FFCP PHASE1:Hg19::chr10:112404108..112404122,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=282996 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27424 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T481,F5GXH8 | |||
|association_with_transcript=-32bp_to_ENST00000369519,ENST00000539821,NM_001134363,uc001kzf.2_5end | |||
|coexpression_cluster_id=C1104 | |||
|description=CAGE_peak_3_at_RBM20_5end | |||
|id=chr10:112404108..112404122,+ | |||
|ontology_enrichment_celltype=CL:0000243!5.26e-07!15;CL:0000125!5.26e-07!15;CL:0000030!5.26e-07!15;CL:0000339!5.26e-07!15 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003104;4.75e-12;31!UBERON:0005062;1.90e-08;4!UBERON:0007284;1.90e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;9.83e-11;22!DOID:2994;9.83e-11;22!DOID:114;3.42e-08;2!DOID:0050615;6.62e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,8.82e-11,22;DOID:2994,8.82e-11,22;DOID:114,3.20e-08,2;DOID:0050615,6.49e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0000955!2.40e-17!69;UBERON:0006238!2.40e-17!69;UBERON:0001017!6.81e-16!82;UBERON:0005743!1.68e-15!86;UBERON:0000073!1.81e-15!94;UBERON:0001016!1.81e-15!94;UBERON:0007023!2.91e-15!115;UBERON:0002616!6.98e-14!59;UBERON:0002780!1.94e-13!41;UBERON:0001890!1.94e-13!41;UBERON:0006240!1.94e-13!41;UBERON:0001049!2.03e-13!57;UBERON:0005068!2.03e-13!57;UBERON:0006241!2.03e-13!57;UBERON:0007135!2.03e-13!57;UBERON:0003075!2.17e-13!86;UBERON:0007284!2.17e-13!86;UBERON:0002346!3.70e-13!90;UBERON:0003080!6.42e-13!42;UBERON:0001893!2.99e-12!34;UBERON:0001869!3.24e-12!32;UBERON:0002791!7.69e-12!33;UBERON:0002020!2.71e-11!34;UBERON:0003528!2.71e-11!34;UBERON:0003056!7.89e-11!61;UBERON:0000153!1.44e-09!129;UBERON:0007811!1.44e-09!129;UBERON:0000956!2.75e-09!25;UBERON:0000203!2.75e-09!25;UBERON:0000033!5.79e-09!123;UBERON:0000924!1.20e-08!173;UBERON:0006601!1.20e-08!173;UBERON:0004121!1.24e-08!169;UBERON:0000119!3.34e-08!312;UBERON:0000483!3.74e-08!309;UBERON:0000481!4.75e-07!347;UBERON:0001950!4.90e-07!20;UBERON:0002619!5.15e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;3.48e-11;3!UBERON:0003978;3.85e-11;3!UBERON:0000946;3.85e-11;3!UBERON:0007100;8.19e-10;25!UBERON:0002081;4.91e-08;2!UBERON:0002133;7.13e-08;2!UBERON:0001905;3.23e-07;2!UBERON:0002757;3.23e-07;2!UBERON:0010134;3.23e-07;2!UBERON:0005408;3.23e-07;2!UBERON:0001899;3.23e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,3.67e-11,3;UBERON:0003978,4.20e-11,3;UBERON:0009751,4.20e-11,3;UBERON:0000946,4.20e-11,3;UBERON:0002523,4.20e-11,3;UBERON:0005983,4.20e-11,3;UBERON:0002165,4.20e-11,3;UBERON:0002062,4.20e-11,3;UBERON:0007280,4.20e-11,3;UBERON:0007100,5.98e-09,27;UBERON:0002081,5.18e-08,2;UBERON:0010227,5.18e-08,2;UBERON:0002133,7.77e-08,2;UBERON:0003103,1.67e-07,68;UBERON:0001905,2.46e-07,2;UBERON:0002757,2.46e-07,2;UBERON:0010134,2.46e-07,2;UBERON:0005408,2.46e-07,2;UBERON:0001899,2.46e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0.626909442956176,0.572471974262113,1.09499540058307,3.13856598987007,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0,0,0.49333509683432,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0,0.414644220061482,0.756962552626885,0.36497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811512834825538,0.117408694235822,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.979005787313703,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,4.57847324091717,2.88783249722058,0,0,0,0.193341436584244,0,0,0.137836572484531,0,0,0.255679882248303,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0.55597265731176,0.715624433709956,1.86079184679834,1.58189712359363,0,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06824071127473,0,0.245040215981032,3.15865397713722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606802608747567,0,1.13654458722565,0,0,0,0,0.140669416410513,0.222617410045812,0,0,4.38345574152353,0,0,2.14764233254525,0,0,0,0,0,0.493217028184668,0,0,0,0.0927680981618513,0,0,0,0,0.227586896570999,0,0,3.44743373241465,2.62444152044929,0,0,0.361789315876224,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,2.48155226678899,0.980312671588698,0.839107934879214,1.3282761290693,0,0,0,0,7.78999103071528,0,0.619202951523374,0.611030144933625,0,0.123563938946503,0.104421949505455,0.269604531922708,0.802577647298789,0.234264445725339,0,0.19566461893209,0,0,1.20990716048664,0,0.126373159256976,1.9542044523884,1.7626992537532,0,0,0,0,0,0,0,0,0,1.57254001417827,0.171986032471617,0,0,0,0.484945082442097,1.412098027064,0.90392296312213,0,0,0.0633107959558787,0,0,1.06726497369676,0.19980960958213,0,8.36117152011184,0,0,1.49103042678519,0,0.135904206073614,0.104602846312333,0.917983958726896,0,0.600420288709789,0.136905378891993,0,0,0,7.26134243307861,11.4580212005842,4.30723814746088,8.78587602195561,13.7352335403703,8.70368684023303,40.3100834920358,0,1.16495949527454,0,0,0,0.688992370603241,0,0,0.136203406111576,0,0.137539436597234,0.415440338029185,0,0,0.364497339948148,0,0.0788057072991982,1.25891011523995,0,0.179287339332845,0,13.579211201094,7.28301167401975,0,0,0,0,0,0,0,0.113312091520126,0,0,0.258565912723101,0,3.25064991980226,0,0,0.157204305099666,0,0,0,0,0,0.544017803369474,0,0,0,19.0035456462784,0,0.122026264901963,0.3755727921195,0,0.110929051536852,0.372578417648301,9.13100990579123,0.124980407962107,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.30924491143255,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0.194860308839388,0,0,0,0,0,0.39997479170986,0,0,0,0,0,0,0,6.46948868380091,0.157265941855896,14.1972529649618,0,0,3.96594445628807,0,0,0,1.60114149657094,0,0.3062454773532,0.321146125482298,0,0.319267718114302,0,0.252071696221718,0.345786262321089,0,0,0,0.11796972334774,0,0,0,0.690359926060101,0.198916222116275,0.150420656698515,0.60511520611056,0,0,0,0.147856086217045,0.0675375846183947,0.781078098613847,0.413373593002368,0.19024743058172,1.09394961803644,0,0.496211178389294,0,0,1.60710550763486,2.69026977775059,0,0,0.0887023701626388,0.230467975111559,0,0.40781839786099,0.131545547125698,0.118193840883968,0.222462803784138,0.156986185701028,0.314231179832004,0,0,0,0,1.07214816264985,0.47404083519818,1.97610423125813,0.695433089210318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,3.2852098193999,1.1598144313382,0.485710993059139,0,0.994753875806841,0.594600453887843,12.9887994344804,0.769583617218004,4.83081099413355,0.231522474323834,0.437119121007915,4.23285566725371,0.245148321753905,1.17838273550813,0,0,0.4226557275834,0,0,0,0.399764623699716,0,0,0,0,0,0,8.99297904501152,0.0679914901909147,0,0,0,0,0,1.7663299476911,0.109265571963696,18.6246796486812,1.52983244612973,8.28373956323238,13.3247604325525,0,0.0757786982182394,0,0,0.20686599172379,1.0661699095049,0.476128862927481,0,0.0620747142958579,0,0,0.202117188958219,0.435433495793923,0,0.0673520530145875,0,2.32862249582209,0.0814032686109745,0,0,0,4.69281884806909,0,0,0,0.402547587182052,0 | |||
|short_description=p3@RBM20 | |||
}} |
Revision as of 04:58, 11 January 2014
Short description: | p3@RBM20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RBM20_5end |
Coexpression cluster: | C1104_heart_maxillary_teratocarcinoma_left_neuroblastoma_small_medulloblastoma |
Association with transcript: | -32bp_to_ENST00000369519, ENST00000539821, NM_001134363, uc001kzf.2_5end |
EntrezGene: | RBM20 |
HGNC: | 27424 |
UniProt: | Q5T481F5GXH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 3.67e-11 | 3 |
valve | 4.20e-11 | 3 |
cardiac mesenchyme | 4.20e-11 | 3 |
cardial valve | 4.20e-11 | 3 |
tunica intima | 4.20e-11 | 3 |
heart layer | 4.20e-11 | 3 |
endocardium | 4.20e-11 | 3 |
endocardial cushion | 4.20e-11 | 3 |
presumptive endocardium | 4.20e-11 | 3 |
primary circulatory organ | 5.98e-09 | 27 |
cardiac atrium | 5.18e-08 | 2 |
future cardiac atrium | 5.18e-08 | 2 |
atrioventricular valve | 7.77e-08 | 2 |
compound organ | 1.67e-07 | 68 |
pineal body | 2.46e-07 | 2 |
regional part of epithalamus | 2.46e-07 | 2 |
secretory circumventricular organ | 2.46e-07 | 2 |
circumventricular organ | 2.46e-07 | 2 |
epithalamus | 2.46e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.82e-11 | 22 |
germ cell cancer | 8.82e-11 | 22 |
heart disease | 3.20e-08 | 2 |
respiratory system cancer | 6.49e-07 | 16 |