE1:Hg19::chr11:8285422..8285426,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=4004 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6641 | |||
|TSSclassifier=strong | |||
|UniProt=P25800 | |||
|association_with_transcript=-16bp_to_NM_002315,uc001mgg.1,uc009yfo.1_5end | |||
|description=CAGE_peak_2_at_LMO1_5end | |||
|id=chr11:8285422..8285426,- | |||
|ontology_enrichment_celltype=CL:0002322!2.89e-09!5;CL:0002319!2.41e-08!25;CL:0000133!4.98e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002319;2.99e-17;25!CL:0000123;3.56e-17;2!CL:0000242;3.56e-17;2!CL:0000540;6.12e-12;6!CL:0000404;6.12e-12;6!CL:0000319;6.46e-09;1!CL:0000312;2.17e-07;5!CL:0000333;3.30e-07;5!CL:0000095;7.60e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.97e-17,25;CL:0000242,3.57e-17,2;CL:0000047,2.72e-15,8;CL:0000133,2.12e-13,59;CL:0000540,6.99e-12,6;CL:0000031,6.99e-12,6;CL:0000404,6.99e-12,6;CL:0000221,1.02e-10,72;CL:0000319,4.91e-09,1;CL:0000312,2.17e-07,5;CL:0000095,7.10e-07,17;CL:0000123,7.10e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000031;6.12e-12;6!UBERON:0003056;1.45e-11;3!UBERON:0007123;3.06e-07;5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;1.88e-09;1!DOID:3030;6.46e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,1.89e-09,1;DOID:3030,4.91e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.10e-35!94;UBERON:0001016!1.10e-35!94;UBERON:0001017!3.33e-35!82;UBERON:0005743!5.81e-35!86;UBERON:0001049!9.15e-32!57;UBERON:0005068!9.15e-32!57;UBERON:0006241!9.15e-32!57;UBERON:0007135!9.15e-32!57;UBERON:0000955!3.98e-31!69;UBERON:0006238!3.98e-31!69;UBERON:0002616!2.24e-28!59;UBERON:0002780!3.68e-27!41;UBERON:0001890!3.68e-27!41;UBERON:0006240!3.68e-27!41;UBERON:0003080!2.47e-26!42;UBERON:0002020!7.05e-24!34;UBERON:0003528!7.05e-24!34;UBERON:0002791!1.83e-22!33;UBERON:0003075!6.50e-22!86;UBERON:0007284!6.50e-22!86;UBERON:0001893!1.24e-21!34;UBERON:0004121!8.63e-21!169;UBERON:0003056!1.70e-20!61;UBERON:0002346!1.86e-20!90;UBERON:0000924!5.83e-20!173;UBERON:0006601!5.83e-20!173;UBERON:0002619!3.36e-19!22;UBERON:0001869!6.02e-19!32;UBERON:0001950!6.96e-19!20;UBERON:0000033!7.91e-19!123;UBERON:0000956!1.69e-18!25;UBERON:0000203!1.69e-18!25;UBERON:0007023!1.86e-17!115;UBERON:0000153!2.18e-17!129;UBERON:0007811!2.18e-17!129;UBERON:0002298!5.06e-11!8;UBERON:0001872!2.36e-09!5;UBERON:0001894!5.02e-07!7;UBERON:0006222!5.02e-07!7;UBERON:0004733!7.78e-07!12;UBERON:0002028!7.78e-07!12;UBERON:0007277!7.78e-07!12;UBERON:0002308!7.92e-07!9;UBERON:0000125!7.92e-07!9;UBERON:0003076!8.11e-07!15;UBERON:0003057!8.11e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0007029;6.46e-09;1!UBERON:0000966;2.83e-07;5!UBERON:0005388;2.83e-07;5!UBERON:0001802;2.83e-07;5!UBERON:0002046;3.06e-07;5!UBERON:0000013;3.30e-07;5!UBERON:0002410;3.30e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007029,3.58e-09,1;UBERON:0002046,2.97e-07,5;UBERON:0004117,2.97e-07,5;UBERON:0007689,2.97e-07,5;UBERON:0007123,2.97e-07,5;UBERON:0003091,2.97e-07,5;UBERON:0000013,3.92e-07,5;UBERON:0002410,3.92e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,1.45990461090791,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.397589304964456,0.464775771478074,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,1.54657762555539,1.00509759200609,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0.142283686696828,1.59426272728822,0,0,0.635020748171649,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,1.36771666781428,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,2.44879151050393,0,0,0,0,2.26739473068848,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0.260427761085233,0,0,0,0,0,4.48166385213904,0,0.868124974666461,0,0.361789315876224,0,0.110579259931225,0,0,0,0.41827123283581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539209063845416,0,0.468528891450678,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0.520679215005393,0,0,0,7.73937146122274,0,0,0.0821154570532092,0,0,0.677942222341597,0,0,0.126621591911757,0.391102765469606,0,0,0.39961921916426,0,0,0.171594997861965,0,0,0.471388069233591,0.271808412147228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0.77380195455795,0.364497339948148,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0.3755727921195,1.14681839138014,0.221858103073705,0.434674820589684,1.52183498429854,0.124980407962107,0,0,0,9.36669811613763,6.23160423026548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,1.47463745252232,0,0,0.106691729694141,0,0,0,0,1.24415452006595,1.15104934173287,0.107824811396682,0,15.944607176034,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0.504143392443436,0.207471757392654,0.161475645631851,0,0.294443155503077,0,0.733714394086716,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0,0.781078098613847,0.620060389503552,0.19024743058172,0.546974809018219,0,0.992422356778588,0,0,0.535701835878287,0,0,0.227662191351298,0.0887023701626388,0,0,0.271878931907327,0.0657727735628491,0,0,0,0.314231179832004,0,0,0.215927591218621,0.9555033757741,2.07281978112303,3.79232668158544,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,1.94284397223656,0,0,0,0,1.20934568419972,0,0,0,0,0,0,0.392616934229891,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0.286679166302903,0.631086248772738,0.475940431336403,1.30905207102113,0,0,0,0,0,0.764859003745869,0,0.203977659483963,0.26721740526556,0.36757959813938,0,0,0,0.829169439458779,1.24119595034274,0,0,0,0,2.24263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@LMO1 | |||
}} |
Revision as of 06:27, 11 January 2014
Short description: | p2@LMO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LMO1_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_NM_002315, uc001mgg.1, uc009yfo.1_5end |
EntrezGene: | LMO1 |
HGNC: | 6641 |
UniProt: | P25800 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.97e-17 | 25 |
Merkel cell | 3.57e-17 | 2 |
neuronal stem cell | 2.72e-15 | 8 |
neurectodermal cell | 2.12e-13 | 59 |
neuron | 6.99e-12 | 6 |
neuroblast | 6.99e-12 | 6 |
electrically signaling cell | 6.99e-12 | 6 |
ectodermal cell | 1.02e-10 | 72 |
mucus secreting cell | 4.91e-09 | 1 |
keratinocyte | 2.17e-07 | 5 |
neuron associated cell | 7.10e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 7.10e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
surface | 3.58e-09 | 1 |
thyroid gland | 2.97e-07 | 5 |
pharyngeal pouch | 2.97e-07 | 5 |
thyroid diverticulum | 2.97e-07 | 5 |
pharyngeal pouch 2 | 2.97e-07 | 5 |
thyroid primordium | 2.97e-07 | 5 |
sympathetic nervous system | 3.92e-07 | 5 |
autonomic nervous system | 3.92e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 1.89e-09 | 1 |
mucinous adenocarcinoma | 4.91e-09 | 1 |