FFCP PHASE1:Hg19::chr11:236553..236567,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5719 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9558 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=7bp_to_ENST00000532097_5end | |||
|description=CAGE_peak_5_at_PSMD13_5end | |||
|id=chr11:236553..236567,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.93e-19!140;CL:0000037!4.22e-17!172;CL:0000566!4.22e-17!172;CL:0000988!4.82e-15!182;CL:0002087!1.40e-14!119;CL:0002032!2.14e-14!165;CL:0000837!2.14e-14!165;CL:0002031!7.64e-13!124;CL:0000860!9.91e-11!45;CL:0002057!1.53e-10!42;CL:0000838!3.61e-09!52;CL:0000542!8.36e-09!53;CL:0000051!8.36e-09!53;CL:0000766!1.00e-07!76;CL:0000624!6.29e-07!6;CL:0000763!7.04e-07!112;CL:0000049!7.04e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000094;1.36e-22;8!CL:0000624;1.23e-21;6!CL:0000791;1.76e-17;18!CL:0000789;1.76e-17;18!CL:0002419;1.76e-17;18!CL:0000623;7.35e-17;3!CL:0000775;1.93e-16;3!CL:0000081;2.80e-16;11!CL:0000226;9.93e-16;3!CL:0000842;9.93e-16;3!CL:0000084;3.16e-12;25!CL:0000542;6.73e-11;53!CL:0000898;1.19e-07;3!CL:0000767;1.48e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,1.92e-22,8;CL:0000624,1.26e-21,6;CL:0000738,1.62e-21,136;CL:0000791,1.78e-17,18;CL:0000789,1.78e-17,18;CL:0002420,1.78e-17,18;CL:0002419,1.78e-17,18;CL:0000790,1.78e-17,18;CL:0000838,7.26e-17,52;CL:0000623,7.97e-17,3;CL:0000825,7.97e-17,3;CL:0000542,1.73e-16,53;CL:0000051,1.73e-16,53;CL:0000775,2.15e-16,3;CL:0000037,2.61e-16,168;CL:0000081,3.57e-16,11;CL:0000226,8.13e-16,3;CL:0000842,8.13e-16,3;CL:0000988,3.49e-15,177;CL:0002087,2.38e-13,115;CL:0002032,5.49e-13,161;CL:0000837,5.49e-13,161;CL:0000084,3.19e-12,25;CL:0000827,3.19e-12,25;CL:0002031,7.35e-10,120;CL:0000898,1.29e-07,3;CL:0000767,1.99e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.76e-17;18!CL:0000051;6.73e-11;53 | |||
|ontology_enrichment_disease=DOID:305!1.01e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.37e-08!102;UBERON:0003061!9.37e-08!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.55e-08;15!UBERON:0000179;4.55e-08;15!UBERON:0000463;4.55e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.77e-08,15;UBERON:0000179,4.77e-08,15;UBERON:0000463,4.77e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.157421562627358,2.36018566109342,0.383829398097213,1.08371286321253,1.83884244895785,0,0.739508020333575,0.154934401160603,0.142169232487422,0.293600439334847,0,0.601633342410425,2.38711957787437,0,0,0,0.436194716338694,0.377875943688809,0,0.464858073811369,0.411167888021826,0,0.575384784644301,0.512321413058201,0.709446689665756,0,0,1.35426486594342,0,0,0.449446968890169,0,0.320929027076094,1.91801137739712,0.659702600373432,0.797854630486527,0.852449501065388,0,0,0.622822248995575,0.502497330513487,0,0.65156653411535,0,0,0.632924774881769,0.633765858935825,0.425208599930087,0.419317291016752,0.673971786878971,0.150176892841506,0,0.570025487482497,0.19891667719909,0.365328307529268,0,0.546138611262131,0,0.853460445133014,0,0,0,0,11.9534723512984,4.11066032559657,7.64546456250458,0,1.12101712596307,0.263384084775077,4.52432471261816,6.28817220398664,16.4481199199607,0,1.30368906653436,0,1.94826728407911,0,0.294605907474837,0.443067789167242,0.270803863765016,0.25618263945135,0.390178042679635,0,0,0,2.37258501059297,0,0,0.226618685395132,4.21542542962113,2.40539211837841,1.77113784413652,0,0,0,0.150575119077773,0.127986611154418,0,0,0,8.26587647221403,4.27904313253612,7.53086900190555,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0.74291500265913,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0.0920498986422993,0,0,0,0,0,0.272746120590835,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,1.38134921352481,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0,1.1240175325762,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.10795356625974,9.27198571895924,8.08561128562415,0,0,0,0,0,2.24702107184155,5.9832291840805,8.28831026872071,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0,0,0,1.44737618286021,3.45142721309787,2.77491650288955,0.303127571446259,1.66435439510497,0.604780586659361,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.184161977871793,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0.165284915360978,0.192190067365106,0,0.2023155617111,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0.202910376962704,0,0.281695602532241,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0,0,0,0,0,0.507447609232169,0,1.13929437434833,0.476463550915578,0.411362273086194,1.29694662238543,0,0,0,0,0.245040215981032,0,0,0,0.478278818186467,0,0,0,0,0,0.228234679033192,0.156679895773023,0,0,0.1605880751037,0,0,0.343505344755765,0,0,0,0,0,0,0,0.33307196799782,0,0.748562161632879,0,0.121360521749513,0.222886768554957,0,0,0.296964680832639,0.921482106297696,0,0,0.111308705022906,0,0,0.19924798825107,0,0.251932747854276,0.20453736500431,0.369254416383208,0,0.179736702294654,0.179021174675609,0.511572370226872,0,0,0,0,0,0,0.260427761085233,0.262379999988587,0,0.227586896570999,0.254253650292766,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0.139423744278603,0,0.227884111694002,0,0.269272933229316,0,0,0.183195186803725,0,0,0.156980256395025,0,0.225595660617181,0.588187602953219,0.503464760927528,0,0,0,0.163232808159148,0.424059214301822,0,0,0.0884575645033392,0,0,0,0.104421949505455,0.067401132980677,0,0,0.547364367646998,0.19566461893209,0.485560759068186,0,0,0,0,0.300646838828985,0.103688191397247,0,0,0,0,0,0,0,0.293977192243133,0.174118413160805,0,0,0,0.0730893170861856,0.328461828212837,0,0,0,0,0.397429223405979,0,0.391102765469606,0,0.213452994739353,0.39961921916426,0,0.114536596165916,0.514784993585894,0.288109595976299,0,0,0,0,0,0,0.600420288709789,0,0,0,0.262887354279314,0,0,0,0.599037001496973,0,0,0,0,0,0.157566364614447,0,0,0,0.169346664131569,0,0,0,0.275078873194468,0,0.449947783103001,1.5476039091159,0,0.335434687599266,0.0788057072991982,0.104909176269996,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0.704815022316672,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0.235265819698172,0,0,0,0,0.554805861502613,0,0,0,0,0,0.15543720058278,0,0,0,0,0.414706207840855,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0.782982875895635,0,0.231522474323834,0,0,0,0.219284049578707,0.176689145945881,0.192914038270915,0.168942440653073,0,0.345430341731199,0.303859956177382,0.138258436151731,0,0.132864840313363,0,0,0.491545817507439,0.211312123358627,0,0,0.172214979660816,0,0.184105950251841,0.139879507719444,0,0.255788742607303,0,0,0.218419276384028,0,0,0,0,0,0.0788617450012534,0.80057074828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| |||
|short_description=p5@PSMD13 | |||
}} |
Revision as of 05:45, 11 January 2014
Short description: | p5@PSMD13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PSMD13_5end |
Coexpression cluster: | NA |
Association with transcript: | 7bp_to_ENST00000532097_5end |
EntrezGene: | PSMD13 |
HGNC: | 9558 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 1.92e-22 | 8 |
CD4-positive, alpha-beta T cell | 1.26e-21 | 6 |
leukocyte | 1.62e-21 | 136 |
mature alpha-beta T cell | 1.78e-17 | 18 |
alpha-beta T cell | 1.78e-17 | 18 |
immature T cell | 1.78e-17 | 18 |
mature T cell | 1.78e-17 | 18 |
immature alpha-beta T cell | 1.78e-17 | 18 |
lymphoid lineage restricted progenitor cell | 7.26e-17 | 52 |
natural killer cell | 7.97e-17 | 3 |
pro-NK cell | 7.97e-17 | 3 |
lymphocyte | 1.73e-16 | 53 |
common lymphoid progenitor | 1.73e-16 | 53 |
neutrophil | 2.15e-16 | 3 |
hematopoietic stem cell | 2.61e-16 | 168 |
blood cell | 3.57e-16 | 11 |
single nucleate cell | 8.13e-16 | 3 |
mononuclear cell | 8.13e-16 | 3 |
hematopoietic cell | 3.49e-15 | 177 |
nongranular leukocyte | 2.38e-13 | 115 |
hematopoietic oligopotent progenitor cell | 5.49e-13 | 161 |
hematopoietic multipotent progenitor cell | 5.49e-13 | 161 |
T cell | 3.19e-12 | 25 |
pro-T cell | 3.19e-12 | 25 |
hematopoietic lineage restricted progenitor cell | 7.35e-10 | 120 |
naive T cell | 1.29e-07 | 3 |
basophil | 1.99e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 4.77e-08 | 15 |
haemolymphatic fluid | 4.77e-08 | 15 |
organism substance | 4.77e-08 | 15 |